Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 9:58571366-59501383

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96 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Cpgi21851 9 58581753 to 58583150 1397 CpG island CpG island 21851
Tssr89917 9 58582073 to 58582090 17 - TSS region transcription start site region 89917
Nptn 9 58582240 to 58652879 70639 + protein coding gene neuroplastin
Tssr85398 9 58582258 to 58582269 11 + TSS region transcription start site region 85398
Tssr85399 9 58582397 to 58582416 19 + TSS region transcription start site region 85399
Tssr85400 9 58599385 to 58599389 4 + TSS region transcription start site region 85400
Tssr85401 9 58603729 to 58603752 23 + TSS region transcription start site region 85401
Tssr85402 9 58607482 to 58607484 2 + TSS region transcription start site region 85402
Tssr85403 9 58611518 to 58611525 7 + TSS region transcription start site region 85403
Tssr85404 9 58614368 to 58614372 4 + TSS region transcription start site region 85404
Tssr85405 9 58618763 to 58618777 14 + TSS region transcription start site region 85405
Tssr85406 9 58629102 to 58629110 8 + TSS region transcription start site region 85406
Tssr85407 9 58629112 to 58629123 11 + TSS region transcription start site region 85407
Tssr85408 9 58629124 to 58629134 10 + TSS region transcription start site region 85408
Tssr85409 9 58640737 to 58640759 22 + TSS region transcription start site region 85409
D9Ertd167e 9 58646496 to 58646703 207 DNA segment DNA segment, Chr 9, ERATO Doi 167, expressed
Tssr85410 9 58652034 to 58652088 54 + TSS region transcription start site region 85410
Tssr85411 9 58652418 to 58652448 30 + TSS region transcription start site region 85411
Rec114 9 58652856 to 58741563 88707 - protein coding gene REC114 meiotic recombination protein
Tssr85412 9 58653117 to 58653153 36 + TSS region transcription start site region 85412
Tssr89918 9 58657823 to 58657878 55 - TSS region transcription start site region 89918
Tssr89919 9 58657887 to 58657898 11 - TSS region transcription start site region 89919
A130026P03Rik 9 58666664 to 58668843 2179 unclassified gene RIKEN cDNA A130026P03 gene
Gm20620 9 58695844 to 58696011 167 - pseudogene predicted gene 20620
Cpgi21852 9 58741396 to 58741680 284 CpG island CpG island 21852
Tssr89920 9 58741543 to 58741580 37 - TSS region transcription start site region 89920
Gm21183 9 58750745 to 58751269 524 - pseudogene predicted gene, 21183
Tssr85413 9 58803525 to 58803537 12 + TSS region transcription start site region 85413
Cpgi21853 9 58805996 to 58806248 252 CpG island CpG island 21853
Cpgi21854 9 58822051 to 58824609 2558 CpG island CpG island 21854
Tssr85414 9 58822848 to 58822862 14 + TSS region transcription start site region 85414
Tssr85415 9 58822939 to 58822966 27 + TSS region transcription start site region 85415
Hcn4 9 58823512 to 58860955 37443 + protein coding gene hyperpolarization-activated, cyclic nucleotide-gated K+ 4
Cpgi21855 9 58859006 to 58859559 553 CpG island CpG island 21855
Tssr89921 9 58869433 to 58869456 23 - TSS region transcription start site region 89921
Neo1 9 58874687 to 59036441 161754 - protein coding gene neogenin
Lfhrvq1 9 58877035 to 68648726 9771691 QTL low frequency time index heart rate varaiblity, QTL 1
Tssr89922 9 58979135 to 58979148 13 - TSS region transcription start site region 89922
Gm47271 9 58979251 to 59033856 54605 + antisense lncRNA gene predicted gene, 47271
Cpgi21856 9 59035415 to 59037364 1949 CpG island CpG island 21856
Tssr89923 9 59036202 to 59036221 19 - TSS region transcription start site region 89923
Tssr89924 9 59036235 to 59036244 9 - TSS region transcription start site region 89924
Tssr89925 9 59036280 to 59036293 13 - TSS region transcription start site region 89925
Tssr89926 9 59036323 to 59036344 21 - TSS region transcription start site region 89926
Tssr89927 9 59036366 to 59036383 17 - TSS region transcription start site region 89927
Tssr89928 9 59036387 to 59036460 73 - TSS region transcription start site region 89928
Tssr89929 9 59036872 to 59036885 13 - TSS region transcription start site region 89929
