Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 9:57525125-57765136

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83 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Cox5a 9 57521274 to 57532426 11152 + protein coding gene cytochrome c oxidase subunit 5A
Tssr85310 9 57528946 to 57528955 9 + TSS region transcription start site region 85310
Gm26631 9 57531287 to 57537629 6342 - bidirectional promoter lncRNA gene predicted gene, 26631
Cpgi21821 9 57537279 to 57538158 879 CpG island CpG island 21821
Tssr85311 9 57537518 to 57537577 59 + TSS region transcription start site region 85311
Fam219b 9 57537528 to 57543184 5656 + protein coding gene family with sequence similarity 219, member B
Tssr85312 9 57537583 to 57537634 51 + TSS region transcription start site region 85312
Tssr85313 9 57541475 to 57541479 4 + TSS region transcription start site region 85313
Mpi 9 57544256 to 57552763 8507 - protein coding gene mannose phosphate isomerase
Tssr89794 9 57552281 to 57552289 8 - TSS region transcription start site region 89794
Cpgi21822 9 57552395 to 57552864 469 CpG island CpG island 21822
Tssr89795 9 57552722 to 57552757 35 - TSS region transcription start site region 89795
Tssr89796 9 57552760 to 57552771 11 - TSS region transcription start site region 89796
Cpgi21823 9 57553261 to 57553437 176 CpG island CpG island 21823
Cpgi21824 9 57560810 to 57561324 514 CpG island CpG island 21824
Tssr85314 9 57560934 to 57560989 55 + TSS region transcription start site region 85314
Scamp2 9 57560943 to 57588795 27852 + protein coding gene secretory carrier membrane protein 2
Tssr85315 9 57561001 to 57561012 11 + TSS region transcription start site region 85315
Cpgi21825 9 57589086 to 57589853 767 CpG island CpG island 21825
Tssr85316 9 57589442 to 57589482 40 + TSS region transcription start site region 85316
Ulk3 9 57589452 to 57596233 6781 + protein coding gene unc-51-like kinase 3
Tssr85317 9 57589485 to 57589498 13 + TSS region transcription start site region 85317
Tssr85318 9 57589508 to 57589566 58 + TSS region transcription start site region 85318
Cplx3 9 57599992 to 57606281 6289 - protein coding gene complexin 3
Feml2 9 57600000 to 63300000 5700000 QTL femur length in high growth mice 2
Cpgi21826 9 57605973 to 57606395 422 CpG island CpG island 21826
Tssr89797 9 57606194 to 57606205 11 - TSS region transcription start site region 89797
Tssr89798 9 57606234 to 57606260 26 - TSS region transcription start site region 89798
Gm32392 9 57606624 to 57616089 9465 + lncRNA gene predicted gene, 32392
Lman1l 9 57607085 to 57620774 13689 - protein coding gene lectin, mannose-binding 1 like
Tssr89799 9 57620760 to 57620778 18 - TSS region transcription start site region 89799
Csk 9 57626646 to 57653631 26985 - protein coding gene c-src tyrosine kinase
Tssr89800 9 57627027 to 57627072 45 - TSS region transcription start site region 89800
Cpgi21827 9 57640500 to 57640721 221 CpG island CpG island 21827
Tssr89801 9 57644237 to 57644240 3 - TSS region transcription start site region 89801
Cpgi21828 9 57644705 to 57646102 1397 CpG island CpG island 21828
Tssr89802 9 57645125 to 57645136 11 - TSS region transcription start site region 89802
Tssr89803 9 57645154 to 57645180 26 - TSS region transcription start site region 89803
Tssr89804 9 57645188 to 57645207 19 - TSS region transcription start site region 89804
Tssr85319 9 57645261 to 57645279 18 + TSS region transcription start site region 85319
Tssr89805 9 57645432 to 57645443 11 - TSS region transcription start site region 89805
Tssr89806 9 57645532 to 57645541 9 - TSS region transcription start site region 89806
