Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 9:57943677-58203823

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96 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Sema7a 9 57940135 to 57962865 22730 + protein coding gene sema domain, immunoglobulin domain (Ig), and GPI membrane anchor, (semaphorin) 7A
Tssr89838 9 57946576 to 57946587 11 - TSS region transcription start site region 89838
Tssr85345 9 57959995 to 57959998 3 + TSS region transcription start site region 85345
Tssr85346 9 57972512 to 57972526 14 + TSS region transcription start site region 85346
Tssr85347 9 57998036 to 57998058 22 + TSS region transcription start site region 85347
Tssr85348 9 57998068 to 57998093 25 + TSS region transcription start site region 85348
Gm17322 9 58005812 to 58006400 588 + lincRNA gene predicted gene, 17322
Cyp11a1 9 58006411 to 58027023 20612 + protein coding gene cytochrome P450, family 11, subfamily a, polypeptide 1
Tssr85349 9 58014472 to 58014507 35 + TSS region transcription start site region 85349
Tssr85350 9 58014990 to 58015005 15 + TSS region transcription start site region 85350
Tssr85351 9 58016357 to 58016371 14 + TSS region transcription start site region 85351
Tssr85352 9 58021949 to 58021964 15 + TSS region transcription start site region 85352
Tssr89839 9 58025121 to 58025154 33 - TSS region transcription start site region 89839
Tssr85353 9 58026951 to 58026962 11 + TSS region transcription start site region 85353
Tssr2889 9 58026994 to 58026999 5 + TSS region transcription start site region 2889
Ccdc33 9 58028677 to 58118823 90146 - protein coding gene coiled-coil domain containing 33
Gm16130 9 58032274 to 58048997 16723 + antisense lncRNA gene predicted gene 16130
D9Mit141.1 9 58062475 to 58062591 116 DNA segment DNA segment, Chr 9, Massachusetts Institute of Technology 141.1
D9Mit141 9 58062603 to 58062707 104 DNA segment DNA segment, Chr 9, Massachusetts Institute of Technology 141
Stra6 9 58063788 to 58153996 90208 + protein coding gene stimulated by retinoic acid gene 6
Tssr85354 9 58079337 to 58079356 19 + TSS region transcription start site region 85354
Tssr85355 9 58079358 to 58079382 24 + TSS region transcription start site region 85355
Tssr89840 9 58094326 to 58094328 2 - TSS region transcription start site region 89840
Tssr89841 9 58102258 to 58102269 11 - TSS region transcription start site region 89841
Tssr89842 9 58102272 to 58102305 33 - TSS region transcription start site region 89842
Tssr89843 9 58102313 to 58102316 3 - TSS region transcription start site region 89843
1700120E02Rik 9 58102344 to 58103055 711 unclassified gene RIKEN cDNA 1700120E02 gene
Cpgi21838 9 58113416 to 58113709 293 CpG island CpG island 21838
Gm16131 9 58117815 to 58118989 1174 + antisense lncRNA gene predicted gene 16131
Tssr89844 9 58118818 to 58118832 14 - TSS region transcription start site region 89844
Tssr85356 9 58129062 to 58129068 6 + TSS region transcription start site region 85356
Tssr85357 9 58129321 to 58129338 17 + TSS region transcription start site region 85357
Tssr85358 9 58129476 to 58129484 8 + TSS region transcription start site region 85358
Tssr85359 9 58131888 to 58131902 14 + TSS region transcription start site region 85359
Tssr85360 9 58134040 to 58134070 30 + TSS region transcription start site region 85360
Tssr85361 9 58134204 to 58134228 24 + TSS region transcription start site region 85361
Tssr85362 9 58134242 to 58134258 16 + TSS region transcription start site region 85362
Tssr85363 9 58134264 to 58134271 7 + TSS region transcription start site region 85363
Tssr85364 9 58134274 to 58134281 7 + TSS region transcription start site region 85364
Tssr85365 9 58134288 to 58134300 12 + TSS region transcription start site region 85365
Tssr85366 9 58134321 to 58134343 22 + TSS region transcription start site region 85366
Tssr85367 9 58134353 to 58134360 7 + TSS region transcription start site region 85367
Tssr85368 9 58134718 to 58134735 17 + TSS region transcription start site region 85368
Tssr85369 9 58134804 to 58134823 19 + TSS region transcription start site region 85369
Tssr85370 9 58134879 to 58134891 12 + TSS region transcription start site region 85370
Tssr85371 9 58134895 to 58134900 5 + TSS region transcription start site region 85371
