Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 9:57042187-58542209

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411 genes found. Result truncated to 200 rows.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Fecq4 9 47631726 to 57897921 10266195 QTL fecundity QTL 4
Ptpn9 9 56994968 to 57062808 67840 + protein coding gene protein tyrosine phosphatase, non-receptor type 9
Gm10658 9 57056897 to 57071966 15069 - antisense lncRNA gene predicted gene 10658
Tssr89752 9 57071850 to 57071862 12 - TSS region transcription start site region 89752
Tssr89753 9 57071879 to 57071905 26 - TSS region transcription start site region 89753
Cpgi21807 9 57071928 to 57074202 2274 CpG island CpG island 21807
Tssr85282 9 57072024 to 57072048 24 + TSS region transcription start site region 85282
Sin3a 9 57072040 to 57128366 56326 + protein coding gene transcriptional regulator, SIN3A (yeast)
Tssr85283 9 57072065 to 57072076 11 + TSS region transcription start site region 85283
Tssr85284 9 57073735 to 57073754 19 + TSS region transcription start site region 85284
Tssr85285 9 57073858 to 57073872 14 + TSS region transcription start site region 85285
Cpgi21808 9 57074454 to 57074607 153 CpG island CpG island 21808
2700012I20Rik 9 57075216 to 57076013 797 - lincRNA gene RIKEN cDNA 2700012I20 gene
Tssr2884 9 57075435 to 57075443 8 + TSS region transcription start site region 2884
Cpgi21809 9 57075675 to 57077525 1850 CpG island CpG island 21809
Tssr85286 9 57076343 to 57076387 44 + TSS region transcription start site region 85286
Tssr85287 9 57076395 to 57076411 16 + TSS region transcription start site region 85287
Tssr85288 9 57094463 to 57094474 11 + TSS region transcription start site region 85288
Tssr85289 9 57095362 to 57095379 17 + TSS region transcription start site region 85289
Tssr85290 9 57096746 to 57096772 26 + TSS region transcription start site region 85290
Tssr85291 9 57117709 to 57117713 4 + TSS region transcription start site region 85291
Man2c1os 9 57129982 to 57131290 1308 - antisense lncRNA gene mannosidase, alpha, class 2C, member 1, opposite strand
Cpgi21810 9 57130598 to 57131421 823 CpG island CpG island 21810
Man2c1 9 57130690 to 57142722 12032 + protein coding gene mannosidase, alpha, class 2C, member 1
Tssr85292 9 57130742 to 57130793 51 + TSS region transcription start site region 85292
Tssr89754 9 57131233 to 57131252 19 - TSS region transcription start site region 89754
Tssr85293 9 57133758 to 57133762 4 + TSS region transcription start site region 85293
Neil1 9 57142800 to 57148305 5505 - protein coding gene nei endonuclease VIII-like 1 (E. coli)
Tssr89755 9 57148101 to 57148151 50 - TSS region transcription start site region 89755
Cpgi21811 9 57148127 to 57148514 387 CpG island CpG island 21811
Tssr89756 9 57148217 to 57148240 23 - TSS region transcription start site region 89756
Tssr89757 9 57148295 to 57148325 30 - TSS region transcription start site region 89757
Tssr89758 9 57148338 to 57148374 36 - TSS region transcription start site region 89758
Tssr89759 9 57148379 to 57148405 26 - TSS region transcription start site region 89759
Tssr89760 9 57148437 to 57148450 13 - TSS region transcription start site region 89760
Commd4 9 57155035 to 57158331 3296 - protein coding gene COMM domain containing 4
Cpgi21812 9 57157978 to 57158376 398 CpG island CpG island 21812
Tssr89761 9 57158189 to 57158200 11 - TSS region transcription start site region 89761
Tssr89762 9 57158243 to 57158252 9 - TSS region transcription start site region 89762
Tssr89763 9 57158271 to 57158285 14 - TSS region transcription start site region 89763
Tssr89764 9 57158288 to 57158338 50 - TSS region transcription start site region 89764
Tssr85294 9 57158377 to 57158416 39 + TSS region transcription start site region 85294
Tssr85295 9 57175257 to 57175266 9 + TSS region transcription start site region 85295
Tssr85296 9 57175269 to 57175280 11 + TSS region transcription start site region 85296
1700041C23Rik 9 57175275 to 57186108 10833 + lincRNA gene RIKEN cDNA 1700041C23 gene
Gm46115 9 57202289 to 57203195 906 - lncRNA gene predicted gene, 46115
Tssr89765 9 57203073 to 57203086 13 - TSS region transcription start site region 89765
Trcg1 9 57236556 to 57249864 13308 + protein coding gene taste receptor cell gene 1
