Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.



Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 9:57626937-57733655

41 genes found.

Gene symbol	Chromo- some	Coordinates (bp, mm10)	Size (bp)	Strand	Feature Type	Gene name
Csk	9	57626646 to 57653631	26985	-	protein coding gene	c-src tyrosine kinase
Tssr89800	9	57627027 to 57627072	45	-	TSS region	transcription start site region 89800
Cpgi21827	9	57640500 to 57640721	221		CpG island	CpG island 21827
Tssr89801	9	57644237 to 57644240	3	-	TSS region	transcription start site region 89801
Cpgi21828	9	57644705 to 57646102	1397		CpG island	CpG island 21828
Tssr89802	9	57645125 to 57645136	11	-	TSS region	transcription start site region 89802
Tssr89803	9	57645154 to 57645180	26	-	TSS region	transcription start site region 89803
Tssr89804	9	57645188 to 57645207	19	-	TSS region	transcription start site region 89804
Tssr85319	9	57645261 to 57645279	18	+	TSS region	transcription start site region 85319
Tssr89805	9	57645432 to 57645443	11	-	TSS region	transcription start site region 89805
Tssr89806	9	57645532 to 57645541	9	-	TSS region	transcription start site region 89806
Tssr89807	9	57645561 to 57645672	111	-	TSS region	transcription start site region 89807
Tssr85320	9	57645793 to 57645797	4	+	TSS region	transcription start site region 85320
Tssr89808	9	57646710 to 57646729	19	-	TSS region	transcription start site region 89808
Tssr89809	9	57646746 to 57646769	23	-	TSS region	transcription start site region 89809
Tssr85321	9	57652719 to 57652742	23	+	TSS region	transcription start site region 85321
Tssr89810	9	57653431 to 57653455	24	-	TSS region	transcription start site region 89810
Tssr89811	9	57653464 to 57653479	15	-	TSS region	transcription start site region 89811
Cyp1a2	9	57676937 to 57683655	6718	-	protein coding gene	cytochrome P450, family 1, subfamily a, polypeptide 2
Tssr89812	9	57677140 to 57677145	5	-	TSS region	transcription start site region 89812
Tssr89813	9	57677199 to 57677208	9	-	TSS region	transcription start site region 89813
D9Mit101.2	9	57680203 to 57680377	174		DNA segment	DNA segment, Chr 9, Massachusetts Institute of Technology 101.2
D9Mit101	9	57680247 to 57680587	340		DNA segment	DNA Segment, Chr 9, Massachusetts Institute of Technology 101
D9Mit101.1	9	57680594 to 57680732	138		DNA segment	DNA segment, Chr 9, Massachusetts Institute of Technology 101.1
Cpgi21829	9	57681587 to 57682028	441		CpG island	CpG island 21829
Tssr89814	9	57681798 to 57681809	11	-	TSS region	transcription start site region 89814
Tssr89815	9	57681904 to 57681914	10	-	TSS region	transcription start site region 89815
Tssr89816	9	57682022 to 57682032	10	-	TSS region	transcription start site region 89816
Tssr89817	9	57682206 to 57682216	10	-	TSS region	transcription start site region 89817
Tssr89818	9	57683644 to 57683663	19	-	TSS region	transcription start site region 89818
D9Mit21	9	57684209 to 57684399	190		DNA segment	DNA segment, Chr 9, Massachusetts Institute of Technology 21
Vmbic5	9	57684209 to 65923895	8239686		QTL	ventral midbrain iron content 5
Cyp1a1	9	57687928 to 57703824	15896	+	protein coding gene	cytochrome P450, family 1, subfamily a, polypeptide 1
Cpgi21830	9	57696206 to 57697192	986		CpG island	CpG island 21830
Tssr85322	9	57697612 to 57697616	4	+	TSS region	transcription start site region 85322
D9Mit28	9	57699693 to 57699838	145		DNA segment	DNA segment, Chr 9, Massachusetts Institute of Technology 28
Cpgi21831	9	57708391 to 57709331	940		CpG island	CpG island 21831
Tssr85323	9	57708534 to 57708608	74	+	TSS region	transcription start site region 85323
Edc3	9	57708555 to 57750167	41612	+	protein coding gene	enhancer of mRNA decapping 3
Tssr2887	9	57708616 to 57708626	10	+	TSS region	transcription start site region 2887
Tssr85324	9	57708631 to 57708661	30	+	TSS region	transcription start site region 85324