Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 9:58700677-59591210

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105 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Rec114 9 58652856 to 58741563 88707 - protein coding gene REC114 meiotic recombination protein
Cpgi21852 9 58741396 to 58741680 284 CpG island CpG island 21852
Tssr89920 9 58741543 to 58741580 37 - TSS region transcription start site region 89920
Gm21183 9 58750745 to 58751269 524 - pseudogene predicted gene, 21183
Tssr85413 9 58803525 to 58803537 12 + TSS region transcription start site region 85413
Cpgi21853 9 58805996 to 58806248 252 CpG island CpG island 21853
Cpgi21854 9 58822051 to 58824609 2558 CpG island CpG island 21854
Tssr85414 9 58822848 to 58822862 14 + TSS region transcription start site region 85414
Tssr85415 9 58822939 to 58822966 27 + TSS region transcription start site region 85415
Hcn4 9 58823512 to 58860955 37443 + protein coding gene hyperpolarization-activated, cyclic nucleotide-gated K+ 4
Cpgi21855 9 58859006 to 58859559 553 CpG island CpG island 21855
Tssr89921 9 58869433 to 58869456 23 - TSS region transcription start site region 89921
Neo1 9 58874687 to 59036441 161754 - protein coding gene neogenin
Lfhrvq1 9 58877035 to 68648726 9771691 QTL low frequency time index heart rate varaiblity, QTL 1
Tssr89922 9 58979135 to 58979148 13 - TSS region transcription start site region 89922
Gm47271 9 58979251 to 59033856 54605 + antisense lncRNA gene predicted gene, 47271
Cpgi21856 9 59035415 to 59037364 1949 CpG island CpG island 21856
Tssr89923 9 59036202 to 59036221 19 - TSS region transcription start site region 89923
Tssr89924 9 59036235 to 59036244 9 - TSS region transcription start site region 89924
Tssr89925 9 59036280 to 59036293 13 - TSS region transcription start site region 89925
Tssr89926 9 59036323 to 59036344 21 - TSS region transcription start site region 89926
Tssr89927 9 59036366 to 59036383 17 - TSS region transcription start site region 89927
Tssr89928 9 59036387 to 59036460 73 - TSS region transcription start site region 89928
Tssr89929 9 59036872 to 59036885 13 - TSS region transcription start site region 89929
Tssr89930 9 59036941 to 59036955 14 - TSS region transcription start site region 89930
Gm38638 9 59040766 to 59041821 1055 - pseudogene predicted gene, 38638
Gm7589 9 59145677 to 59146210 533 - pseudogene predicted gene 7589
D9Mit335 9 59172505 to 59172629 124 DNA segment DNA Segment, Chr 9 Massachusetts Institute of Technology 335
Gm33053 9 59191410 to 59235071 43661 - lincRNA gene predicted gene, 33053
Gm39345 9 59257370 to 59259930 2560 - lncRNA gene predicted gene, 39345
Cpgi21857 9 59282505 to 59282690 185 CpG island CpG island 21857
Tssr89931 9 59284152 to 59284163 11 - TSS region transcription start site region 89931
Tssr89932 9 59284178 to 59284189 11 - TSS region transcription start site region 89932
Tssr89933 9 59284199 to 59284207 8 - TSS region transcription start site region 89933
Tssr85416 9 59288327 to 59288340 13 + TSS region transcription start site region 85416
Tssr85417 9 59288843 to 59288844 1 + TSS region transcription start site region 85417
Cpgi21858 9 59290989 to 59292241 1252 CpG island CpG island 21858
Tssr89934 9 59291370 to 59291384 14 - TSS region transcription start site region 89934
Tssr2890 9 59291397 to 59291412 15 - TSS region transcription start site region 2890
Adpgk 9 59291545 to 59316200 24655 + protein coding gene ADP-dependent glucokinase
Tssr85418 9 59291548 to 59291555 7 + TSS region transcription start site region 85418
Tssr85419 9 59291565 to 59291577 12 + TSS region transcription start site region 85419
Tssr85420 9 59291580 to 59291613 33 + TSS region transcription start site region 85420
Tssr85421 9 59291617 to 59291628 11 + TSS region transcription start site region 85421
Tssr85422 9 59292598 to 59292602 4 + TSS region transcription start site region 85422
Tssr85423 9 59311781 to 59311791 10 + TSS region transcription start site region 85423
Tssr85424 9 59315160 to 59315173 13 + TSS region transcription start site region 85424
Bbs4 9 59321990 to 59353508 31518 - protein coding gene Bardet-Biedl syndrome 4 (human)
Tssr89935 9 59330150 to 59330153 3 - TSS region transcription start site region 89935
Cpgi21859 9 59353176 to 59353693 517 CpG island CpG island 21859
Tssr89936 9 59353430 to 59353465 35 - TSS region transcription start site region 89936
Tssr2891 9 59355872 to 59355873 1 + TSS region transcription start site region 2891
