Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.



Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 9:57434615-57535302

37 genes found.

Gene symbol	Chromo- some	Coordinates (bp, mm10)	Size (bp)	Strand	Feature Type	Gene name
Ppcdc	9	57385095 to 57440124	55029	-	protein coding gene	phosphopantothenoylcysteine decarboxylase
Tssr89781	9	57434921 to 57434932	11	-	TSS region	transcription start site region 89781
Tssr89782	9	57434937 to 57434953	16	-	TSS region	transcription start site region 89782
Tssr89783	9	57434959 to 57434985	26	-	TSS region	transcription start site region 89783
Cpgi21815	9	57439866 to 57440195	329		CpG island	CpG island 21815
Tssr89784	9	57440084 to 57440129	45	-	TSS region	transcription start site region 89784
Scamp5	9	57441327 to 57468060	26733	-	protein coding gene	secretory carrier membrane protein 5
Tssr89785	9	57443092 to 57443108	16	-	TSS region	transcription start site region 89785
Tssr89786	9	57443116 to 57443126	10	-	TSS region	transcription start site region 89786
Tssr89787	9	57443333 to 57443364	31	-	TSS region	transcription start site region 89787
Tssr89788	9	57443559 to 57443570	11	-	TSS region	transcription start site region 89788
Tssr89789	9	57447706 to 57447738	32	-	TSS region	transcription start site region 89789
Tssr89790	9	57449166 to 57449202	36	-	TSS region	transcription start site region 89790
Tssr89791	9	57449326 to 57449340	14	-	TSS region	transcription start site region 89791
Cpgi21816	9	57467448 to 57468416	968		CpG island	CpG island 21816
Tssr89792	9	57467985 to 57468074	89	-	TSS region	transcription start site region 89792
Tssr89793	9	57468980 to 57469014	34	-	TSS region	transcription start site region 89793
D9Wsu149	9	57482963 to 57483538	575	+	pseudogene	DNA segment, Chr 9, Wayne State University 149
Tssr85302	9	57483908 to 57483917	9	+	TSS region	transcription start site region 85302
Gm6166	9	57483963 to 57484371	408	+	pseudogene	predicted gene 6166
Gm18103	9	57484615 to 57485302	687	+	pseudogene	predicted gene, 18103
Cpgi21817	9	57501880 to 57502199	319		CpG island	CpG island 21817
Cpgi21818	9	57503457 to 57503699	242		CpG island	CpG island 21818
Cpgi21819	9	57503717 to 57504892	1175		CpG island	CpG island 21819
Tssr85303	9	57504012 to 57504068	56	+	TSS region	transcription start site region 85303
Rpp25	9	57504102 to 57505447	1345	+	protein coding gene	ribonuclease P/MRP 25 subunit
Tssr85304	9	57504531 to 57504562	31	+	TSS region	transcription start site region 85304
Tssr85305	9	57504566 to 57504596	30	+	TSS region	transcription start site region 85305
Tssr85306	9	57520529 to 57520560	31	+	TSS region	transcription start site region 85306
Cpgi21820	9	57520887 to 57521962	1075		CpG island	CpG island 21820
Tssr85307	9	57521196 to 57521203	7	+	TSS region	transcription start site region 85307
Tssr85308	9	57521234 to 57521314	80	+	TSS region	transcription start site region 85308
Cox5a	9	57521274 to 57532426	11152	+	protein coding gene	cytochrome c oxidase subunit 5A
Tssr85309	9	57521333 to 57521342	9	+	TSS region	transcription start site region 85309
Tssr2886	9	57521377 to 57521378	1	+	TSS region	transcription start site region 2886
Tssr85310	9	57528946 to 57528955	9	+	TSS region	transcription start site region 85310
Gm26631	9	57531287 to 57537629	6342	-	bidirectional promoter lncRNA gene	predicted gene, 26631