Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 9:57929472-58099507

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26 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Ubl7 9 57910979 to 57929968 18989 + protein coding gene ubiquitin-like 7 (bone marrow stromal cell-derived)
Cpgi21837 9 57939589 to 57941328 1739 CpG island CpG island 21837
Tssr85344 9 57940104 to 57940120 16 + TSS region transcription start site region 85344
Sema7a 9 57940135 to 57962865 22730 + protein coding gene sema domain, immunoglobulin domain (Ig), and GPI membrane anchor, (semaphorin) 7A
Tssr89838 9 57946576 to 57946587 11 - TSS region transcription start site region 89838
Tssr85345 9 57959995 to 57959998 3 + TSS region transcription start site region 85345
Tssr85346 9 57972512 to 57972526 14 + TSS region transcription start site region 85346
Tssr85347 9 57998036 to 57998058 22 + TSS region transcription start site region 85347
Tssr85348 9 57998068 to 57998093 25 + TSS region transcription start site region 85348
Gm17322 9 58005812 to 58006400 588 + lincRNA gene predicted gene, 17322
Cyp11a1 9 58006411 to 58027023 20612 + protein coding gene cytochrome P450, family 11, subfamily a, polypeptide 1
Tssr85349 9 58014472 to 58014507 35 + TSS region transcription start site region 85349
Tssr85350 9 58014990 to 58015005 15 + TSS region transcription start site region 85350
Tssr85351 9 58016357 to 58016371 14 + TSS region transcription start site region 85351
Tssr85352 9 58021949 to 58021964 15 + TSS region transcription start site region 85352
Tssr89839 9 58025121 to 58025154 33 - TSS region transcription start site region 89839
Tssr85353 9 58026951 to 58026962 11 + TSS region transcription start site region 85353
Tssr2889 9 58026994 to 58026999 5 + TSS region transcription start site region 2889
Ccdc33 9 58028677 to 58118823 90146 - protein coding gene coiled-coil domain containing 33
Gm16130 9 58032274 to 58048997 16723 + antisense lncRNA gene predicted gene 16130
D9Mit141.1 9 58062475 to 58062591 116 DNA segment DNA segment, Chr 9, Massachusetts Institute of Technology 141.1
D9Mit141 9 58062603 to 58062707 104 DNA segment DNA segment, Chr 9, Massachusetts Institute of Technology 141
Stra6 9 58063788 to 58153996 90208 + protein coding gene stimulated by retinoic acid gene 6
Tssr85354 9 58079337 to 58079356 19 + TSS region transcription start site region 85354
Tssr85355 9 58079358 to 58079382 24 + TSS region transcription start site region 85355
Tssr89840 9 58094326 to 58094328 2 - TSS region transcription start site region 89840