Tssr89930 9 59036941 to 59036955 14 - TSS region transcription start site region 89930
Gm38638 9 59040766 to 59041821 1055 - pseudogene predicted gene, 38638
Gm7589 9 59145677 to 59146210 533 - pseudogene predicted gene 7589
D9Mit335 9 59172505 to 59172629 124 DNA segment DNA Segment, Chr 9 Massachusetts Institute of Technology 335
Gm33053 9 59191410 to 59235071 43661 - lincRNA gene predicted gene, 33053
Gm39345 9 59257370 to 59259930 2560 - lncRNA gene predicted gene, 39345
Cpgi21857 9 59282505 to 59282690 185 CpG island CpG island 21857
Tssr89931 9 59284152 to 59284163 11 - TSS region transcription start site region 89931
Tssr89932 9 59284178 to 59284189 11 - TSS region transcription start site region 89932
Tssr89933 9 59284199 to 59284207 8 - TSS region transcription start site region 89933
Tssr85416 9 59288327 to 59288340 13 + TSS region transcription start site region 85416
Tssr85417 9 59288843 to 59288844 1 + TSS region transcription start site region 85417
Cpgi21858 9 59290989 to 59292241 1252 CpG island CpG island 21858
Tssr89934 9 59291370 to 59291384 14 - TSS region transcription start site region 89934
Tssr2890 9 59291397 to 59291412 15 - TSS region transcription start site region 2890
Adpgk 9 59291545 to 59316200 24655 + protein coding gene ADP-dependent glucokinase
Tssr85418 9 59291548 to 59291555 7 + TSS region transcription start site region 85418
Tssr85419 9 59291565 to 59291577 12 + TSS region transcription start site region 85419
Tssr85420 9 59291580 to 59291613 33 + TSS region transcription start site region 85420
Tssr85421 9 59291617 to 59291628 11 + TSS region transcription start site region 85421
Tssr85422 9 59292598 to 59292602 4 + TSS region transcription start site region 85422
Tssr85423 9 59311781 to 59311791 10 + TSS region transcription start site region 85423
Tssr85424 9 59315160 to 59315173 13 + TSS region transcription start site region 85424
Bbs4 9 59321990 to 59353508 31518 - protein coding gene Bardet-Biedl syndrome 4 (human)
Tssr89935 9 59330150 to 59330153 3 - TSS region transcription start site region 89935
Cpgi21859 9 59353176 to 59353693 517 CpG island CpG island 21859
Tssr89936 9 59353430 to 59353465 35 - TSS region transcription start site region 89936
Tssr2891 9 59355872 to 59355873 1 + TSS region transcription start site region 2891
Arih1 9 59388554 to 59486659 98105 - protein coding gene ariadne RBR E3 ubiquitin protein ligase 1
Tssr89937 9 59391544 to 59391561 17 - TSS region transcription start site region 89937
Tssr89938 9 59393195 to 59393218 23 - TSS region transcription start site region 89938
Tssr89939 9 59404476 to 59404482 6 - TSS region transcription start site region 89939
Tssr89940 9 59410627 to 59410632 5 - TSS region transcription start site region 89940
D9Mit102 9 59423325 to 59423466 141 DNA segment DNA segment, Chr 9, Massachusetts Institute of Technology 102
D9Ertd815e 9 59425689 to 59425927 238 DNA segment DNA segment, Chr 9, ERATO Doi 815, expressed
Tssr89941 9 59465090 to 59465106 16 - TSS region transcription start site region 89941
Tssr89942 9 59469114 to 59469118 4 - TSS region transcription start site region 89942
Rps11-ps1 9 59471759 to 59472233 474 - pseudogene ribosomal protein S11, pseudogene 1
Tssr89943 9 59472247 to 59472257 10 - TSS region transcription start site region 89943
Gm20199 9 59477745 to 59481741 3996 - lncRNA gene predicted gene, 20199
Cpgi21860 9 59485674 to 59487169 1495 CpG island CpG island 21860
Tssr89944 9 59486323 to 59486415 92 - TSS region transcription start site region 89944
Tssr89945 9 59486437 to 59486480 43 - TSS region transcription start site region 89945
Tssr89946 9 59486581 to 59486590 9 - TSS region transcription start site region 89946
Tssr89947 9 59486596 to 59486601 5 - TSS region transcription start site region 89947
Tssr89948 9 59486610 to 59486621 11 - TSS region transcription start site region 89948
Tssr89949 9 59486647 to 59486679 32 - TSS region transcription start site region 89949
Tssr85425 9 59486745 to 59486767 22 + TSS region transcription start site region 85425
Gm33180 9 59499361 to 59512865 13504 - lincRNA gene predicted gene, 33180