Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 9:58138116-58838132

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162 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Stra6 9 58063788 to 58153996 90208 + protein coding gene stimulated by retinoic acid gene 6
Tssr85376 9 58139550 to 58139554 4 + TSS region transcription start site region 85376
Islr 9 58156246 to 58159236 2990 - protein coding gene immunoglobulin superfamily containing leucine-rich repeat
Tssr89845 9 58156332 to 58156363 31 - TSS region transcription start site region 89845
Tssr89846 9 58158465 to 58158478 13 - TSS region transcription start site region 89846
Tssr89847 9 58158498 to 58158551 53 - TSS region transcription start site region 89847
Tssr89848 9 58159012 to 58159032 20 - TSS region transcription start site region 89848
Tssr89849 9 58159048 to 58159078 30 - TSS region transcription start site region 89849
Tssr89850 9 58159153 to 58159179 26 - TSS region transcription start site region 89850
Tssr89851 9 58159201 to 58159239 38 - TSS region transcription start site region 89851
Gm39344 9 58174444 to 58188312 13868 + lncRNA gene predicted gene, 39344
Gm47174 9 58192045 to 58192192 147 - unclassified gene predicted gene, 47174
Islr2 9 58196297 to 58204319 8022 - protein coding gene immunoglobulin superfamily containing leucine-rich repeat 2
Cpgi21839 9 58196582 to 58200020 3438 CpG island CpG island 21839
Tssr89852 9 58198432 to 58198470 38 - TSS region transcription start site region 89852
Tssr89853 9 58199121 to 58199132 11 - TSS region transcription start site region 89853
Tssr89854 9 58199686 to 58199702 16 - TSS region transcription start site region 89854
Tssr89855 9 58199733 to 58199756 23 - TSS region transcription start site region 89855
Tssr89856 9 58199761 to 58199772 11 - TSS region transcription start site region 89856
Tssr89857 9 58200447 to 58200468 21 - TSS region transcription start site region 89857
Cpgi21840 9 58201193 to 58202509 1316 CpG island CpG island 21840
Tssr89858 9 58201301 to 58201316 15 - TSS region transcription start site region 89858
Tssr89859 9 58201325 to 58201352 27 - TSS region transcription start site region 89859
Tssr89860 9 58201356 to 58201383 27 - TSS region transcription start site region 89860
Tssr89861 9 58201395 to 58201406 11 - TSS region transcription start site region 89861
Tssr89862 9 58201474 to 58201519 45 - TSS region transcription start site region 89862
Tssr89863 9 58201525 to 58201544 19 - TSS region transcription start site region 89863
Tssr89864 9 58201551 to 58201618 67 - TSS region transcription start site region 89864
Tssr89865 9 58201627 to 58201638 11 - TSS region transcription start site region 89865
Tssr89866 9 58201685 to 58201697 12 - TSS region transcription start site region 89866
Tssr89867 9 58201705 to 58201725 20 - TSS region transcription start site region 89867
Tssr89868 9 58201902 to 58201913 11 - TSS region transcription start site region 89868
Tssr89869 9 58201935 to 58201942 7 - TSS region transcription start site region 89869
Tssr89870 9 58201961 to 58201974 13 - TSS region transcription start site region 89870
Tssr89871 9 58201982 to 58202023 41 - TSS region transcription start site region 89871
Tssr89872 9 58202026 to 58202051 25 - TSS region transcription start site region 89872
Tssr89873 9 58202066 to 58202075 9 - TSS region transcription start site region 89873
Tssr89874 9 58202161 to 58202190 29 - TSS region transcription start site region 89874
Tssr89875 9 58202256 to 58202271 15 - TSS region transcription start site region 89875
Tssr89876 9 58202281 to 58202295 14 - TSS region transcription start site region 89876
Tssr89877 9 58202301 to 58202322 21 - TSS region transcription start site region 89877
Tssr89878 9 58202350 to 58202363 13 - TSS region transcription start site region 89878
Tssr89879 9 58202747 to 58202772 25 - TSS region transcription start site region 89879
Tssr85377 9 58202855 to 58202866 11 + TSS region transcription start site region 85377
1600029O15Rik 9 58202897 to 58208808 5911 + pseudogene RIKEN cDNA 1600029O15 gene
Tssr89880 9 58202922 to 58202942 20 - TSS region transcription start site region 89880
Cpgi21841 9 58203801 to 58204426 625 CpG island CpG island 21841
Tssr89881 9 58204310 to 58204327 17 - TSS region transcription start site region 89881
Tssr89882 9 58204376 to 58204381 5 - TSS region transcription start site region 89882
Pml 9 58218076 to 58249786 31710 - protein coding gene promyelocytic leukemia
Cpgi21842 9 58220293 to 58220527 234 CpG island CpG island 21842
Tssr89883 9 58221090 to 58221113 23 - TSS region transcription start site region 89883
