Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 9:57289321-58979343

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397 genes found. Result truncated to 200 rows.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Fecq4 9 47631726 to 57897921 10266195 QTL fecundity QTL 4
Tssr89775 9 57295751 to 57295762 11 - TSS region transcription start site region 89775
Tssr85297 9 57296598 to 57296607 9 + TSS region transcription start site region 85297
Tssr89776 9 57299836 to 57299859 23 - TSS region transcription start site region 89776
Gm39343 9 57309567 to 57331617 22050 + lncRNA gene predicted gene, 39343
D9Mit314 9 57314406 to 57314527 121 DNA segment DNA Segment, Chr 9, Massachusetts Institute of Technology-314
Gm18996 9 57328661 to 57329415 754 - pseudogene predicted gene, 18996
Tssr85298 9 57334066 to 57334077 11 + TSS region transcription start site region 85298
Gm5121 9 57334128 to 57334754 626 + pseudogene predicted gene 5121
Ppcdc 9 57385095 to 57440124 55029 - protein coding gene phosphopantothenoylcysteine decarboxylase
4930430J02Rik 9 57391070 to 57400364 9294 + lncRNA gene RIKEN cDNA 4930430J02 gene
Tssr89777 9 57421320 to 57421371 51 - TSS region transcription start site region 89777
Tssr89778 9 57421373 to 57421386 13 - TSS region transcription start site region 89778
Tssr89779 9 57426090 to 57426114 24 - TSS region transcription start site region 89779
Tssr89780 9 57428014 to 57428025 11 - TSS region transcription start site region 89780
Tssr85299 9 57428131 to 57428146 15 + TSS region transcription start site region 85299
Tssr85300 9 57428166 to 57428177 11 + TSS region transcription start site region 85300
Tssr85301 9 57428179 to 57428190 11 + TSS region transcription start site region 85301
Tssr89781 9 57434921 to 57434932 11 - TSS region transcription start site region 89781
Tssr89782 9 57434937 to 57434953 16 - TSS region transcription start site region 89782
Tssr89783 9 57434959 to 57434985 26 - TSS region transcription start site region 89783
Cpgi21815 9 57439866 to 57440195 329 CpG island CpG island 21815
Tssr89784 9 57440084 to 57440129 45 - TSS region transcription start site region 89784
Scamp5 9 57441327 to 57468060 26733 - protein coding gene secretory carrier membrane protein 5
Tssr89785 9 57443092 to 57443108 16 - TSS region transcription start site region 89785
Tssr89786 9 57443116 to 57443126 10 - TSS region transcription start site region 89786
Tssr89787 9 57443333 to 57443364 31 - TSS region transcription start site region 89787
Tssr89788 9 57443559 to 57443570 11 - TSS region transcription start site region 89788
Tssr89789 9 57447706 to 57447738 32 - TSS region transcription start site region 89789
Tssr89790 9 57449166 to 57449202 36 - TSS region transcription start site region 89790
Tssr89791 9 57449326 to 57449340 14 - TSS region transcription start site region 89791
Cpgi21816 9 57467448 to 57468416 968 CpG island CpG island 21816
Tssr89792 9 57467985 to 57468074 89 - TSS region transcription start site region 89792
Tssr89793 9 57468980 to 57469014 34 - TSS region transcription start site region 89793
D9Wsu149 9 57482963 to 57483538 575 + pseudogene DNA segment, Chr 9, Wayne State University 149
Tssr85302 9 57483908 to 57483917 9 + TSS region transcription start site region 85302
Gm6166 9 57483963 to 57484371 408 + pseudogene predicted gene 6166
Gm18103 9 57484615 to 57485302 687 + pseudogene predicted gene, 18103
Cpgi21817 9 57501880 to 57502199 319 CpG island CpG island 21817
Cpgi21818 9 57503457 to 57503699 242 CpG island CpG island 21818
Cpgi21819 9 57503717 to 57504892 1175 CpG island CpG island 21819
Tssr85303 9 57504012 to 57504068 56 + TSS region transcription start site region 85303
Rpp25 9 57504102 to 57505447 1345 + protein coding gene ribonuclease P/MRP 25 subunit
Tssr85304 9 57504531 to 57504562 31 + TSS region transcription start site region 85304
Tssr85305 9 57504566 to 57504596 30 + TSS region transcription start site region 85305
Tssr85306 9 57520529 to 57520560 31 + TSS region transcription start site region 85306
Cpgi21820 9 57520887 to 57521962 1075 CpG island CpG island 21820
Tssr85307 9 57521196 to 57521203 7 + TSS region transcription start site region 85307
Tssr85308 9 57521234 to 57521314 80 + TSS region transcription start site region 85308
