Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 9:58866460-60456512

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191 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Tssr89921 9 58869433 to 58869456 23 - TSS region transcription start site region 89921
Neo1 9 58874687 to 59036441 161754 - protein coding gene neogenin
Lfhrvq1 9 58877035 to 68648726 9771691 QTL low frequency time index heart rate varaiblity, QTL 1
Tssr89922 9 58979135 to 58979148 13 - TSS region transcription start site region 89922
Gm47271 9 58979251 to 59033856 54605 + antisense lncRNA gene predicted gene, 47271
Cpgi21856 9 59035415 to 59037364 1949 CpG island CpG island 21856
Tssr89923 9 59036202 to 59036221 19 - TSS region transcription start site region 89923
Tssr89924 9 59036235 to 59036244 9 - TSS region transcription start site region 89924
Tssr89925 9 59036280 to 59036293 13 - TSS region transcription start site region 89925
Tssr89926 9 59036323 to 59036344 21 - TSS region transcription start site region 89926
Tssr89927 9 59036366 to 59036383 17 - TSS region transcription start site region 89927
Tssr89928 9 59036387 to 59036460 73 - TSS region transcription start site region 89928
Tssr89929 9 59036872 to 59036885 13 - TSS region transcription start site region 89929
Tssr89930 9 59036941 to 59036955 14 - TSS region transcription start site region 89930
Gm38638 9 59040766 to 59041821 1055 - pseudogene predicted gene, 38638
Gm7589 9 59145677 to 59146210 533 - pseudogene predicted gene 7589
D9Mit335 9 59172505 to 59172629 124 DNA segment DNA Segment, Chr 9 Massachusetts Institute of Technology 335
Gm33053 9 59191410 to 59235071 43661 - lincRNA gene predicted gene, 33053
Gm39345 9 59257370 to 59259930 2560 - lncRNA gene predicted gene, 39345
Cpgi21857 9 59282505 to 59282690 185 CpG island CpG island 21857
Tssr89931 9 59284152 to 59284163 11 - TSS region transcription start site region 89931
Tssr89932 9 59284178 to 59284189 11 - TSS region transcription start site region 89932
Tssr89933 9 59284199 to 59284207 8 - TSS region transcription start site region 89933
Tssr85416 9 59288327 to 59288340 13 + TSS region transcription start site region 85416
Tssr85417 9 59288843 to 59288844 1 + TSS region transcription start site region 85417
Cpgi21858 9 59290989 to 59292241 1252 CpG island CpG island 21858
Tssr89934 9 59291370 to 59291384 14 - TSS region transcription start site region 89934
Tssr2890 9 59291397 to 59291412 15 - TSS region transcription start site region 2890
Adpgk 9 59291545 to 59316200 24655 + protein coding gene ADP-dependent glucokinase
Tssr85418 9 59291548 to 59291555 7 + TSS region transcription start site region 85418
Tssr85419 9 59291565 to 59291577 12 + TSS region transcription start site region 85419
Tssr85420 9 59291580 to 59291613 33 + TSS region transcription start site region 85420
Tssr85421 9 59291617 to 59291628 11 + TSS region transcription start site region 85421
Tssr85422 9 59292598 to 59292602 4 + TSS region transcription start site region 85422
Tssr85423 9 59311781 to 59311791 10 + TSS region transcription start site region 85423
Tssr85424 9 59315160 to 59315173 13 + TSS region transcription start site region 85424
Bbs4 9 59321990 to 59353508 31518 - protein coding gene Bardet-Biedl syndrome 4 (human)
Tssr89935 9 59330150 to 59330153 3 - TSS region transcription start site region 89935
Cpgi21859 9 59353176 to 59353693 517 CpG island CpG island 21859
Tssr89936 9 59353430 to 59353465 35 - TSS region transcription start site region 89936
Tssr2891 9 59355872 to 59355873 1 + TSS region transcription start site region 2891
Arih1 9 59388554 to 59486659 98105 - protein coding gene ariadne RBR E3 ubiquitin protein ligase 1
Tssr89937 9 59391544 to 59391561 17 - TSS region transcription start site region 89937
Tssr89938 9 59393195 to 59393218 23 - TSS region transcription start site region 89938
Tssr89939 9 59404476 to 59404482 6 - TSS region transcription start site region 89939
Tssr89940 9 59410627 to 59410632 5 - TSS region transcription start site region 89940