Tssr89807 9 57645561 to 57645672 111 - TSS region transcription start site region 89807
Tssr85320 9 57645793 to 57645797 4 + TSS region transcription start site region 85320
Tssr89808 9 57646710 to 57646729 19 - TSS region transcription start site region 89808
Tssr89809 9 57646746 to 57646769 23 - TSS region transcription start site region 89809
Tssr85321 9 57652719 to 57652742 23 + TSS region transcription start site region 85321
Tssr89810 9 57653431 to 57653455 24 - TSS region transcription start site region 89810
Tssr89811 9 57653464 to 57653479 15 - TSS region transcription start site region 89811
Cyp1a2 9 57676937 to 57683655 6718 - protein coding gene cytochrome P450, family 1, subfamily a, polypeptide 2
Tssr89812 9 57677140 to 57677145 5 - TSS region transcription start site region 89812
Tssr89813 9 57677199 to 57677208 9 - TSS region transcription start site region 89813
D9Mit101.2 9 57680203 to 57680377 174 DNA segment DNA segment, Chr 9, Massachusetts Institute of Technology 101.2
D9Mit101 9 57680247 to 57680587 340 DNA segment DNA Segment, Chr 9, Massachusetts Institute of Technology 101
D9Mit101.1 9 57680594 to 57680732 138 DNA segment DNA segment, Chr 9, Massachusetts Institute of Technology 101.1
Cpgi21829 9 57681587 to 57682028 441 CpG island CpG island 21829
Tssr89814 9 57681798 to 57681809 11 - TSS region transcription start site region 89814
Tssr89815 9 57681904 to 57681914 10 - TSS region transcription start site region 89815
Tssr89816 9 57682022 to 57682032 10 - TSS region transcription start site region 89816
Tssr89817 9 57682206 to 57682216 10 - TSS region transcription start site region 89817
Tssr89818 9 57683644 to 57683663 19 - TSS region transcription start site region 89818
Vmbic5 9 57684209 to 65923895 8239686 QTL ventral midbrain iron content 5
D9Mit21 9 57684209 to 57684399 190 DNA segment DNA segment, Chr 9, Massachusetts Institute of Technology 21
Cyp1a1 9 57687928 to 57703824 15896 + protein coding gene cytochrome P450, family 1, subfamily a, polypeptide 1
Cpgi21830 9 57696206 to 57697192 986 CpG island CpG island 21830
Tssr85322 9 57697612 to 57697616 4 + TSS region transcription start site region 85322
D9Mit28 9 57699693 to 57699838 145 DNA segment DNA segment, Chr 9, Massachusetts Institute of Technology 28
Cpgi21831 9 57708391 to 57709331 940 CpG island CpG island 21831
Tssr85323 9 57708534 to 57708608 74 + TSS region transcription start site region 85323
Edc3 9 57708555 to 57750167 41612 + protein coding gene enhancer of mRNA decapping 3
Tssr2887 9 57708616 to 57708626 10 + TSS region transcription start site region 2887
Tssr85324 9 57708631 to 57708661 30 + TSS region transcription start site region 85324
Clk3 9 57750709 to 57765860 15151 - protein coding gene CDC-like kinase 3
Tssr89819 9 57756288 to 57756292 4 - TSS region transcription start site region 89819
Tssr89820 9 57761922 to 57761925 3 - TSS region transcription start site region 89820
Tssr89821 9 57761938 to 57761956 18 - TSS region transcription start site region 89821
Tssr89822 9 57761968 to 57761980 12 - TSS region transcription start site region 89822
Cpgi21832 9 57764179 to 57766338 2159 CpG island CpG island 21832
Tssr85325 9 57764449 to 57764463 14 + TSS region transcription start site region 85325
Tssr89823 9 57764683 to 57764693 10 - TSS region transcription start site region 89823
Tssr89824 9 57764842 to 57764856 14 - TSS region transcription start site region 89824
Tssr89825 9 57765066 to 57765084 18 - TSS region transcription start site region 89825
Tssr89826 9 57765093 to 57765148 55 - TSS region transcription start site region 89826