Cox5a 9 57521274 to 57532426 11152 + protein coding gene cytochrome c oxidase subunit 5A
Tssr85309 9 57521333 to 57521342 9 + TSS region transcription start site region 85309
Tssr2886 9 57521377 to 57521378 1 + TSS region transcription start site region 2886
Tssr85310 9 57528946 to 57528955 9 + TSS region transcription start site region 85310
Gm26631 9 57531287 to 57537629 6342 - bidirectional promoter lncRNA gene predicted gene, 26631
Cpgi21821 9 57537279 to 57538158 879 CpG island CpG island 21821
Tssr85311 9 57537518 to 57537577 59 + TSS region transcription start site region 85311
Fam219b 9 57537528 to 57543184 5656 + protein coding gene family with sequence similarity 219, member B
Tssr85312 9 57537583 to 57537634 51 + TSS region transcription start site region 85312
Tssr85313 9 57541475 to 57541479 4 + TSS region transcription start site region 85313
Mpi 9 57544256 to 57552763 8507 - protein coding gene mannose phosphate isomerase
Tssr89794 9 57552281 to 57552289 8 - TSS region transcription start site region 89794
Cpgi21822 9 57552395 to 57552864 469 CpG island CpG island 21822
Tssr89795 9 57552722 to 57552757 35 - TSS region transcription start site region 89795
Tssr89796 9 57552760 to 57552771 11 - TSS region transcription start site region 89796
Cpgi21823 9 57553261 to 57553437 176 CpG island CpG island 21823
Cpgi21824 9 57560810 to 57561324 514 CpG island CpG island 21824
Tssr85314 9 57560934 to 57560989 55 + TSS region transcription start site region 85314
Scamp2 9 57560943 to 57588795 27852 + protein coding gene secretory carrier membrane protein 2
Tssr85315 9 57561001 to 57561012 11 + TSS region transcription start site region 85315
Cpgi21825 9 57589086 to 57589853 767 CpG island CpG island 21825
Tssr85316 9 57589442 to 57589482 40 + TSS region transcription start site region 85316
Ulk3 9 57589452 to 57596233 6781 + protein coding gene unc-51-like kinase 3
Tssr85317 9 57589485 to 57589498 13 + TSS region transcription start site region 85317
Tssr85318 9 57589508 to 57589566 58 + TSS region transcription start site region 85318
Cplx3 9 57599992 to 57606281 6289 - protein coding gene complexin 3
Feml2 9 57600000 to 63300000 5700000 QTL femur length in high growth mice 2
Cpgi21826 9 57605973 to 57606395 422 CpG island CpG island 21826
Tssr89797 9 57606194 to 57606205 11 - TSS region transcription start site region 89797
Tssr89798 9 57606234 to 57606260 26 - TSS region transcription start site region 89798
Gm32392 9 57606624 to 57616089 9465 + lncRNA gene predicted gene, 32392
Lman1l 9 57607085 to 57620774 13689 - protein coding gene lectin, mannose-binding 1 like
Tssr89799 9 57620760 to 57620778 18 - TSS region transcription start site region 89799
Csk 9 57626646 to 57653631 26985 - protein coding gene c-src tyrosine kinase
Tssr89800 9 57627027 to 57627072 45 - TSS region transcription start site region 89800
Cpgi21827 9 57640500 to 57640721 221 CpG island CpG island 21827
Tssr89801 9 57644237 to 57644240 3 - TSS region transcription start site region 89801
Cpgi21828 9 57644705 to 57646102 1397 CpG island CpG island 21828
Tssr89802 9 57645125 to 57645136 11 - TSS region transcription start site region 89802
Tssr89803 9 57645154 to 57645180 26 - TSS region transcription start site region 89803
Tssr89804 9 57645188 to 57645207 19 - TSS region transcription start site region 89804
Tssr85319 9 57645261 to 57645279 18 + TSS region transcription start site region 85319
Tssr89805 9 57645432 to 57645443 11 - TSS region transcription start site region 89805
Tssr89806 9 57645532 to 57645541 9 - TSS region transcription start site region 89806
Tssr89807 9 57645561 to 57645672 111 - TSS region transcription start site region 89807
Tssr85320 9 57645793 to 57645797 4 + TSS region transcription start site region 85320
Tssr89808 9 57646710 to 57646729 19 - TSS region transcription start site region 89808
Tssr89809 9 57646746 to 57646769 23 - TSS region transcription start site region 89809
Tssr85321 9 57652719 to 57652742 23 + TSS region transcription start site region 85321
Tssr89810 9 57653431 to 57653455 24 - TSS region transcription start site region 89810
Tssr89811 9 57653464 to 57653479 15 - TSS region transcription start site region 89811
Cyp1a2 9 57676937 to 57683655 6718 - protein coding gene cytochrome P450, family 1, subfamily a, polypeptide 2