Arih1 9 59388554 to 59486659 98105 - protein coding gene ariadne RBR E3 ubiquitin protein ligase 1
Tssr89937 9 59391544 to 59391561 17 - TSS region transcription start site region 89937
Tssr89938 9 59393195 to 59393218 23 - TSS region transcription start site region 89938
Tssr89939 9 59404476 to 59404482 6 - TSS region transcription start site region 89939
Tssr89940 9 59410627 to 59410632 5 - TSS region transcription start site region 89940
D9Mit102 9 59423325 to 59423466 141 DNA segment DNA segment, Chr 9, Massachusetts Institute of Technology 102
D9Ertd815e 9 59425689 to 59425927 238 DNA segment DNA segment, Chr 9, ERATO Doi 815, expressed
Tssr89941 9 59465090 to 59465106 16 - TSS region transcription start site region 89941
Tssr89942 9 59469114 to 59469118 4 - TSS region transcription start site region 89942
Rps11-ps1 9 59471759 to 59472233 474 - pseudogene ribosomal protein S11, pseudogene 1
Tssr89943 9 59472247 to 59472257 10 - TSS region transcription start site region 89943
Gm20199 9 59477745 to 59481741 3996 - lncRNA gene predicted gene, 20199
Cpgi21860 9 59485674 to 59487169 1495 CpG island CpG island 21860
Tssr89944 9 59486323 to 59486415 92 - TSS region transcription start site region 89944
Tssr89945 9 59486437 to 59486480 43 - TSS region transcription start site region 89945
Tssr89946 9 59486581 to 59486590 9 - TSS region transcription start site region 89946
Tssr89947 9 59486596 to 59486601 5 - TSS region transcription start site region 89947
Tssr89948 9 59486610 to 59486621 11 - TSS region transcription start site region 89948
Tssr89949 9 59486647 to 59486679 32 - TSS region transcription start site region 89949
Tssr85425 9 59486745 to 59486767 22 + TSS region transcription start site region 85425
Gm33180 9 59499361 to 59512865 13504 - lincRNA gene predicted gene, 33180
Tmem202 9 59518671 to 59539674 21003 - protein coding gene transmembrane protein 202
Tssr89950 9 59525446 to 59525476 30 - TSS region transcription start site region 89950
Tssr89951 9 59530236 to 59530240 4 - TSS region transcription start site region 89951
Cpgi21861 9 59539401 to 59540168 767 CpG island CpG island 21861
Hexa 9 59539545 to 59565109 25564 + protein coding gene hexosaminidase A
Tssr85426 9 59539643 to 59539717 74 + TSS region transcription start site region 85426
Tssr89952 9 59539919 to 59539988 69 - TSS region transcription start site region 89952
Tssr89953 9 59539989 to 59540005 16 - TSS region transcription start site region 89953
Tssr85427 9 59540925 to 59540955 30 + TSS region transcription start site region 85427
Tssr85428 9 59541834 to 59541860 26 + TSS region transcription start site region 85428
Tssr89954 9 59542607 to 59542627 20 - TSS region transcription start site region 89954
Tssr85429 9 59542772 to 59542804 32 + TSS region transcription start site region 85429
Tssr85430 9 59542821 to 59542832 11 + TSS region transcription start site region 85430
Tssr85431 9 59543002 to 59543014 12 + TSS region transcription start site region 85431
Tssr89955 9 59544593 to 59544607 14 - TSS region transcription start site region 89955
Tssr85432 9 59544828 to 59544835 7 + TSS region transcription start site region 85432
Tssr85433 9 59554160 to 59554190 30 + TSS region transcription start site region 85433
Tssr85434 9 59557335 to 59557367 32 + TSS region transcription start site region 85434
Tssr85435 9 59558068 to 59558097 29 + TSS region transcription start site region 85435
Tssr85436 9 59558102 to 59558112 10 + TSS region transcription start site region 85436
Tssr85437 9 59559369 to 59559383 14 + TSS region transcription start site region 85437
Tssr85438 9 59561021 to 59561035 14 + TSS region transcription start site region 85438
Tssr85439 9 59561978 to 59561995 17 + TSS region transcription start site region 85439
Tssr89956 9 59563917 to 59563957 40 - TSS region transcription start site region 89956
Tssr85440 9 59564859 to 59564879 20 + TSS region transcription start site region 85440
Tssr89957 9 59565096 to 59565108 12 - TSS region transcription start site region 89957
Tssr85441 9 59566506 to 59566508 2 + TSS region transcription start site region 85441
Cpgi21862 9 59577719 to 59578880 1161 CpG island CpG island 21862
Celf6 9 59577917 to 59607292 29375 + protein coding gene CUGBP, Elav-like family member 6
Tssr85442 9 59578294 to 59578323 29 + TSS region transcription start site region 85442
Tssr85443 9 59585785 to 59585795 10 + TSS region transcription start site region 85443
Tssr85444 9 59589330 to 59589353 23 + TSS region transcription start site region 85444