D9Mit102 9 59423325 to 59423466 141 DNA segment DNA segment, Chr 9, Massachusetts Institute of Technology 102
D9Ertd815e 9 59425689 to 59425927 238 DNA segment DNA segment, Chr 9, ERATO Doi 815, expressed
Tssr89941 9 59465090 to 59465106 16 - TSS region transcription start site region 89941
Tssr89942 9 59469114 to 59469118 4 - TSS region transcription start site region 89942
Rps11-ps1 9 59471759 to 59472233 474 - pseudogene ribosomal protein S11, pseudogene 1
Tssr89943 9 59472247 to 59472257 10 - TSS region transcription start site region 89943
Gm20199 9 59477745 to 59481741 3996 - lncRNA gene predicted gene, 20199
Cpgi21860 9 59485674 to 59487169 1495 CpG island CpG island 21860
Tssr89944 9 59486323 to 59486415 92 - TSS region transcription start site region 89944
Tssr89945 9 59486437 to 59486480 43 - TSS region transcription start site region 89945
Tssr89946 9 59486581 to 59486590 9 - TSS region transcription start site region 89946
Tssr89947 9 59486596 to 59486601 5 - TSS region transcription start site region 89947
Tssr89948 9 59486610 to 59486621 11 - TSS region transcription start site region 89948
Tssr89949 9 59486647 to 59486679 32 - TSS region transcription start site region 89949
Tssr85425 9 59486745 to 59486767 22 + TSS region transcription start site region 85425
Gm33180 9 59499361 to 59512865 13504 - lincRNA gene predicted gene, 33180
Tmem202 9 59518671 to 59539674 21003 - protein coding gene transmembrane protein 202
Tssr89950 9 59525446 to 59525476 30 - TSS region transcription start site region 89950
Tssr89951 9 59530236 to 59530240 4 - TSS region transcription start site region 89951
Cpgi21861 9 59539401 to 59540168 767 CpG island CpG island 21861
Hexa 9 59539545 to 59565109 25564 + protein coding gene hexosaminidase A
Tssr85426 9 59539643 to 59539717 74 + TSS region transcription start site region 85426
Tssr89952 9 59539919 to 59539988 69 - TSS region transcription start site region 89952
Tssr89953 9 59539989 to 59540005 16 - TSS region transcription start site region 89953
Tssr85427 9 59540925 to 59540955 30 + TSS region transcription start site region 85427
Tssr85428 9 59541834 to 59541860 26 + TSS region transcription start site region 85428
Tssr89954 9 59542607 to 59542627 20 - TSS region transcription start site region 89954
Tssr85429 9 59542772 to 59542804 32 + TSS region transcription start site region 85429
Tssr85430 9 59542821 to 59542832 11 + TSS region transcription start site region 85430
Tssr85431 9 59543002 to 59543014 12 + TSS region transcription start site region 85431
Tssr89955 9 59544593 to 59544607 14 - TSS region transcription start site region 89955
Tssr85432 9 59544828 to 59544835 7 + TSS region transcription start site region 85432
Tssr85433 9 59554160 to 59554190 30 + TSS region transcription start site region 85433
Tssr85434 9 59557335 to 59557367 32 + TSS region transcription start site region 85434
Tssr85435 9 59558068 to 59558097 29 + TSS region transcription start site region 85435
Tssr85436 9 59558102 to 59558112 10 + TSS region transcription start site region 85436
Tssr85437 9 59559369 to 59559383 14 + TSS region transcription start site region 85437
Tssr85438 9 59561021 to 59561035 14 + TSS region transcription start site region 85438
Tssr85439 9 59561978 to 59561995 17 + TSS region transcription start site region 85439
Tssr89956 9 59563917 to 59563957 40 - TSS region transcription start site region 89956
Tssr85440 9 59564859 to 59564879 20 + TSS region transcription start site region 85440
Tssr89957 9 59565096 to 59565108 12 - TSS region transcription start site region 89957
Tssr85441 9 59566506 to 59566508 2 + TSS region transcription start site region 85441
Cpgi21862 9 59577719 to 59578880 1161 CpG island CpG island 21862
Celf6 9 59577917 to 59607292 29375 + protein coding gene CUGBP, Elav-like family member 6
Tssr85442 9 59578294 to 59578323 29 + TSS region transcription start site region 85442
Tssr85443 9 59585785 to 59585795 10 + TSS region transcription start site region 85443
Tssr85444 9 59589330 to 59589353 23 + TSS region transcription start site region 85444