1700017B05Rik 9 57253117 to 57262612 9495 - protein coding gene RIKEN cDNA 1700017B05 gene
Cpgi21813 9 57261336 to 57262902 1566 CpG island CpG island 21813
Tssr89766 9 57261494 to 57261524 30 - TSS region transcription start site region 89766
Tssr89767 9 57261576 to 57261585 9 - TSS region transcription start site region 89767
Tssr89768 9 57261709 to 57261710 1 - TSS region transcription start site region 89768
Tssr2885 9 57261874 to 57261893 19 - TSS region transcription start site region 2885
Tssr89769 9 57261977 to 57261981 4 - TSS region transcription start site region 89769
Tssr89770 9 57262563 to 57262580 17 - TSS region transcription start site region 89770
Tssr89771 9 57262591 to 57262609 18 - TSS region transcription start site region 89771
Tssr89772 9 57262761 to 57262797 36 - TSS region transcription start site region 89772
Tssr89773 9 57265789 to 57265790 1 - TSS region transcription start site region 89773
Tssr89774 9 57265807 to 57265818 11 - TSS region transcription start site region 89774
Cpgi21814 9 57281632 to 57281969 337 CpG island CpG island 21814
Tssr89775 9 57295751 to 57295762 11 - TSS region transcription start site region 89775
Tssr85297 9 57296598 to 57296607 9 + TSS region transcription start site region 85297
Tssr89776 9 57299836 to 57299859 23 - TSS region transcription start site region 89776
Gm39343 9 57309567 to 57331617 22050 + lncRNA gene predicted gene, 39343
D9Mit314 9 57314406 to 57314527 121 DNA segment DNA Segment, Chr 9, Massachusetts Institute of Technology-314
Gm18996 9 57328661 to 57329415 754 - pseudogene predicted gene, 18996
Tssr85298 9 57334066 to 57334077 11 + TSS region transcription start site region 85298
Gm5121 9 57334128 to 57334754 626 + pseudogene predicted gene 5121
Ppcdc 9 57385095 to 57440124 55029 - protein coding gene phosphopantothenoylcysteine decarboxylase
4930430J02Rik 9 57391070 to 57400364 9294 + lncRNA gene RIKEN cDNA 4930430J02 gene
Tssr89777 9 57421320 to 57421371 51 - TSS region transcription start site region 89777
Tssr89778 9 57421373 to 57421386 13 - TSS region transcription start site region 89778
Tssr89779 9 57426090 to 57426114 24 - TSS region transcription start site region 89779
Tssr89780 9 57428014 to 57428025 11 - TSS region transcription start site region 89780
Tssr85299 9 57428131 to 57428146 15 + TSS region transcription start site region 85299
Tssr85300 9 57428166 to 57428177 11 + TSS region transcription start site region 85300
Tssr85301 9 57428179 to 57428190 11 + TSS region transcription start site region 85301
Tssr89781 9 57434921 to 57434932 11 - TSS region transcription start site region 89781
Tssr89782 9 57434937 to 57434953 16 - TSS region transcription start site region 89782
Tssr89783 9 57434959 to 57434985 26 - TSS region transcription start site region 89783
Cpgi21815 9 57439866 to 57440195 329 CpG island CpG island 21815
Tssr89784 9 57440084 to 57440129 45 - TSS region transcription start site region 89784
Scamp5 9 57441327 to 57468060 26733 - protein coding gene secretory carrier membrane protein 5
Tssr89785 9 57443092 to 57443108 16 - TSS region transcription start site region 89785
Tssr89786 9 57443116 to 57443126 10 - TSS region transcription start site region 89786
Tssr89787 9 57443333 to 57443364 31 - TSS region transcription start site region 89787
Tssr89788 9 57443559 to 57443570 11 - TSS region transcription start site region 89788
Tssr89789 9 57447706 to 57447738 32 - TSS region transcription start site region 89789
Tssr89790 9 57449166 to 57449202 36 - TSS region transcription start site region 89790
Tssr89791 9 57449326 to 57449340 14 - TSS region transcription start site region 89791
Cpgi21816 9 57467448 to 57468416 968 CpG island CpG island 21816
Tssr89792 9 57467985 to 57468074 89 - TSS region transcription start site region 89792
Tssr89793 9 57468980 to 57469014 34 - TSS region transcription start site region 89793
D9Wsu149 9 57482963 to 57483538 575 + pseudogene DNA segment, Chr 9, Wayne State University 149
Tssr85302 9 57483908 to 57483917 9 + TSS region transcription start site region 85302
Gm6166 9 57483963 to 57484371 408 + pseudogene predicted gene 6166
Gm18103 9 57484615 to 57485302 687 + pseudogene predicted gene, 18103
Cpgi21817 9 57501880 to 57502199 319 CpG island CpG island 21817
