Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 9:57701025-58121036

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94 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Fecq4 9 47631726 to 57897921 10266195 QTL fecundity QTL 4
Cyp1a1 9 57687928 to 57703824 15896 + protein coding gene cytochrome P450, family 1, subfamily a, polypeptide 1
Cpgi21831 9 57708391 to 57709331 940 CpG island CpG island 21831
Tssr85323 9 57708534 to 57708608 74 + TSS region transcription start site region 85323
Edc3 9 57708555 to 57750167 41612 + protein coding gene enhancer of mRNA decapping 3
Tssr2887 9 57708616 to 57708626 10 + TSS region transcription start site region 2887
Tssr85324 9 57708631 to 57708661 30 + TSS region transcription start site region 85324
Clk3 9 57750709 to 57765860 15151 - protein coding gene CDC-like kinase 3
Tssr89819 9 57756288 to 57756292 4 - TSS region transcription start site region 89819
Tssr89820 9 57761922 to 57761925 3 - TSS region transcription start site region 89820
Tssr89821 9 57761938 to 57761956 18 - TSS region transcription start site region 89821
Tssr89822 9 57761968 to 57761980 12 - TSS region transcription start site region 89822
Cpgi21832 9 57764179 to 57766338 2159 CpG island CpG island 21832
Tssr85325 9 57764449 to 57764463 14 + TSS region transcription start site region 85325
Tssr89823 9 57764683 to 57764693 10 - TSS region transcription start site region 89823
Tssr89824 9 57764842 to 57764856 14 - TSS region transcription start site region 89824
Tssr89825 9 57765066 to 57765084 18 - TSS region transcription start site region 89825
Tssr89826 9 57765093 to 57765148 55 - TSS region transcription start site region 89826
Tssr85326 9 57765146 to 57765199 53 + TSS region transcription start site region 85326
Tssr85327 9 57765205 to 57765235 30 + TSS region transcription start site region 85327
Tssr89827 9 57765540 to 57765555 15 - TSS region transcription start site region 89827
Tssr89828 9 57765567 to 57765600 33 - TSS region transcription start site region 89828
Tssr89829 9 57765609 to 57765632 23 - TSS region transcription start site region 89829
Tssr89830 9 57765799 to 57765816 17 - TSS region transcription start site region 89830
Tssr89831 9 57765845 to 57765876 31 - TSS region transcription start site region 89831
Tssr89832 9 57765879 to 57765908 29 - TSS region transcription start site region 89832
Tssr89833 9 57765911 to 57765922 11 - TSS region transcription start site region 89833
Tssr89834 9 57766214 to 57766229 15 - TSS region transcription start site region 89834
Cpgi21833 9 57766531 to 57766795 264 CpG island CpG island 21833
Tssr85328 9 57767435 to 57767445 10 + TSS region transcription start site region 85328
Gm32510 9 57767965 to 57770108 2143 + lncRNA gene predicted gene, 32510
Tssr2888 9 57770664 to 57770668 4 + TSS region transcription start site region 2888
Tssr85329 9 57777829 to 57777867 38 + TSS region transcription start site region 85329
Gm17231 9 57777865 to 57834295 56430 + antisense lncRNA gene predicted gene 17231
Arid3b 9 57790353 to 57836793 46440 - protein coding gene AT rich interactive domain 3B (BRIGHT-like)
Tssr89835 9 57792187 to 57792209 22 - TSS region transcription start site region 89835
Tssr89836 9 57796562 to 57796589 27 - TSS region transcription start site region 89836
Tssr85330 9 57825918 to 57825945 27 + TSS region transcription start site region 85330
Tssr85331 9 57827284 to 57827296 12 + TSS region transcription start site region 85331
Cpgi21834 9 57831364 to 57831869 505 CpG island CpG island 21834
Cpgi21835 9 57836177 to 57837121 944 CpG island CpG island 21835
Tssr89837 9 57836713 to 57836805 92 - TSS region transcription start site region 89837
Gm7547 9 57837863 to 57838293 430 - pseudogene predicted gene 7547
Gm9715 9 57846350 to 57847223 873 + pseudogene predicted gene 9715
D9Mit48 9 57897764 to 57897921 157 DNA segment DNA segment, Chr 9, Massachusetts Institute of Technology 48
Neogq1 9 57897764 to 86239920 28342156 QTL neonatal growth QTL 1
Brm1 9 57897764 to 57897921 157 QTL brachyury modifier 1
