Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 9:56645353-56947430

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44 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
repro46 9 50753738 to 56901655 6147917 heritable phenotypic marker reproductive mutant 46, JAX Reproductive Mutagenesis Program
Lingo1 9 56618475 to 56796468 177993 - protein coding gene leucine rich repeat and Ig domain containing 1
Gm31642 9 56664906 to 56672183 7277 + lncRNA gene predicted gene, 31642
Cpgi21799 9 56795353 to 56797430 2077 CpG island CpG island 21799
Tssr89733 9 56795766 to 56795824 58 - TSS region transcription start site region 89733
Tssr89734 9 56796220 to 56796243 23 - TSS region transcription start site region 89734
Tssr89735 9 56796270 to 56796319 49 - TSS region transcription start site region 89735
Tssr89736 9 56796872 to 56796955 83 - TSS region transcription start site region 89736
Gm31586 9 56796958 to 56798407 1449 + lncRNA gene predicted gene, 31586
Gm47235 9 56798962 to 56801261 2299 - lincRNA gene predicted gene, 47235
Cpgi21800 9 56825464 to 56825766 302 CpG island CpG island 21800
Odf3l1 9 56848656 to 56860510 11854 - protein coding gene outer dense fiber of sperm tails 3-like 1
Tssr89737 9 56851945 to 56852018 73 - TSS region transcription start site region 89737
Tssr89738 9 56852026 to 56852030 4 - TSS region transcription start site region 89738
Tssr89739 9 56852033 to 56852036 3 - TSS region transcription start site region 89739
Tssr89740 9 56860475 to 56860507 32 - TSS region transcription start site region 89740
Cpgi21801 9 56864974 to 56865280 306 CpG island CpG island 21801
Tssr85263 9 56865018 to 56865047 29 + TSS region transcription start site region 85263
Tssr85264 9 56865051 to 56865072 21 + TSS region transcription start site region 85264
Tssr85265 9 56865079 to 56865090 11 + TSS region transcription start site region 85265
Tssr85266 9 56865095 to 56865098 3 + TSS region transcription start site region 85266
Cspg4 9 56865104 to 56899870 34766 + protein coding gene chondroitin sulfate proteoglycan 4
Tssr85267 9 56865107 to 56865115 8 + TSS region transcription start site region 85267
Tssr89741 9 56883007 to 56883017 10 - TSS region transcription start site region 89741
Cpgi21802 9 56890051 to 56890436 385 CpG island CpG island 21802
D9Mit301 9 56901536 to 56901655 119 DNA segment DNA Segment, Chr 9, Massachusetts Institute of Technology 301
Gm47237 9 56903461 to 56904996 1535 + lincRNA gene predicted gene, 47237
Snx33 9 56917193 to 56928371 11178 - protein coding gene sorting nexin 33
Tssr89742 9 56925783 to 56925797 14 - TSS region transcription start site region 89742
Tssr89743 9 56925924 to 56925930 6 - TSS region transcription start site region 89743
Tssr89744 9 56926854 to 56926858 4 - TSS region transcription start site region 89744
Tssr89745 9 56927479 to 56927492 13 - TSS region transcription start site region 89745
Cpgi21803 9 56927488 to 56928693 1205 CpG island CpG island 21803
Tssr89746 9 56927972 to 56927995 23 - TSS region transcription start site region 89746
Tssr89747 9 56928056 to 56928122 66 - TSS region transcription start site region 89747
Tssr89748 9 56928139 to 56928161 22 - TSS region transcription start site region 89748
Tssr89749 9 56928295 to 56928314 19 - TSS region transcription start site region 89749
Tssr89750 9 56928350 to 56928392 42 - TSS region transcription start site region 89750
4930442G15Rik 9 56931631 to 56933545 1914 + lincRNA gene RIKEN cDNA 4930442G15 gene
Gm19936 9 56932431 to 56933268 837 - pseudogene predicted gene, 19936
Cpgi21804 9 56937273 to 56938097 824 CpG island CpG island 21804
Tssr85268 9 56937462 to 56937502 40 + TSS region transcription start site region 85268
Imp3 9 56937500 to 56938398 898 + protein coding gene IMP3, U3 small nucleolar ribonucleoprotein
Tssr85269 9 56937812 to 56937840 28 + TSS region transcription start site region 85269