Cpgi21818 9 57503457 to 57503699 242 CpG island CpG island 21818
Cpgi21819 9 57503717 to 57504892 1175 CpG island CpG island 21819
Tssr85303 9 57504012 to 57504068 56 + TSS region transcription start site region 85303
Rpp25 9 57504102 to 57505447 1345 + protein coding gene ribonuclease P/MRP 25 subunit
Tssr85304 9 57504531 to 57504562 31 + TSS region transcription start site region 85304
Tssr85305 9 57504566 to 57504596 30 + TSS region transcription start site region 85305
Tssr85306 9 57520529 to 57520560 31 + TSS region transcription start site region 85306
Cpgi21820 9 57520887 to 57521962 1075 CpG island CpG island 21820
Tssr85307 9 57521196 to 57521203 7 + TSS region transcription start site region 85307
Tssr85308 9 57521234 to 57521314 80 + TSS region transcription start site region 85308
Cox5a 9 57521274 to 57532426 11152 + protein coding gene cytochrome c oxidase subunit 5A
Tssr85309 9 57521333 to 57521342 9 + TSS region transcription start site region 85309
Tssr2886 9 57521377 to 57521378 1 + TSS region transcription start site region 2886
Tssr85310 9 57528946 to 57528955 9 + TSS region transcription start site region 85310
Gm26631 9 57531287 to 57537629 6342 - bidirectional promoter lncRNA gene predicted gene, 26631
Cpgi21821 9 57537279 to 57538158 879 CpG island CpG island 21821
Tssr85311 9 57537518 to 57537577 59 + TSS region transcription start site region 85311
Fam219b 9 57537528 to 57543184 5656 + protein coding gene family with sequence similarity 219, member B
Tssr85312 9 57537583 to 57537634 51 + TSS region transcription start site region 85312
Tssr85313 9 57541475 to 57541479 4 + TSS region transcription start site region 85313
Mpi 9 57544256 to 57552763 8507 - protein coding gene mannose phosphate isomerase
Tssr89794 9 57552281 to 57552289 8 - TSS region transcription start site region 89794
Cpgi21822 9 57552395 to 57552864 469 CpG island CpG island 21822
Tssr89795 9 57552722 to 57552757 35 - TSS region transcription start site region 89795
Tssr89796 9 57552760 to 57552771 11 - TSS region transcription start site region 89796
Cpgi21823 9 57553261 to 57553437 176 CpG island CpG island 21823
Cpgi21824 9 57560810 to 57561324 514 CpG island CpG island 21824
Tssr85314 9 57560934 to 57560989 55 + TSS region transcription start site region 85314
Scamp2 9 57560943 to 57588795 27852 + protein coding gene secretory carrier membrane protein 2
Tssr85315 9 57561001 to 57561012 11 + TSS region transcription start site region 85315
Cpgi21825 9 57589086 to 57589853 767 CpG island CpG island 21825
Tssr85316 9 57589442 to 57589482 40 + TSS region transcription start site region 85316
Ulk3 9 57589452 to 57596233 6781 + protein coding gene unc-51-like kinase 3
Tssr85317 9 57589485 to 57589498 13 + TSS region transcription start site region 85317
Tssr85318 9 57589508 to 57589566 58 + TSS region transcription start site region 85318
Cplx3 9 57599992 to 57606281 6289 - protein coding gene complexin 3
Feml2 9 57600000 to 63300000 5700000 QTL femur length in high growth mice 2
Cpgi21826 9 57605973 to 57606395 422 CpG island CpG island 21826
Tssr89797 9 57606194 to 57606205 11 - TSS region transcription start site region 89797
Tssr89798 9 57606234 to 57606260 26 - TSS region transcription start site region 89798
Gm32392 9 57606624 to 57616089 9465 + lncRNA gene predicted gene, 32392
Lman1l 9 57607085 to 57620774 13689 - protein coding gene lectin, mannose-binding 1 like
Tssr89799 9 57620760 to 57620778 18 - TSS region transcription start site region 89799
Csk 9 57626646 to 57653631 26985 - protein coding gene c-src tyrosine kinase
Tssr89800 9 57627027 to 57627072 45 - TSS region transcription start site region 89800
Cpgi21827 9 57640500 to 57640721 221 CpG island CpG island 21827
Tssr89801 9 57644237 to 57644240 3 - TSS region transcription start site region 89801
Cpgi21828 9 57644705 to 57646102 1397 CpG island CpG island 21828
Tssr89802 9 57645125 to 57645136 11 - TSS region transcription start site region 89802
Tssr89803 9 57645154 to 57645180 26 - TSS region transcription start site region 89803
Tssr89804 9 57645188 to 57645207 19 - TSS region transcription start site region 89804
Tssr85319 9 57645261 to 57645279 18 + TSS region transcription start site region 85319