Bbaa9 9 57897764 to 71574472 13676708 QTL B.burgdorferi-associated arthritis 9
Cpgi21836 9 57910465 to 57911220 755 CpG island CpG island 21836
Tssr85332 9 57910473 to 57910490 17 + TSS region transcription start site region 85332
Tssr85333 9 57910506 to 57910530 24 + TSS region transcription start site region 85333
Tssr85334 9 57910542 to 57910552 10 + TSS region transcription start site region 85334
Tssr85335 9 57910974 to 57911023 49 + TSS region transcription start site region 85335
Ubl7 9 57910979 to 57929968 18989 + protein coding gene ubiquitin-like 7 (bone marrow stromal cell-derived)
Tssr85336 9 57911025 to 57911036 11 + TSS region transcription start site region 85336
Tssr85337 9 57911039 to 57911050 11 + TSS region transcription start site region 85337
Tssr85338 9 57911094 to 57911095 1 + TSS region transcription start site region 85338
Tssr85339 9 57911102 to 57911115 13 + TSS region transcription start site region 85339
Tssr85340 9 57911139 to 57911150 11 + TSS region transcription start site region 85340
Tssr85341 9 57922470 to 57922502 32 + TSS region transcription start site region 85341
Tssr85342 9 57922520 to 57922538 18 + TSS region transcription start site region 85342
Tssr85343 9 57922567 to 57922581 14 + TSS region transcription start site region 85343
Cpgi21837 9 57939589 to 57941328 1739 CpG island CpG island 21837
Tssr85344 9 57940104 to 57940120 16 + TSS region transcription start site region 85344
Sema7a 9 57940135 to 57962865 22730 + protein coding gene sema domain, immunoglobulin domain (Ig), and GPI membrane anchor, (semaphorin) 7A
Tssr89838 9 57946576 to 57946587 11 - TSS region transcription start site region 89838
Tssr85345 9 57959995 to 57959998 3 + TSS region transcription start site region 85345
Tssr85346 9 57972512 to 57972526 14 + TSS region transcription start site region 85346
Tssr85347 9 57998036 to 57998058 22 + TSS region transcription start site region 85347
Tssr85348 9 57998068 to 57998093 25 + TSS region transcription start site region 85348
Gm17322 9 58005812 to 58006400 588 + lincRNA gene predicted gene, 17322
Cyp11a1 9 58006411 to 58027023 20612 + protein coding gene cytochrome P450, family 11, subfamily a, polypeptide 1
Tssr85349 9 58014472 to 58014507 35 + TSS region transcription start site region 85349
Tssr85350 9 58014990 to 58015005 15 + TSS region transcription start site region 85350
Tssr85351 9 58016357 to 58016371 14 + TSS region transcription start site region 85351
Tssr85352 9 58021949 to 58021964 15 + TSS region transcription start site region 85352
Tssr89839 9 58025121 to 58025154 33 - TSS region transcription start site region 89839
Tssr85353 9 58026951 to 58026962 11 + TSS region transcription start site region 85353
Tssr2889 9 58026994 to 58026999 5 + TSS region transcription start site region 2889
Ccdc33 9 58028677 to 58118823 90146 - protein coding gene coiled-coil domain containing 33
Gm16130 9 58032274 to 58048997 16723 + antisense lncRNA gene predicted gene 16130
D9Mit141.1 9 58062475 to 58062591 116 DNA segment DNA segment, Chr 9, Massachusetts Institute of Technology 141.1
D9Mit141 9 58062603 to 58062707 104 DNA segment DNA segment, Chr 9, Massachusetts Institute of Technology 141
Stra6 9 58063788 to 58153996 90208 + protein coding gene stimulated by retinoic acid gene 6
Tssr85354 9 58079337 to 58079356 19 + TSS region transcription start site region 85354
Tssr85355 9 58079358 to 58079382 24 + TSS region transcription start site region 85355
Tssr89840 9 58094326 to 58094328 2 - TSS region transcription start site region 89840
Tssr89841 9 58102258 to 58102269 11 - TSS region transcription start site region 89841
Tssr89842 9 58102272 to 58102305 33 - TSS region transcription start site region 89842
Tssr89843 9 58102313 to 58102316 3 - TSS region transcription start site region 89843
1700120E02Rik 9 58102344 to 58103055 711 unclassified gene RIKEN cDNA 1700120E02 gene
Cpgi21838 9 58113416 to 58113709 293 CpG island CpG island 21838
Gm16131 9 58117815 to 58118989 1174 + antisense lncRNA gene predicted gene 16131
Tssr89844 9 58118818 to 58118832 14 - TSS region transcription start site region 89844