Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 9:58207559-58517688

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71 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
1600029O15Rik 9 58202897 to 58208808 5911 + pseudogene RIKEN cDNA 1600029O15 gene
Pml 9 58218076 to 58249786 31710 - protein coding gene promyelocytic leukemia
Cpgi21842 9 58220293 to 58220527 234 CpG island CpG island 21842
Tssr89883 9 58221090 to 58221113 23 - TSS region transcription start site region 89883
Mir6385 9 58221150 to 58221254 104 + miRNA gene microRNA 6385
Tssr89884 9 58227034 to 58227049 15 - TSS region transcription start site region 89884
Tssr89885 9 58229824 to 58229828 4 - TSS region transcription start site region 89885
Cpgi21843 9 58234469 to 58234947 478 CpG island CpG island 21843
Tssr89886 9 58239597 to 58239601 4 - TSS region transcription start site region 89886
Tssr89887 9 58241052 to 58241068 16 - TSS region transcription start site region 89887
Cpgi21844 9 58246969 to 58247375 406 CpG island CpG island 21844
Tssr89888 9 58247124 to 58247141 17 - TSS region transcription start site region 89888
Tssr89889 9 58247450 to 58247465 15 - TSS region transcription start site region 89889
Tssr89890 9 58249629 to 58249640 11 - TSS region transcription start site region 89890
Tssr89891 9 58249661 to 58249672 11 - TSS region transcription start site region 89891
Tssr89892 9 58249702 to 58249791 89 - TSS region transcription start site region 89892
Cpgi21845 9 58253018 to 58253477 459 CpG island CpG island 21845
Stoml1 9 58253164 to 58262520 9356 + protein coding gene stomatin-like 1
Tssr85378 9 58253175 to 58253272 97 + TSS region transcription start site region 85378
Tssr85379 9 58253287 to 58253311 24 + TSS region transcription start site region 85379
Tssr85380 9 58253319 to 58253333 14 + TSS region transcription start site region 85380
D9Mit300 9 58266156 to 58266278 122 DNA segment DNA Segment, Chr 9, Massachusetts Institute of Technology 300
Tssr85381 9 58273106 to 58273123 17 + TSS region transcription start site region 85381
Tssr89893 9 58274043 to 58274060 17 - TSS region transcription start site region 89893
Tssr85382 9 58275438 to 58275448 10 + TSS region transcription start site region 85382
Tssr85383 9 58275540 to 58275556 16 + TSS region transcription start site region 85383
Tssr85384 9 58276495 to 58276505 10 + TSS region transcription start site region 85384
Tssr89894 9 58278988 to 58278993 5 - TSS region transcription start site region 89894
Tssr89895 9 58278996 to 58279018 22 - TSS region transcription start site region 89895
Tssr85385 9 58279650 to 58279678 28 + TSS region transcription start site region 85385
Tssr89896 9 58279919 to 58279927 8 - TSS region transcription start site region 89896
Tssr85386 9 58280070 to 58280087 17 + TSS region transcription start site region 85386
Loxl1 9 58287738 to 58313186 25448 - protein coding gene lysyl oxidase-like 1
Cpgi21846 9 58311619 to 58313242 1623 CpG island CpG island 21846
Tssr89897 9 58312316 to 58312330 14 - TSS region transcription start site region 89897
Tssr89898 9 58312350 to 58312439 89 - TSS region transcription start site region 89898
Tssr89899 9 58312961 to 58312973 12 - TSS region transcription start site region 89899
Tssr89900 9 58312990 to 58313004 14 - TSS region transcription start site region 89900
Tssr89901 9 58313155 to 58313166 11 - TSS region transcription start site region 89901
Tssr89902 9 58313175 to 58313186 11 - TSS region transcription start site region 89902
Tssr89903 9 58313189 to 58313212 23 - TSS region transcription start site region 89903
Tbc1d21 9 58359704 to 58370455 10751 - protein coding gene TBC1 domain family, member 21
D9Mit232 9 58362532 to 58362688 156 DNA segment DNA segment, Chr 9, Massachusetts Institute of Technology 232
D9Mit248 9 58362559 to 58362688 129 DNA segment DNA segment, Chr 9, Massachusetts Institute of Technology 248
D9Mit232.1 9 58362651 to 58362834 183 DNA segment DNA segment, Chr 9, Massachusetts Institute of Technology 232.1
Tssr89904 9 58370378 to 58370382 4 - TSS region transcription start site region 89904
Tssr89905 9 58370409 to 58370438 29 - TSS region transcription start site region 89905
Tssr89906 9 58370439 to 58370450 11 - TSS region transcription start site region 89906
Tssr89907 9 58370451 to 58370458 7 - TSS region transcription start site region 89907
Tssr89908 9 58370462 to 58370474 12 - TSS region transcription start site region 89908
1700072B07Rik 9 58370504 to 58374183 3679 + lincRNA gene RIKEN cDNA 1700072B07 gene
Tssr85387 9 58370549 to 58370565 16 + TSS region transcription start site region 85387
Tssr85388 9 58435835 to 58435838 3 + TSS region transcription start site region 85388
Tssr89909 9 58454816 to 58454846 30 - TSS region transcription start site region 89909
Tssr85389 9 58455096 to 58455113 17 + TSS region transcription start site region 85389
Tssr85390 9 58455156 to 58455185 29 + TSS region transcription start site region 85390
4930461G14Rik 9 58455173 to 58469623 14450 + lincRNA gene RIKEN cDNA 4930461G14 gene
Gm32820 9 58457223 to 58463835 6612 - lncRNA gene predicted gene, 32820
Tssr89910 9 58462819 to 58462826 7 - TSS region transcription start site region 89910
Gm32768 9 58464357 to 58473615 9258 - lncRNA gene predicted gene, 32768
Elads3 9 58470677 to 58470677 0 QTL ENU induced lung adenoma susceptibility 3
Cpgi21847 9 58487759 to 58489402 1643 CpG island CpG island 21847
Tssr85391 9 58488083 to 58488110 27 + TSS region transcription start site region 85391
Tssr85392 9 58488116 to 58488132 16 + TSS region transcription start site region 85392
Tssr85393 9 58488134 to 58488161 27 + TSS region transcription start site region 85393
Tssr85394 9 58488173 to 58488176 3 + TSS region transcription start site region 85394
Tssr85395 9 58488568 to 58488578 10 + TSS region transcription start site region 85395
Insyn1 9 58488603 to 58499742 11139 + protein coding gene inhibitory synaptic factor 1
Tssr85396 9 58489035 to 58489039 4 + TSS region transcription start site region 85396
Tssr85397 9 58489817 to 58489834 17 + TSS region transcription start site region 85397
Cpgi21848 9 58490113 to 58490318 205 CpG island CpG island 21848