Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 9:58136627-58266638

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70 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Stra6 9 58063788 to 58153996 90208 + protein coding gene stimulated by retinoic acid gene 6
Tssr85376 9 58139550 to 58139554 4 + TSS region transcription start site region 85376
Islr 9 58156246 to 58159236 2990 - protein coding gene immunoglobulin superfamily containing leucine-rich repeat
Tssr89845 9 58156332 to 58156363 31 - TSS region transcription start site region 89845
Tssr89846 9 58158465 to 58158478 13 - TSS region transcription start site region 89846
Tssr89847 9 58158498 to 58158551 53 - TSS region transcription start site region 89847
Tssr89848 9 58159012 to 58159032 20 - TSS region transcription start site region 89848
Tssr89849 9 58159048 to 58159078 30 - TSS region transcription start site region 89849
Tssr89850 9 58159153 to 58159179 26 - TSS region transcription start site region 89850
Tssr89851 9 58159201 to 58159239 38 - TSS region transcription start site region 89851
Gm39344 9 58174444 to 58188312 13868 + lncRNA gene predicted gene, 39344
Gm47174 9 58192045 to 58192192 147 - unclassified gene predicted gene, 47174
Islr2 9 58196297 to 58204319 8022 - protein coding gene immunoglobulin superfamily containing leucine-rich repeat 2
Cpgi21839 9 58196582 to 58200020 3438 CpG island CpG island 21839
Tssr89852 9 58198432 to 58198470 38 - TSS region transcription start site region 89852
Tssr89853 9 58199121 to 58199132 11 - TSS region transcription start site region 89853
Tssr89854 9 58199686 to 58199702 16 - TSS region transcription start site region 89854
Tssr89855 9 58199733 to 58199756 23 - TSS region transcription start site region 89855
Tssr89856 9 58199761 to 58199772 11 - TSS region transcription start site region 89856
Tssr89857 9 58200447 to 58200468 21 - TSS region transcription start site region 89857
Cpgi21840 9 58201193 to 58202509 1316 CpG island CpG island 21840
Tssr89858 9 58201301 to 58201316 15 - TSS region transcription start site region 89858
Tssr89859 9 58201325 to 58201352 27 - TSS region transcription start site region 89859
Tssr89860 9 58201356 to 58201383 27 - TSS region transcription start site region 89860
Tssr89861 9 58201395 to 58201406 11 - TSS region transcription start site region 89861
Tssr89862 9 58201474 to 58201519 45 - TSS region transcription start site region 89862
Tssr89863 9 58201525 to 58201544 19 - TSS region transcription start site region 89863
Tssr89864 9 58201551 to 58201618 67 - TSS region transcription start site region 89864
Tssr89865 9 58201627 to 58201638 11 - TSS region transcription start site region 89865
Tssr89866 9 58201685 to 58201697 12 - TSS region transcription start site region 89866
Tssr89867 9 58201705 to 58201725 20 - TSS region transcription start site region 89867
Tssr89868 9 58201902 to 58201913 11 - TSS region transcription start site region 89868
Tssr89869 9 58201935 to 58201942 7 - TSS region transcription start site region 89869
Tssr89870 9 58201961 to 58201974 13 - TSS region transcription start site region 89870
Tssr89871 9 58201982 to 58202023 41 - TSS region transcription start site region 89871
Tssr89872 9 58202026 to 58202051 25 - TSS region transcription start site region 89872
Tssr89873 9 58202066 to 58202075 9 - TSS region transcription start site region 89873
Tssr89874 9 58202161 to 58202190 29 - TSS region transcription start site region 89874
Tssr89875 9 58202256 to 58202271 15 - TSS region transcription start site region 89875
Tssr89876 9 58202281 to 58202295 14 - TSS region transcription start site region 89876
Tssr89877 9 58202301 to 58202322 21 - TSS region transcription start site region 89877
Tssr89878 9 58202350 to 58202363 13 - TSS region transcription start site region 89878
Tssr89879 9 58202747 to 58202772 25 - TSS region transcription start site region 89879
Tssr85377 9 58202855 to 58202866 11 + TSS region transcription start site region 85377
1600029O15Rik 9 58202897 to 58208808 5911 + pseudogene RIKEN cDNA 1600029O15 gene
Tssr89880 9 58202922 to 58202942 20 - TSS region transcription start site region 89880
Cpgi21841 9 58203801 to 58204426 625 CpG island CpG island 21841
Tssr89881 9 58204310 to 58204327 17 - TSS region transcription start site region 89881
Tssr89882 9 58204376 to 58204381 5 - TSS region transcription start site region 89882
Pml 9 58218076 to 58249786 31710 - protein coding gene promyelocytic leukemia
Cpgi21842 9 58220293 to 58220527 234 CpG island CpG island 21842
Tssr89883 9 58221090 to 58221113 23 - TSS region transcription start site region 89883
Mir6385 9 58221150 to 58221254 104 + miRNA gene microRNA 6385
Tssr89884 9 58227034 to 58227049 15 - TSS region transcription start site region 89884
Tssr89885 9 58229824 to 58229828 4 - TSS region transcription start site region 89885
Cpgi21843 9 58234469 to 58234947 478 CpG island CpG island 21843
Tssr89886 9 58239597 to 58239601 4 - TSS region transcription start site region 89886
Tssr89887 9 58241052 to 58241068 16 - TSS region transcription start site region 89887
Cpgi21844 9 58246969 to 58247375 406 CpG island CpG island 21844
Tssr89888 9 58247124 to 58247141 17 - TSS region transcription start site region 89888
Tssr89889 9 58247450 to 58247465 15 - TSS region transcription start site region 89889
Tssr89890 9 58249629 to 58249640 11 - TSS region transcription start site region 89890
Tssr89891 9 58249661 to 58249672 11 - TSS region transcription start site region 89891
Tssr89892 9 58249702 to 58249791 89 - TSS region transcription start site region 89892
Cpgi21845 9 58253018 to 58253477 459 CpG island CpG island 21845
Stoml1 9 58253164 to 58262520 9356 + protein coding gene stomatin-like 1
Tssr85378 9 58253175 to 58253272 97 + TSS region transcription start site region 85378
Tssr85379 9 58253287 to 58253311 24 + TSS region transcription start site region 85379
Tssr85380 9 58253319 to 58253333 14 + TSS region transcription start site region 85380
D9Mit300 9 58266156 to 58266278 122 DNA segment DNA Segment, Chr 9, Massachusetts Institute of Technology 300