Mir6385 9 58221150 to 58221254 104 + miRNA gene microRNA 6385
Tssr89884 9 58227034 to 58227049 15 - TSS region transcription start site region 89884
Tssr89885 9 58229824 to 58229828 4 - TSS region transcription start site region 89885
Cpgi21843 9 58234469 to 58234947 478 CpG island CpG island 21843
Tssr89886 9 58239597 to 58239601 4 - TSS region transcription start site region 89886
Tssr89887 9 58241052 to 58241068 16 - TSS region transcription start site region 89887
Cpgi21844 9 58246969 to 58247375 406 CpG island CpG island 21844
Tssr89888 9 58247124 to 58247141 17 - TSS region transcription start site region 89888
Tssr89889 9 58247450 to 58247465 15 - TSS region transcription start site region 89889
Tssr89890 9 58249629 to 58249640 11 - TSS region transcription start site region 89890
Tssr89891 9 58249661 to 58249672 11 - TSS region transcription start site region 89891
Tssr89892 9 58249702 to 58249791 89 - TSS region transcription start site region 89892
Cpgi21845 9 58253018 to 58253477 459 CpG island CpG island 21845
Stoml1 9 58253164 to 58262520 9356 + protein coding gene stomatin-like 1
Tssr85378 9 58253175 to 58253272 97 + TSS region transcription start site region 85378
Tssr85379 9 58253287 to 58253311 24 + TSS region transcription start site region 85379
Tssr85380 9 58253319 to 58253333 14 + TSS region transcription start site region 85380
D9Mit300 9 58266156 to 58266278 122 DNA segment DNA Segment, Chr 9, Massachusetts Institute of Technology 300
Tssr85381 9 58273106 to 58273123 17 + TSS region transcription start site region 85381
Tssr89893 9 58274043 to 58274060 17 - TSS region transcription start site region 89893
Tssr85382 9 58275438 to 58275448 10 + TSS region transcription start site region 85382
Tssr85383 9 58275540 to 58275556 16 + TSS region transcription start site region 85383
Tssr85384 9 58276495 to 58276505 10 + TSS region transcription start site region 85384
Tssr89894 9 58278988 to 58278993 5 - TSS region transcription start site region 89894
Tssr89895 9 58278996 to 58279018 22 - TSS region transcription start site region 89895
Tssr85385 9 58279650 to 58279678 28 + TSS region transcription start site region 85385
Tssr89896 9 58279919 to 58279927 8 - TSS region transcription start site region 89896
Tssr85386 9 58280070 to 58280087 17 + TSS region transcription start site region 85386
Loxl1 9 58287738 to 58313186 25448 - protein coding gene lysyl oxidase-like 1
Cpgi21846 9 58311619 to 58313242 1623 CpG island CpG island 21846
Tssr89897 9 58312316 to 58312330 14 - TSS region transcription start site region 89897
Tssr89898 9 58312350 to 58312439 89 - TSS region transcription start site region 89898
Tssr89899 9 58312961 to 58312973 12 - TSS region transcription start site region 89899
Tssr89900 9 58312990 to 58313004 14 - TSS region transcription start site region 89900
Tssr89901 9 58313155 to 58313166 11 - TSS region transcription start site region 89901
Tssr89902 9 58313175 to 58313186 11 - TSS region transcription start site region 89902
Tssr89903 9 58313189 to 58313212 23 - TSS region transcription start site region 89903
Tbc1d21 9 58359704 to 58370455 10751 - protein coding gene TBC1 domain family, member 21
D9Mit232 9 58362532 to 58362688 156 DNA segment DNA segment, Chr 9, Massachusetts Institute of Technology 232
D9Mit248 9 58362559 to 58362688 129 DNA segment DNA segment, Chr 9, Massachusetts Institute of Technology 248
D9Mit232.1 9 58362651 to 58362834 183 DNA segment DNA segment, Chr 9, Massachusetts Institute of Technology 232.1
Tssr89904 9 58370378 to 58370382 4 - TSS region transcription start site region 89904
Tssr89905 9 58370409 to 58370438 29 - TSS region transcription start site region 89905
Tssr89906 9 58370439 to 58370450 11 - TSS region transcription start site region 89906
Tssr89907 9 58370451 to 58370458 7 - TSS region transcription start site region 89907
Tssr89908 9 58370462 to 58370474 12 - TSS region transcription start site region 89908
1700072B07Rik 9 58370504 to 58374183 3679 + lincRNA gene RIKEN cDNA 1700072B07 gene
Tssr85387 9 58370549 to 58370565 16 + TSS region transcription start site region 85387
Tssr85388 9 58435835 to 58435838 3 + TSS region transcription start site region 85388
Tssr89909 9 58454816 to 58454846 30 - TSS region transcription start site region 89909
Tssr85389 9 58455096 to 58455113 17 + TSS region transcription start site region 85389
Tssr85390 9 58455156 to 58455185 29 + TSS region transcription start site region 85390
4930461G14Rik 9 58455173 to 58469623 14450 + lincRNA gene RIKEN cDNA 4930461G14 gene
Gm32820 9 58457223 to 58463835 6612 - lncRNA gene predicted gene, 32820
