Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 9:56934968-57122808

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41 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Cpgi21804 9 56937273 to 56938097 824 CpG island CpG island 21804
Tssr85268 9 56937462 to 56937502 40 + TSS region transcription start site region 85268
Imp3 9 56937500 to 56938398 898 + protein coding gene IMP3, U3 small nucleolar ribonucleoprotein
Tssr85269 9 56937812 to 56937840 28 + TSS region transcription start site region 85269
Cpgi21805 9 56950547 to 56951309 762 CpG island CpG island 21805
Tssr89751 9 56950784 to 56950804 20 - TSS region transcription start site region 89751
Tssr85270 9 56950899 to 56950932 33 + TSS region transcription start site region 85270
Snupn 9 56950924 to 56983206 32282 + protein coding gene snurportin 1
Tssr85271 9 56950964 to 56950973 9 + TSS region transcription start site region 85271
Tssr85272 9 56952747 to 56952751 4 + TSS region transcription start site region 85272
B930032C10Rik 9 56973873 to 56974737 864 unclassified gene RIKEN cDNA B930032C10 gene
Tssr85273 9 56994565 to 56994608 43 + TSS region transcription start site region 85273
Cpgi21806 9 56994626 to 56996116 1490 CpG island CpG island 21806
Tssr85274 9 56994863 to 56994874 11 + TSS region transcription start site region 85274
Tssr85275 9 56994889 to 56994918 29 + TSS region transcription start site region 85275
Tssr85276 9 56994932 to 56994986 54 + TSS region transcription start site region 85276
Ptpn9 9 56994968 to 57062808 67840 + protein coding gene protein tyrosine phosphatase, non-receptor type 9
Tssr85277 9 56995077 to 56995117 40 + TSS region transcription start site region 85277
Tssr85278 9 56995126 to 56995139 13 + TSS region transcription start site region 85278
Tssr85279 9 56995378 to 56995464 86 + TSS region transcription start site region 85279
Tssr85280 9 56995554 to 56995576 22 + TSS region transcription start site region 85280
Tssr85281 9 56997526 to 56997530 4 + TSS region transcription start site region 85281
Gm10658 9 57056897 to 57071966 15069 - antisense lncRNA gene predicted gene 10658
Tssr89752 9 57071850 to 57071862 12 - TSS region transcription start site region 89752
Tssr89753 9 57071879 to 57071905 26 - TSS region transcription start site region 89753
Cpgi21807 9 57071928 to 57074202 2274 CpG island CpG island 21807
Tssr85282 9 57072024 to 57072048 24 + TSS region transcription start site region 85282
Sin3a 9 57072040 to 57128366 56326 + protein coding gene transcriptional regulator, SIN3A (yeast)
Tssr85283 9 57072065 to 57072076 11 + TSS region transcription start site region 85283
Tssr85284 9 57073735 to 57073754 19 + TSS region transcription start site region 85284
Tssr85285 9 57073858 to 57073872 14 + TSS region transcription start site region 85285
Cpgi21808 9 57074454 to 57074607 153 CpG island CpG island 21808
2700012I20Rik 9 57075216 to 57076013 797 - lincRNA gene RIKEN cDNA 2700012I20 gene
Tssr2884 9 57075435 to 57075443 8 + TSS region transcription start site region 2884
Cpgi21809 9 57075675 to 57077525 1850 CpG island CpG island 21809
Tssr85286 9 57076343 to 57076387 44 + TSS region transcription start site region 85286
Tssr85287 9 57076395 to 57076411 16 + TSS region transcription start site region 85287
Tssr85288 9 57094463 to 57094474 11 + TSS region transcription start site region 85288
Tssr85289 9 57095362 to 57095379 17 + TSS region transcription start site region 85289
Tssr85290 9 57096746 to 57096772 26 + TSS region transcription start site region 85290
Tssr85291 9 57117709 to 57117713 4 + TSS region transcription start site region 85291