Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 9:59576142-59926225

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60 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Cpgi21862 9 59577719 to 59578880 1161 CpG island CpG island 21862
Celf6 9 59577917 to 59607292 29375 + protein coding gene CUGBP, Elav-like family member 6
Tssr85442 9 59578294 to 59578323 29 + TSS region transcription start site region 85442
Tssr85443 9 59585785 to 59585795 10 + TSS region transcription start site region 85443
Tssr85444 9 59589330 to 59589353 23 + TSS region transcription start site region 85444
Cpgi21863 9 59602849 to 59603663 814 CpG island CpG island 21863
Cpgi21864 9 59616957 to 59617977 1020 CpG island CpG island 21864
Tssr89958 9 59617088 to 59617136 48 - TSS region transcription start site region 89958
Tssr85445 9 59617238 to 59617282 44 + TSS region transcription start site region 85445
Tssr85446 9 59617284 to 59617301 17 + TSS region transcription start site region 85446
Parp6 9 59617284 to 59650285 33001 + protein coding gene poly (ADP-ribose) polymerase family, member 6
Tssr85447 9 59617302 to 59617378 76 + TSS region transcription start site region 85447
Tssr85448 9 59618268 to 59618272 4 + TSS region transcription start site region 85448
Tssr85449 9 59653601 to 59653624 23 + TSS region transcription start site region 85449
Cpgi21865 9 59655854 to 59657657 1803 CpG island CpG island 21865
Tssr85450 9 59656172 to 59656175 3 + TSS region transcription start site region 85450
Pkm 9 59656368 to 59679375 23007 + protein coding gene pyruvate kinase, muscle
Tssr85451 9 59656548 to 59656584 36 + TSS region transcription start site region 85451
Tssr85452 9 59656591 to 59656599 8 + TSS region transcription start site region 85452
Tssr85453 9 59656763 to 59656855 92 + TSS region transcription start site region 85453
Tssr85454 9 59657104 to 59657122 18 + TSS region transcription start site region 85454
Tssr85455 9 59657200 to 59657252 52 + TSS region transcription start site region 85455
Tssr85456 9 59657524 to 59657581 57 + TSS region transcription start site region 85456
Tssr85457 9 59657615 to 59657631 16 + TSS region transcription start site region 85457
Tssr85458 9 59658460 to 59658489 29 + TSS region transcription start site region 85458
Tssr85459 9 59659603 to 59659609 6 + TSS region transcription start site region 85459
1700043A12Rik 9 59660383 to 59661159 776 unclassified gene RIKEN cDNA 1700043A12 gene
Tssr85460 9 59661460 to 59661512 52 + TSS region transcription start site region 85460
Tssr89959 9 59664344 to 59664357 13 - TSS region transcription start site region 89959
Tssr85461 9 59665157 to 59665194 37 + TSS region transcription start site region 85461
Tssr85462 9 59665305 to 59665329 24 + TSS region transcription start site region 85462
Tssr85463 9 59668904 to 59668921 17 + TSS region transcription start site region 85463
Gm49759 9 59672814 to 59676700 3886 + unclassified gene predicted gene, 49759
Tssr85464 9 59676906 to 59676929 23 + TSS region transcription start site region 85464
Tssr85465 9 59677071 to 59677086 15 + TSS region transcription start site region 85465
Tssr85466 9 59679829 to 59679845 16 + TSS region transcription start site region 85466
Cpgi21866 9 59679838 to 59680786 948 CpG island CpG island 21866
Gramd2 9 59680144 to 59718874 38730 + protein coding gene GRAM domain containing 2
Tssr85467 9 59680171 to 59680184 13 + TSS region transcription start site region 85467
Tssr85468 9 59680189 to 59680207 18 + TSS region transcription start site region 85468
Tssr89960 9 59680788 to 59680814 26 - TSS region transcription start site region 89960
Cpgi21867 9 59691697 to 59692053 356 CpG island CpG island 21867
Tssr2892 9 59707594 to 59707612 18 + TSS region transcription start site region 2892
Tssr85469 9 59709459 to 59709468 9 + TSS region transcription start site region 85469
Gm39347 9 59714280 to 59726769 12489 - lncRNA gene predicted gene, 39347
Senp8 9 59734259 to 59750649 16390 - protein coding gene SUMO/sentrin specific peptidase 8
Cpgi21868 9 59750405 to 59751859 1454 CpG island CpG island 21868
Tssr89961 9 59750616 to 59750644 28 - TSS region transcription start site region 89961
Tssr85470 9 59750851 to 59750857 6 + TSS region transcription start site region 85470
Tssr85471 9 59750876 to 59750918 42 + TSS region transcription start site region 85471
Myo9a 9 59750896 to 59928866 177970 + protein coding gene myosin IXa
Tssr85472 9 59750932 to 59750935 3 + TSS region transcription start site region 85472
Tssr85473 9 59750951 to 59750999 48 + TSS region transcription start site region 85473
Tssr85474 9 59751142 to 59751225 83 + TSS region transcription start site region 85474
Tssr85475 9 59751250 to 59751268 18 + TSS region transcription start site region 85475
Gm7613 9 59766717 to 59767203 486 - pseudogene predicted gene 7613
Gm20275 9 59827124 to 59941086 113962 - antisense lncRNA gene predicted gene, 20275
Gm2735 9 59844327 to 59844603 276 - pseudogene predicted gene 2735
Tssr85476 9 59870950 to 59870956 6 + TSS region transcription start site region 85476
Gm48805 9 59884984 to 59885397 413 - pseudogene predicted gene, 48805