Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 9:58272258-58892269

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96 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Tssr85381 9 58273106 to 58273123 17 + TSS region transcription start site region 85381
Tssr89893 9 58274043 to 58274060 17 - TSS region transcription start site region 89893
Tssr85382 9 58275438 to 58275448 10 + TSS region transcription start site region 85382
Tssr85383 9 58275540 to 58275556 16 + TSS region transcription start site region 85383
Tssr85384 9 58276495 to 58276505 10 + TSS region transcription start site region 85384
Tssr89894 9 58278988 to 58278993 5 - TSS region transcription start site region 89894
Tssr89895 9 58278996 to 58279018 22 - TSS region transcription start site region 89895
Tssr85385 9 58279650 to 58279678 28 + TSS region transcription start site region 85385
Tssr89896 9 58279919 to 58279927 8 - TSS region transcription start site region 89896
Tssr85386 9 58280070 to 58280087 17 + TSS region transcription start site region 85386
Loxl1 9 58287738 to 58313186 25448 - protein coding gene lysyl oxidase-like 1
Cpgi21846 9 58311619 to 58313242 1623 CpG island CpG island 21846
Tssr89897 9 58312316 to 58312330 14 - TSS region transcription start site region 89897
Tssr89898 9 58312350 to 58312439 89 - TSS region transcription start site region 89898
Tssr89899 9 58312961 to 58312973 12 - TSS region transcription start site region 89899
Tssr89900 9 58312990 to 58313004 14 - TSS region transcription start site region 89900
Tssr89901 9 58313155 to 58313166 11 - TSS region transcription start site region 89901
Tssr89902 9 58313175 to 58313186 11 - TSS region transcription start site region 89902
Tssr89903 9 58313189 to 58313212 23 - TSS region transcription start site region 89903
Tbc1d21 9 58359704 to 58370455 10751 - protein coding gene TBC1 domain family, member 21
D9Mit232 9 58362532 to 58362688 156 DNA segment DNA segment, Chr 9, Massachusetts Institute of Technology 232
D9Mit248 9 58362559 to 58362688 129 DNA segment DNA segment, Chr 9, Massachusetts Institute of Technology 248
D9Mit232.1 9 58362651 to 58362834 183 DNA segment DNA segment, Chr 9, Massachusetts Institute of Technology 232.1
Tssr89904 9 58370378 to 58370382 4 - TSS region transcription start site region 89904
Tssr89905 9 58370409 to 58370438 29 - TSS region transcription start site region 89905
Tssr89906 9 58370439 to 58370450 11 - TSS region transcription start site region 89906
Tssr89907 9 58370451 to 58370458 7 - TSS region transcription start site region 89907
Tssr89908 9 58370462 to 58370474 12 - TSS region transcription start site region 89908
1700072B07Rik 9 58370504 to 58374183 3679 + lincRNA gene RIKEN cDNA 1700072B07 gene
Tssr85387 9 58370549 to 58370565 16 + TSS region transcription start site region 85387
Tssr85388 9 58435835 to 58435838 3 + TSS region transcription start site region 85388
Tssr89909 9 58454816 to 58454846 30 - TSS region transcription start site region 89909
Tssr85389 9 58455096 to 58455113 17 + TSS region transcription start site region 85389
Tssr85390 9 58455156 to 58455185 29 + TSS region transcription start site region 85390
4930461G14Rik 9 58455173 to 58469623 14450 + lincRNA gene RIKEN cDNA 4930461G14 gene
Gm32820 9 58457223 to 58463835 6612 - lncRNA gene predicted gene, 32820
Tssr89910 9 58462819 to 58462826 7 - TSS region transcription start site region 89910
Gm32768 9 58464357 to 58473615 9258 - lncRNA gene predicted gene, 32768
Elads3 9 58470677 to 58470677 0 QTL ENU induced lung adenoma susceptibility 3
Cpgi21847 9 58487759 to 58489402 1643 CpG island CpG island 21847
Tssr85391 9 58488083 to 58488110 27 + TSS region transcription start site region 85391
Tssr85392 9 58488116 to 58488132 16 + TSS region transcription start site region 85392
Tssr85393 9 58488134 to 58488161 27 + TSS region transcription start site region 85393
Tssr85394 9 58488173 to 58488176 3 + TSS region transcription start site region 85394
Tssr85395 9 58488568 to 58488578 10 + TSS region transcription start site region 85395
Insyn1 9 58488603 to 58499742 11139 + protein coding gene inhibitory synaptic factor 1