Tssr89910 9 58462819 to 58462826 7 - TSS region transcription start site region 89910
Gm32768 9 58464357 to 58473615 9258 - lncRNA gene predicted gene, 32768
Elads3 9 58470677 to 58470677 0 QTL ENU induced lung adenoma susceptibility 3
Cpgi21847 9 58487759 to 58489402 1643 CpG island CpG island 21847
Tssr85391 9 58488083 to 58488110 27 + TSS region transcription start site region 85391
Tssr85392 9 58488116 to 58488132 16 + TSS region transcription start site region 85392
Tssr85393 9 58488134 to 58488161 27 + TSS region transcription start site region 85393
Tssr85394 9 58488173 to 58488176 3 + TSS region transcription start site region 85394
Tssr85395 9 58488568 to 58488578 10 + TSS region transcription start site region 85395
Insyn1 9 58488603 to 58499742 11139 + protein coding gene inhibitory synaptic factor 1
Tssr85396 9 58489035 to 58489039 4 + TSS region transcription start site region 85396
Tssr85397 9 58489817 to 58489834 17 + TSS region transcription start site region 85397
Cpgi21848 9 58490113 to 58490318 205 CpG island CpG island 21848
Cd276 9 58524300 to 58555033 30733 - protein coding gene CD276 antigen
Tssr89911 9 58526171 to 58526185 14 - TSS region transcription start site region 89911
Cpgi21849 9 58537201 to 58537428 227 CpG island CpG island 21849
Cpgi21850 9 58554465 to 58555624 1159 CpG island CpG island 21850
Gm10657 9 58554799 to 58555829 1030 + protein coding gene predicted gene 10657
Tssr89912 9 58555081 to 58555127 46 - TSS region transcription start site region 89912
Tssr89913 9 58555129 to 58555143 14 - TSS region transcription start site region 89913
Tssr89914 9 58555187 to 58555217 30 - TSS region transcription start site region 89914
Tssr89915 9 58555219 to 58555246 27 - TSS region transcription start site region 89915
Tssr89916 9 58556139 to 58556155 16 - TSS region transcription start site region 89916
Cpgi21851 9 58581753 to 58583150 1397 CpG island CpG island 21851
Tssr89917 9 58582073 to 58582090 17 - TSS region transcription start site region 89917
Nptn 9 58582240 to 58652879 70639 + protein coding gene neuroplastin
Tssr85398 9 58582258 to 58582269 11 + TSS region transcription start site region 85398
Tssr85399 9 58582397 to 58582416 19 + TSS region transcription start site region 85399
Tssr85400 9 58599385 to 58599389 4 + TSS region transcription start site region 85400
Tssr85401 9 58603729 to 58603752 23 + TSS region transcription start site region 85401
Tssr85402 9 58607482 to 58607484 2 + TSS region transcription start site region 85402
Tssr85403 9 58611518 to 58611525 7 + TSS region transcription start site region 85403
Tssr85404 9 58614368 to 58614372 4 + TSS region transcription start site region 85404
Tssr85405 9 58618763 to 58618777 14 + TSS region transcription start site region 85405
Tssr85406 9 58629102 to 58629110 8 + TSS region transcription start site region 85406
Tssr85407 9 58629112 to 58629123 11 + TSS region transcription start site region 85407
Tssr85408 9 58629124 to 58629134 10 + TSS region transcription start site region 85408
Tssr85409 9 58640737 to 58640759 22 + TSS region transcription start site region 85409
D9Ertd167e 9 58646496 to 58646703 207 DNA segment DNA segment, Chr 9, ERATO Doi 167, expressed
Tssr85410 9 58652034 to 58652088 54 + TSS region transcription start site region 85410
Tssr85411 9 58652418 to 58652448 30 + TSS region transcription start site region 85411
Rec114 9 58652856 to 58741563 88707 - protein coding gene REC114 meiotic recombination protein
Tssr85412 9 58653117 to 58653153 36 + TSS region transcription start site region 85412
Tssr89918 9 58657823 to 58657878 55 - TSS region transcription start site region 89918
Tssr89919 9 58657887 to 58657898 11 - TSS region transcription start site region 89919
A130026P03Rik 9 58666664 to 58668843 2179 unclassified gene RIKEN cDNA A130026P03 gene
Gm20620 9 58695844 to 58696011 167 - pseudogene predicted gene 20620
Cpgi21852 9 58741396 to 58741680 284 CpG island CpG island 21852
Tssr89920 9 58741543 to 58741580 37 - TSS region transcription start site region 89920
Gm21183 9 58750745 to 58751269 524 - pseudogene predicted gene, 21183
Tssr85413 9 58803525 to 58803537 12 + TSS region transcription start site region 85413
Cpgi21853 9 58805996 to 58806248 252 CpG island CpG island 21853
Cpgi21854 9 58822051 to 58824609 2558 CpG island CpG island 21854
Tssr85414 9 58822848 to 58822862 14 + TSS region transcription start site region 85414
Tssr85415 9 58822939 to 58822966 27 + TSS region transcription start site region 85415
Hcn4 9 58823512 to 58860955 37443 + protein coding gene hyperpolarization-activated, cyclic nucleotide-gated K+ 4