Tssr89805 9 57645432 to 57645443 11 - TSS region transcription start site region 89805
Tssr89806 9 57645532 to 57645541 9 - TSS region transcription start site region 89806
Tssr89807 9 57645561 to 57645672 111 - TSS region transcription start site region 89807
Tssr85320 9 57645793 to 57645797 4 + TSS region transcription start site region 85320
Tssr89808 9 57646710 to 57646729 19 - TSS region transcription start site region 89808
Tssr89809 9 57646746 to 57646769 23 - TSS region transcription start site region 89809
Tssr85321 9 57652719 to 57652742 23 + TSS region transcription start site region 85321
Tssr89810 9 57653431 to 57653455 24 - TSS region transcription start site region 89810
Tssr89811 9 57653464 to 57653479 15 - TSS region transcription start site region 89811
Cyp1a2 9 57676937 to 57683655 6718 - protein coding gene cytochrome P450, family 1, subfamily a, polypeptide 2
Tssr89812 9 57677140 to 57677145 5 - TSS region transcription start site region 89812
Tssr89813 9 57677199 to 57677208 9 - TSS region transcription start site region 89813
D9Mit101.2 9 57680203 to 57680377 174 DNA segment DNA segment, Chr 9, Massachusetts Institute of Technology 101.2
D9Mit101 9 57680247 to 57680587 340 DNA segment DNA Segment, Chr 9, Massachusetts Institute of Technology 101
D9Mit101.1 9 57680594 to 57680732 138 DNA segment DNA segment, Chr 9, Massachusetts Institute of Technology 101.1
Cpgi21829 9 57681587 to 57682028 441 CpG island CpG island 21829
Tssr89814 9 57681798 to 57681809 11 - TSS region transcription start site region 89814
Tssr89815 9 57681904 to 57681914 10 - TSS region transcription start site region 89815
Tssr89816 9 57682022 to 57682032 10 - TSS region transcription start site region 89816
Tssr89817 9 57682206 to 57682216 10 - TSS region transcription start site region 89817
Tssr89818 9 57683644 to 57683663 19 - TSS region transcription start site region 89818
Vmbic5 9 57684209 to 65923895 8239686 QTL ventral midbrain iron content 5
D9Mit21 9 57684209 to 57684399 190 DNA segment DNA segment, Chr 9, Massachusetts Institute of Technology 21
Cyp1a1 9 57687928 to 57703824 15896 + protein coding gene cytochrome P450, family 1, subfamily a, polypeptide 1
Cpgi21830 9 57696206 to 57697192 986 CpG island CpG island 21830
Tssr85322 9 57697612 to 57697616 4 + TSS region transcription start site region 85322
D9Mit28 9 57699693 to 57699838 145 DNA segment DNA segment, Chr 9, Massachusetts Institute of Technology 28
Cpgi21831 9 57708391 to 57709331 940 CpG island CpG island 21831
Tssr85323 9 57708534 to 57708608 74 + TSS region transcription start site region 85323
Edc3 9 57708555 to 57750167 41612 + protein coding gene enhancer of mRNA decapping 3
Tssr2887 9 57708616 to 57708626 10 + TSS region transcription start site region 2887
Tssr85324 9 57708631 to 57708661 30 + TSS region transcription start site region 85324
Clk3 9 57750709 to 57765860 15151 - protein coding gene CDC-like kinase 3
Tssr89819 9 57756288 to 57756292 4 - TSS region transcription start site region 89819
Tssr89820 9 57761922 to 57761925 3 - TSS region transcription start site region 89820
Tssr89821 9 57761938 to 57761956 18 - TSS region transcription start site region 89821
Tssr89822 9 57761968 to 57761980 12 - TSS region transcription start site region 89822
Cpgi21832 9 57764179 to 57766338 2159 CpG island CpG island 21832
Tssr85325 9 57764449 to 57764463 14 + TSS region transcription start site region 85325
Tssr89823 9 57764683 to 57764693 10 - TSS region transcription start site region 89823
Tssr89824 9 57764842 to 57764856 14 - TSS region transcription start site region 89824
Tssr89825 9 57765066 to 57765084 18 - TSS region transcription start site region 89825
Tssr89826 9 57765093 to 57765148 55 - TSS region transcription start site region 89826
Tssr85326 9 57765146 to 57765199 53 + TSS region transcription start site region 85326
Tssr85327 9 57765205 to 57765235 30 + TSS region transcription start site region 85327
Tssr89827 9 57765540 to 57765555 15 - TSS region transcription start site region 89827
Tssr89828 9 57765567 to 57765600 33 - TSS region transcription start site region 89828
Tssr89829 9 57765609 to 57765632 23 - TSS region transcription start site region 89829
Tssr89830 9 57765799 to 57765816 17 - TSS region transcription start site region 89830