Cpgi21863 9 59602849 to 59603663 814 CpG island CpG island 21863
Cpgi21864 9 59616957 to 59617977 1020 CpG island CpG island 21864
Tssr89958 9 59617088 to 59617136 48 - TSS region transcription start site region 89958
Tssr85445 9 59617238 to 59617282 44 + TSS region transcription start site region 85445
Parp6 9 59617284 to 59650285 33001 + protein coding gene poly (ADP-ribose) polymerase family, member 6
Tssr85446 9 59617284 to 59617301 17 + TSS region transcription start site region 85446
Tssr85447 9 59617302 to 59617378 76 + TSS region transcription start site region 85447
Tssr85448 9 59618268 to 59618272 4 + TSS region transcription start site region 85448
Tssr85449 9 59653601 to 59653624 23 + TSS region transcription start site region 85449
Cpgi21865 9 59655854 to 59657657 1803 CpG island CpG island 21865
Tssr85450 9 59656172 to 59656175 3 + TSS region transcription start site region 85450
Pkm 9 59656368 to 59679375 23007 + protein coding gene pyruvate kinase, muscle
Tssr85451 9 59656548 to 59656584 36 + TSS region transcription start site region 85451
Tssr85452 9 59656591 to 59656599 8 + TSS region transcription start site region 85452
Tssr85453 9 59656763 to 59656855 92 + TSS region transcription start site region 85453
Tssr85454 9 59657104 to 59657122 18 + TSS region transcription start site region 85454
Tssr85455 9 59657200 to 59657252 52 + TSS region transcription start site region 85455
Tssr85456 9 59657524 to 59657581 57 + TSS region transcription start site region 85456
Tssr85457 9 59657615 to 59657631 16 + TSS region transcription start site region 85457
Tssr85458 9 59658460 to 59658489 29 + TSS region transcription start site region 85458
Tssr85459 9 59659603 to 59659609 6 + TSS region transcription start site region 85459
1700043A12Rik 9 59660383 to 59661159 776 unclassified gene RIKEN cDNA 1700043A12 gene
Tssr85460 9 59661460 to 59661512 52 + TSS region transcription start site region 85460
Tssr89959 9 59664344 to 59664357 13 - TSS region transcription start site region 89959
Tssr85461 9 59665157 to 59665194 37 + TSS region transcription start site region 85461
Tssr85462 9 59665305 to 59665329 24 + TSS region transcription start site region 85462
Tssr85463 9 59668904 to 59668921 17 + TSS region transcription start site region 85463
Gm49759 9 59672814 to 59676700 3886 + unclassified gene predicted gene, 49759
Tssr85464 9 59676906 to 59676929 23 + TSS region transcription start site region 85464
Tssr85465 9 59677071 to 59677086 15 + TSS region transcription start site region 85465
Tssr85466 9 59679829 to 59679845 16 + TSS region transcription start site region 85466
Cpgi21866 9 59679838 to 59680786 948 CpG island CpG island 21866
Gramd2 9 59680144 to 59718874 38730 + protein coding gene GRAM domain containing 2
Tssr85467 9 59680171 to 59680184 13 + TSS region transcription start site region 85467
Tssr85468 9 59680189 to 59680207 18 + TSS region transcription start site region 85468
Tssr89960 9 59680788 to 59680814 26 - TSS region transcription start site region 89960
Cpgi21867 9 59691697 to 59692053 356 CpG island CpG island 21867
Tssr2892 9 59707594 to 59707612 18 + TSS region transcription start site region 2892
Tssr85469 9 59709459 to 59709468 9 + TSS region transcription start site region 85469
Gm39347 9 59714280 to 59726769 12489 - lncRNA gene predicted gene, 39347
Senp8 9 59734259 to 59750649 16390 - protein coding gene SUMO/sentrin specific peptidase 8
Cpgi21868 9 59750405 to 59751859 1454 CpG island CpG island 21868
Tssr89961 9 59750616 to 59750644 28 - TSS region transcription start site region 89961
Tssr85470 9 59750851 to 59750857 6 + TSS region transcription start site region 85470
Tssr85471 9 59750876 to 59750918 42 + TSS region transcription start site region 85471
Myo9a 9 59750896 to 59928866 177970 + protein coding gene myosin IXa
Tssr85472 9 59750932 to 59750935 3 + TSS region transcription start site region 85472
Tssr85473 9 59750951 to 59750999 48 + TSS region transcription start site region 85473
Tssr85474 9 59751142 to 59751225 83 + TSS region transcription start site region 85474