Tssr89812 9 57677140 to 57677145 5 - TSS region transcription start site region 89812
Tssr89813 9 57677199 to 57677208 9 - TSS region transcription start site region 89813
D9Mit101.2 9 57680203 to 57680377 174 DNA segment DNA segment, Chr 9, Massachusetts Institute of Technology 101.2
D9Mit101 9 57680247 to 57680587 340 DNA segment DNA Segment, Chr 9, Massachusetts Institute of Technology 101
D9Mit101.1 9 57680594 to 57680732 138 DNA segment DNA segment, Chr 9, Massachusetts Institute of Technology 101.1
Cpgi21829 9 57681587 to 57682028 441 CpG island CpG island 21829
Tssr89814 9 57681798 to 57681809 11 - TSS region transcription start site region 89814
Tssr89815 9 57681904 to 57681914 10 - TSS region transcription start site region 89815
Tssr89816 9 57682022 to 57682032 10 - TSS region transcription start site region 89816
Tssr89817 9 57682206 to 57682216 10 - TSS region transcription start site region 89817
Tssr89818 9 57683644 to 57683663 19 - TSS region transcription start site region 89818
Vmbic5 9 57684209 to 65923895 8239686 QTL ventral midbrain iron content 5
D9Mit21 9 57684209 to 57684399 190 DNA segment DNA segment, Chr 9, Massachusetts Institute of Technology 21
Cyp1a1 9 57687928 to 57703824 15896 + protein coding gene cytochrome P450, family 1, subfamily a, polypeptide 1
Cpgi21830 9 57696206 to 57697192 986 CpG island CpG island 21830
Tssr85322 9 57697612 to 57697616 4 + TSS region transcription start site region 85322
D9Mit28 9 57699693 to 57699838 145 DNA segment DNA segment, Chr 9, Massachusetts Institute of Technology 28
Cpgi21831 9 57708391 to 57709331 940 CpG island CpG island 21831
Tssr85323 9 57708534 to 57708608 74 + TSS region transcription start site region 85323
Edc3 9 57708555 to 57750167 41612 + protein coding gene enhancer of mRNA decapping 3
Tssr2887 9 57708616 to 57708626 10 + TSS region transcription start site region 2887
Tssr85324 9 57708631 to 57708661 30 + TSS region transcription start site region 85324
Clk3 9 57750709 to 57765860 15151 - protein coding gene CDC-like kinase 3
Tssr89819 9 57756288 to 57756292 4 - TSS region transcription start site region 89819
Tssr89820 9 57761922 to 57761925 3 - TSS region transcription start site region 89820
Tssr89821 9 57761938 to 57761956 18 - TSS region transcription start site region 89821
Tssr89822 9 57761968 to 57761980 12 - TSS region transcription start site region 89822
Cpgi21832 9 57764179 to 57766338 2159 CpG island CpG island 21832
Tssr85325 9 57764449 to 57764463 14 + TSS region transcription start site region 85325
Tssr89823 9 57764683 to 57764693 10 - TSS region transcription start site region 89823
Tssr89824 9 57764842 to 57764856 14 - TSS region transcription start site region 89824
Tssr89825 9 57765066 to 57765084 18 - TSS region transcription start site region 89825
Tssr89826 9 57765093 to 57765148 55 - TSS region transcription start site region 89826
Tssr85326 9 57765146 to 57765199 53 + TSS region transcription start site region 85326
Tssr85327 9 57765205 to 57765235 30 + TSS region transcription start site region 85327
Tssr89827 9 57765540 to 57765555 15 - TSS region transcription start site region 89827
Tssr89828 9 57765567 to 57765600 33 - TSS region transcription start site region 89828
Tssr89829 9 57765609 to 57765632 23 - TSS region transcription start site region 89829
Tssr89830 9 57765799 to 57765816 17 - TSS region transcription start site region 89830
Tssr89831 9 57765845 to 57765876 31 - TSS region transcription start site region 89831
Tssr89832 9 57765879 to 57765908 29 - TSS region transcription start site region 89832
Tssr89833 9 57765911 to 57765922 11 - TSS region transcription start site region 89833
Tssr89834 9 57766214 to 57766229 15 - TSS region transcription start site region 89834
Cpgi21833 9 57766531 to 57766795 264 CpG island CpG island 21833
Tssr85328 9 57767435 to 57767445 10 + TSS region transcription start site region 85328
Gm32510 9 57767965 to 57770108 2143 + lncRNA gene predicted gene, 32510
Tssr2888 9 57770664 to 57770668 4 + TSS region transcription start site region 2888
Tssr85329 9 57777829 to 57777867 38 + TSS region transcription start site region 85329
Gm17231 9 57777865 to 57834295 56430 + antisense lncRNA gene predicted gene 17231