Tssr85396 9 58489035 to 58489039 4 + TSS region transcription start site region 85396
Tssr85397 9 58489817 to 58489834 17 + TSS region transcription start site region 85397
Cpgi21848 9 58490113 to 58490318 205 CpG island CpG island 21848
Cd276 9 58524300 to 58555033 30733 - protein coding gene CD276 antigen
Tssr89911 9 58526171 to 58526185 14 - TSS region transcription start site region 89911
Cpgi21849 9 58537201 to 58537428 227 CpG island CpG island 21849
Cpgi21850 9 58554465 to 58555624 1159 CpG island CpG island 21850
Gm10657 9 58554799 to 58555829 1030 + protein coding gene predicted gene 10657
Tssr89912 9 58555081 to 58555127 46 - TSS region transcription start site region 89912
Tssr89913 9 58555129 to 58555143 14 - TSS region transcription start site region 89913
Tssr89914 9 58555187 to 58555217 30 - TSS region transcription start site region 89914
Tssr89915 9 58555219 to 58555246 27 - TSS region transcription start site region 89915
Tssr89916 9 58556139 to 58556155 16 - TSS region transcription start site region 89916
Cpgi21851 9 58581753 to 58583150 1397 CpG island CpG island 21851
Tssr89917 9 58582073 to 58582090 17 - TSS region transcription start site region 89917
Nptn 9 58582240 to 58652879 70639 + protein coding gene neuroplastin
Tssr85398 9 58582258 to 58582269 11 + TSS region transcription start site region 85398
Tssr85399 9 58582397 to 58582416 19 + TSS region transcription start site region 85399
Tssr85400 9 58599385 to 58599389 4 + TSS region transcription start site region 85400
Tssr85401 9 58603729 to 58603752 23 + TSS region transcription start site region 85401
Tssr85402 9 58607482 to 58607484 2 + TSS region transcription start site region 85402
Tssr85403 9 58611518 to 58611525 7 + TSS region transcription start site region 85403
Tssr85404 9 58614368 to 58614372 4 + TSS region transcription start site region 85404
Tssr85405 9 58618763 to 58618777 14 + TSS region transcription start site region 85405
Tssr85406 9 58629102 to 58629110 8 + TSS region transcription start site region 85406
Tssr85407 9 58629112 to 58629123 11 + TSS region transcription start site region 85407
Tssr85408 9 58629124 to 58629134 10 + TSS region transcription start site region 85408
Tssr85409 9 58640737 to 58640759 22 + TSS region transcription start site region 85409
D9Ertd167e 9 58646496 to 58646703 207 DNA segment DNA segment, Chr 9, ERATO Doi 167, expressed
Tssr85410 9 58652034 to 58652088 54 + TSS region transcription start site region 85410
Tssr85411 9 58652418 to 58652448 30 + TSS region transcription start site region 85411
Rec114 9 58652856 to 58741563 88707 - protein coding gene REC114 meiotic recombination protein
Tssr85412 9 58653117 to 58653153 36 + TSS region transcription start site region 85412
Tssr89918 9 58657823 to 58657878 55 - TSS region transcription start site region 89918
Tssr89919 9 58657887 to 58657898 11 - TSS region transcription start site region 89919
A130026P03Rik 9 58666664 to 58668843 2179 unclassified gene RIKEN cDNA A130026P03 gene
Gm20620 9 58695844 to 58696011 167 - pseudogene predicted gene 20620
Cpgi21852 9 58741396 to 58741680 284 CpG island CpG island 21852
Tssr89920 9 58741543 to 58741580 37 - TSS region transcription start site region 89920
Gm21183 9 58750745 to 58751269 524 - pseudogene predicted gene, 21183
Tssr85413 9 58803525 to 58803537 12 + TSS region transcription start site region 85413
Cpgi21853 9 58805996 to 58806248 252 CpG island CpG island 21853
Cpgi21854 9 58822051 to 58824609 2558 CpG island CpG island 21854
Tssr85414 9 58822848 to 58822862 14 + TSS region transcription start site region 85414
Tssr85415 9 58822939 to 58822966 27 + TSS region transcription start site region 85415
Hcn4 9 58823512 to 58860955 37443 + protein coding gene hyperpolarization-activated, cyclic nucleotide-gated K+ 4
Cpgi21855 9 58859006 to 58859559 553 CpG island CpG island 21855
Tssr89921 9 58869433 to 58869456 23 - TSS region transcription start site region 89921
Neo1 9 58874687 to 59036441 161754 - protein coding gene neogenin
Lfhrvq1 9 58877035 to 68648726 9771691 QTL low frequency time index heart rate varaiblity, QTL 1