Tssr85372 9 58134910 to 58134931 21 + TSS region transcription start site region 85372
Tssr85373 9 58135015 to 58135029 14 + TSS region transcription start site region 85373
Tssr85374 9 58135044 to 58135078 34 + TSS region transcription start site region 85374
Tssr85375 9 58135080 to 58135102 22 + TSS region transcription start site region 85375
Tssr85376 9 58139550 to 58139554 4 + TSS region transcription start site region 85376
Islr 9 58156246 to 58159236 2990 - protein coding gene immunoglobulin superfamily containing leucine-rich repeat
Tssr89845 9 58156332 to 58156363 31 - TSS region transcription start site region 89845
Tssr89846 9 58158465 to 58158478 13 - TSS region transcription start site region 89846
Tssr89847 9 58158498 to 58158551 53 - TSS region transcription start site region 89847
Tssr89848 9 58159012 to 58159032 20 - TSS region transcription start site region 89848
Tssr89849 9 58159048 to 58159078 30 - TSS region transcription start site region 89849
Tssr89850 9 58159153 to 58159179 26 - TSS region transcription start site region 89850
Tssr89851 9 58159201 to 58159239 38 - TSS region transcription start site region 89851
Gm39344 9 58174444 to 58188312 13868 + lncRNA gene predicted gene, 39344
Gm47174 9 58192045 to 58192192 147 - unclassified gene predicted gene, 47174
Islr2 9 58196297 to 58204319 8022 - protein coding gene immunoglobulin superfamily containing leucine-rich repeat 2
Cpgi21839 9 58196582 to 58200020 3438 CpG island CpG island 21839
Tssr89852 9 58198432 to 58198470 38 - TSS region transcription start site region 89852
Tssr89853 9 58199121 to 58199132 11 - TSS region transcription start site region 89853
Tssr89854 9 58199686 to 58199702 16 - TSS region transcription start site region 89854
Tssr89855 9 58199733 to 58199756 23 - TSS region transcription start site region 89855
Tssr89856 9 58199761 to 58199772 11 - TSS region transcription start site region 89856
Tssr89857 9 58200447 to 58200468 21 - TSS region transcription start site region 89857
Cpgi21840 9 58201193 to 58202509 1316 CpG island CpG island 21840
Tssr89858 9 58201301 to 58201316 15 - TSS region transcription start site region 89858
Tssr89859 9 58201325 to 58201352 27 - TSS region transcription start site region 89859
Tssr89860 9 58201356 to 58201383 27 - TSS region transcription start site region 89860
Tssr89861 9 58201395 to 58201406 11 - TSS region transcription start site region 89861
Tssr89862 9 58201474 to 58201519 45 - TSS region transcription start site region 89862
Tssr89863 9 58201525 to 58201544 19 - TSS region transcription start site region 89863
Tssr89864 9 58201551 to 58201618 67 - TSS region transcription start site region 89864
Tssr89865 9 58201627 to 58201638 11 - TSS region transcription start site region 89865
Tssr89866 9 58201685 to 58201697 12 - TSS region transcription start site region 89866
Tssr89867 9 58201705 to 58201725 20 - TSS region transcription start site region 89867
Tssr89868 9 58201902 to 58201913 11 - TSS region transcription start site region 89868
Tssr89869 9 58201935 to 58201942 7 - TSS region transcription start site region 89869
Tssr89870 9 58201961 to 58201974 13 - TSS region transcription start site region 89870
Tssr89871 9 58201982 to 58202023 41 - TSS region transcription start site region 89871
Tssr89872 9 58202026 to 58202051 25 - TSS region transcription start site region 89872
Tssr89873 9 58202066 to 58202075 9 - TSS region transcription start site region 89873
Tssr89874 9 58202161 to 58202190 29 - TSS region transcription start site region 89874
Tssr89875 9 58202256 to 58202271 15 - TSS region transcription start site region 89875
Tssr89876 9 58202281 to 58202295 14 - TSS region transcription start site region 89876
Tssr89877 9 58202301 to 58202322 21 - TSS region transcription start site region 89877
Tssr89878 9 58202350 to 58202363 13 - TSS region transcription start site region 89878
Tssr89879 9 58202747 to 58202772 25 - TSS region transcription start site region 89879
Tssr85377 9 58202855 to 58202866 11 + TSS region transcription start site region 85377
1600029O15Rik 9 58202897 to 58208808 5911 + pseudogene RIKEN cDNA 1600029O15 gene
Tssr89880 9 58202922 to 58202942 20 - TSS region transcription start site region 89880
Cpgi21841 9 58203801 to 58204426 625 CpG island CpG island 21841