Arid3b 9 57790353 to 57836793 46440 - protein coding gene AT rich interactive domain 3B (BRIGHT-like)
Tssr89835 9 57792187 to 57792209 22 - TSS region transcription start site region 89835
Tssr89836 9 57796562 to 57796589 27 - TSS region transcription start site region 89836
Tssr85330 9 57825918 to 57825945 27 + TSS region transcription start site region 85330
Tssr85331 9 57827284 to 57827296 12 + TSS region transcription start site region 85331
Cpgi21834 9 57831364 to 57831869 505 CpG island CpG island 21834
Cpgi21835 9 57836177 to 57837121 944 CpG island CpG island 21835
Tssr89837 9 57836713 to 57836805 92 - TSS region transcription start site region 89837
Gm7547 9 57837863 to 57838293 430 - pseudogene predicted gene 7547
Gm9715 9 57846350 to 57847223 873 + pseudogene predicted gene 9715
D9Mit48 9 57897764 to 57897921 157 DNA segment DNA segment, Chr 9, Massachusetts Institute of Technology 48
Brm1 9 57897764 to 57897921 157 QTL brachyury modifier 1
Bbaa9 9 57897764 to 71574472 13676708 QTL B.burgdorferi-associated arthritis 9
Neogq1 9 57897764 to 86239920 28342156 QTL neonatal growth QTL 1
Cpgi21836 9 57910465 to 57911220 755 CpG island CpG island 21836
Tssr85332 9 57910473 to 57910490 17 + TSS region transcription start site region 85332
Tssr85333 9 57910506 to 57910530 24 + TSS region transcription start site region 85333
Tssr85334 9 57910542 to 57910552 10 + TSS region transcription start site region 85334
Tssr85335 9 57910974 to 57911023 49 + TSS region transcription start site region 85335
Ubl7 9 57910979 to 57929968 18989 + protein coding gene ubiquitin-like 7 (bone marrow stromal cell-derived)
Tssr85336 9 57911025 to 57911036 11 + TSS region transcription start site region 85336
Tssr85337 9 57911039 to 57911050 11 + TSS region transcription start site region 85337
Tssr85338 9 57911094 to 57911095 1 + TSS region transcription start site region 85338
Tssr85339 9 57911102 to 57911115 13 + TSS region transcription start site region 85339
Tssr85340 9 57911139 to 57911150 11 + TSS region transcription start site region 85340
Tssr85341 9 57922470 to 57922502 32 + TSS region transcription start site region 85341
Tssr85342 9 57922520 to 57922538 18 + TSS region transcription start site region 85342
Tssr85343 9 57922567 to 57922581 14 + TSS region transcription start site region 85343
Cpgi21837 9 57939589 to 57941328 1739 CpG island CpG island 21837
Tssr85344 9 57940104 to 57940120 16 + TSS region transcription start site region 85344
Sema7a 9 57940135 to 57962865 22730 + protein coding gene sema domain, immunoglobulin domain (Ig), and GPI membrane anchor, (semaphorin) 7A
Tssr89838 9 57946576 to 57946587 11 - TSS region transcription start site region 89838
Tssr85345 9 57959995 to 57959998 3 + TSS region transcription start site region 85345
Tssr85346 9 57972512 to 57972526 14 + TSS region transcription start site region 85346
Tssr85347 9 57998036 to 57998058 22 + TSS region transcription start site region 85347
Tssr85348 9 57998068 to 57998093 25 + TSS region transcription start site region 85348
Gm17322 9 58005812 to 58006400 588 + lincRNA gene predicted gene, 17322
Cyp11a1 9 58006411 to 58027023 20612 + protein coding gene cytochrome P450, family 11, subfamily a, polypeptide 1
Tssr85349 9 58014472 to 58014507 35 + TSS region transcription start site region 85349
Tssr85350 9 58014990 to 58015005 15 + TSS region transcription start site region 85350
Tssr85351 9 58016357 to 58016371 14 + TSS region transcription start site region 85351
Tssr85352 9 58021949 to 58021964 15 + TSS region transcription start site region 85352
Tssr89839 9 58025121 to 58025154 33 - TSS region transcription start site region 89839
Tssr85353 9 58026951 to 58026962 11 + TSS region transcription start site region 85353
Tssr2889 9 58026994 to 58026999 5 + TSS region transcription start site region 2889
Ccdc33 9 58028677 to 58118823 90146 - protein coding gene coiled-coil domain containing 33
Gm16130 9 58032274 to 58048997 16723 + antisense lncRNA gene predicted gene 16130
D9Mit141.1 9 58062475 to 58062591 116 DNA segment DNA segment, Chr 9, Massachusetts Institute of Technology 141.1
D9Mit141 9 58062603 to 58062707 104 DNA segment DNA segment, Chr 9, Massachusetts Institute of Technology 141
Stra6 9 58063788 to 58153996 90208 + protein coding gene stimulated by retinoic acid gene 6