Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 9:59679560-60369596

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63 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Tssr85466 9 59679829 to 59679845 16 + TSS region transcription start site region 85466
Cpgi21866 9 59679838 to 59680786 948 CpG island CpG island 21866
Gramd2 9 59680144 to 59718874 38730 + protein coding gene GRAM domain containing 2
Tssr85467 9 59680171 to 59680184 13 + TSS region transcription start site region 85467
Tssr85468 9 59680189 to 59680207 18 + TSS region transcription start site region 85468
Tssr89960 9 59680788 to 59680814 26 - TSS region transcription start site region 89960
Cpgi21867 9 59691697 to 59692053 356 CpG island CpG island 21867
Tssr2892 9 59707594 to 59707612 18 + TSS region transcription start site region 2892
Tssr85469 9 59709459 to 59709468 9 + TSS region transcription start site region 85469
Gm39347 9 59714280 to 59726769 12489 - lncRNA gene predicted gene, 39347
Senp8 9 59734259 to 59750649 16390 - protein coding gene SUMO/sentrin specific peptidase 8
Cpgi21868 9 59750405 to 59751859 1454 CpG island CpG island 21868
Tssr89961 9 59750616 to 59750644 28 - TSS region transcription start site region 89961
Tssr85470 9 59750851 to 59750857 6 + TSS region transcription start site region 85470
Tssr85471 9 59750876 to 59750918 42 + TSS region transcription start site region 85471
Myo9a 9 59750896 to 59928866 177970 + protein coding gene myosin IXa
Tssr85472 9 59750932 to 59750935 3 + TSS region transcription start site region 85472
Tssr85473 9 59750951 to 59750999 48 + TSS region transcription start site region 85473
Tssr85474 9 59751142 to 59751225 83 + TSS region transcription start site region 85474
Tssr85475 9 59751250 to 59751268 18 + TSS region transcription start site region 85475
Gm7613 9 59766717 to 59767203 486 - pseudogene predicted gene 7613
Gm20275 9 59827124 to 59941086 113962 - antisense lncRNA gene predicted gene, 20275
Gm2735 9 59844327 to 59844603 276 - pseudogene predicted gene 2735
Tssr85476 9 59870950 to 59870956 6 + TSS region transcription start site region 85476
Gm48805 9 59884984 to 59885397 413 - pseudogene predicted gene, 48805
Tssr89962 9 59941004 to 59941013 9 - TSS region transcription start site region 89962
Tssr89963 9 59941021 to 59941045 24 - TSS region transcription start site region 89963
Tssr89964 9 59941053 to 59941075 22 - TSS region transcription start site region 89964
Tssr85477 9 59942075 to 59942095 20 + TSS region transcription start site region 85477
Tssr85478 9 59942108 to 59942138 30 + TSS region transcription start site region 85478
Tssr85479 9 59942194 to 59942204 10 + TSS region transcription start site region 85479
Nr2e3 9 59942771 to 59960659 17888 - protein coding gene nuclear receptor subfamily 2, group E, member 3
Tssr89965 9 59948463 to 59948487 24 - TSS region transcription start site region 89965
Tssr89966 9 59948523 to 59948543 20 - TSS region transcription start site region 89966
Tssr89967 9 59948565 to 59948576 11 - TSS region transcription start site region 89967
Tssr89968 9 59949281 to 59949294 13 - TSS region transcription start site region 89968
Tssr89969 9 59949326 to 59949338 12 - TSS region transcription start site region 89969
Tssr89970 9 59949696 to 59949706 10 - TSS region transcription start site region 89970
Tssr89971 9 59949718 to 59949731 13 - TSS region transcription start site region 89971
Tssr89972 9 59950040 to 59950051 11 - TSS region transcription start site region 89972
Tssr89973 9 59950068 to 59950122 54 - TSS region transcription start site region 89973
Tssr85480 9 59951290 to 59951302 12 + TSS region transcription start site region 85480
Gm7616 9 59951294 to 59959044 7750 + antisense lncRNA gene predicted gene 7616
Gm15507 9 59957511 to 59961801 4290 - lincRNA gene predicted gene 15507
Thsd4 9 59966931 to 60522046 555115 - protein coding gene thrombospondin, type I, domain containing 4
Tssr89974 9 60024560 to 60024596 36 - TSS region transcription start site region 89974
Gm23668 9 60042069 to 60042179 110 - rRNA gene predicted gene, 23668
Tssr89975 9 60063029 to 60063031 2 - TSS region transcription start site region 89975
Tssr89976 9 60134711 to 60134728 17 - TSS region transcription start site region 89976
Tssr89977 9 60134817 to 60134833 16 - TSS region transcription start site region 89977
Tssr89978 9 60141118 to 60141140 22 - TSS region transcription start site region 89978
Tssr89979 9 60141208 to 60141217 9 - TSS region transcription start site region 89979
Tssr89980 9 60141224 to 60141246 22 - TSS region transcription start site region 89980
B930001P03Rik 9 60153315 to 60155244 1929 unclassified gene RIKEN cDNA B930001P03 gene
Tssr89981 9 60193690 to 60193702 12 - TSS region transcription start site region 89981
Tssr89982 9 60193703 to 60193718 15 - TSS region transcription start site region 89982
5930427L02Rik 9 60243076 to 60245272 2196 unclassified gene RIKEN cDNA 5930427L02 gene
Cpgi21869 9 60289108 to 60289305 197 CpG island CpG island 21869
D9Mit194 9 60306987 to 60307122 135 DNA segment DNA segment, Chr 9, Massachusetts Institute of Technology 194
Tssr85481 9 60334087 to 60334125 38 + TSS region transcription start site region 85481
2010001M07Rik 9 60334142 to 60334968 826 + antisense lncRNA gene RIKEN cDNA 2010001M07 gene
Tssr85482 9 60334186 to 60334195 9 + TSS region transcription start site region 85482
Tcq13 9 109260000 to 59990000 -49270000 QTL total cholesterol QTL 13