Tssr85475 9 59751250 to 59751268 18 + TSS region transcription start site region 85475
Gm7613 9 59766717 to 59767203 486 - pseudogene predicted gene 7613
Gm20275 9 59827124 to 59941086 113962 - antisense lncRNA gene predicted gene, 20275
Gm2735 9 59844327 to 59844603 276 - pseudogene predicted gene 2735
Tssr85476 9 59870950 to 59870956 6 + TSS region transcription start site region 85476
Gm48805 9 59884984 to 59885397 413 - pseudogene predicted gene, 48805
Tssr89962 9 59941004 to 59941013 9 - TSS region transcription start site region 89962
Tssr89963 9 59941021 to 59941045 24 - TSS region transcription start site region 89963
Tssr89964 9 59941053 to 59941075 22 - TSS region transcription start site region 89964
Tssr85477 9 59942075 to 59942095 20 + TSS region transcription start site region 85477
Tssr85478 9 59942108 to 59942138 30 + TSS region transcription start site region 85478
Tssr85479 9 59942194 to 59942204 10 + TSS region transcription start site region 85479
Nr2e3 9 59942771 to 59960659 17888 - protein coding gene nuclear receptor subfamily 2, group E, member 3
Tssr89965 9 59948463 to 59948487 24 - TSS region transcription start site region 89965
Tssr89966 9 59948523 to 59948543 20 - TSS region transcription start site region 89966
Tssr89967 9 59948565 to 59948576 11 - TSS region transcription start site region 89967
Tssr89968 9 59949281 to 59949294 13 - TSS region transcription start site region 89968
Tssr89969 9 59949326 to 59949338 12 - TSS region transcription start site region 89969
Tssr89970 9 59949696 to 59949706 10 - TSS region transcription start site region 89970
Tssr89971 9 59949718 to 59949731 13 - TSS region transcription start site region 89971
Tssr89972 9 59950040 to 59950051 11 - TSS region transcription start site region 89972
Tssr89973 9 59950068 to 59950122 54 - TSS region transcription start site region 89973
Tssr85480 9 59951290 to 59951302 12 + TSS region transcription start site region 85480
Gm7616 9 59951294 to 59959044 7750 + antisense lncRNA gene predicted gene 7616
Gm15507 9 59957511 to 59961801 4290 - lincRNA gene predicted gene 15507
Thsd4 9 59966931 to 60522046 555115 - protein coding gene thrombospondin, type I, domain containing 4
Tssr89974 9 60024560 to 60024596 36 - TSS region transcription start site region 89974
Gm23668 9 60042069 to 60042179 110 - rRNA gene predicted gene, 23668
Tssr89975 9 60063029 to 60063031 2 - TSS region transcription start site region 89975
Tssr89976 9 60134711 to 60134728 17 - TSS region transcription start site region 89976
Tssr89977 9 60134817 to 60134833 16 - TSS region transcription start site region 89977
Tssr89978 9 60141118 to 60141140 22 - TSS region transcription start site region 89978
Tssr89979 9 60141208 to 60141217 9 - TSS region transcription start site region 89979
Tssr89980 9 60141224 to 60141246 22 - TSS region transcription start site region 89980
B930001P03Rik 9 60153315 to 60155244 1929 unclassified gene RIKEN cDNA B930001P03 gene
Tssr89981 9 60193690 to 60193702 12 - TSS region transcription start site region 89981
Tssr89982 9 60193703 to 60193718 15 - TSS region transcription start site region 89982
5930427L02Rik 9 60243076 to 60245272 2196 unclassified gene RIKEN cDNA 5930427L02 gene
Cpgi21869 9 60289108 to 60289305 197 CpG island CpG island 21869
D9Mit194 9 60306987 to 60307122 135 DNA segment DNA segment, Chr 9, Massachusetts Institute of Technology 194
Tssr85481 9 60334087 to 60334125 38 + TSS region transcription start site region 85481
2010001M07Rik 9 60334142 to 60334968 826 + antisense lncRNA gene RIKEN cDNA 2010001M07 gene
Tssr85482 9 60334186 to 60334195 9 + TSS region transcription start site region 85482
Gm47676 9 60391793 to 60393757 1964 - unclassified gene predicted gene, 47676
Gm22099 9 60419863 to 60419985 122 + snoRNA gene predicted gene, 22099
Tssr89983 9 60449670 to 60449689 19 - TSS region transcription start site region 89983
Tssr89984 9 60449696 to 60449705 9 - TSS region transcription start site region 89984
Tcq13 9 109260000 to 59990000 -49270000 QTL total cholesterol QTL 13