Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 9:56474357-60463615

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736 genes found. Result truncated to 200 rows.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Fecq4 9 47631726 to 57897921 10266195 QTL fecundity QTL 4
repro46 9 50753738 to 56901655 6147917 heritable phenotypic marker reproductive mutant 46, JAX Reproductive Mutagenesis Program
Hmg20a 9 56418628 to 56496936 78308 + protein coding gene high mobility group 20A
Tssr85262 9 56477249 to 56477267 18 + TSS region transcription start site region 85262
Spcq2 9 56492601 to 56492601 0 QTL sperm count QTL 2
Gm47175 9 56504825 to 56506661 1836 - unclassified gene predicted gene, 47175
Tssr89712 9 56506597 to 56506604 7 - TSS region transcription start site region 89712
Gm47176 9 56539905 to 56540232 327 + lincRNA gene predicted gene, 47176
Gm47178 9 56543756 to 56544097 341 + pseudogene predicted gene, 47178
Tssr89713 9 56549131 to 56549139 8 - TSS region transcription start site region 89713
Gm31529 9 56573507 to 56580207 6700 - lncRNA gene predicted gene, 31529
Gm26868 9 56606693 to 56614473 7780 + lincRNA gene predicted gene, 26868
Lingo1 9 56618475 to 56796468 177993 - protein coding gene leucine rich repeat and Ig domain containing 1
Cpgi21796 9 56619516 to 56621332 1816 CpG island CpG island 21796
Tssr89714 9 56620332 to 56620344 12 - TSS region transcription start site region 89714
Tssr89715 9 56620603 to 56620612 9 - TSS region transcription start site region 89715
Tssr89716 9 56620618 to 56620633 15 - TSS region transcription start site region 89716
Tssr89717 9 56620686 to 56620697 11 - TSS region transcription start site region 89717
Tssr89718 9 56621218 to 56621229 11 - TSS region transcription start site region 89718
Tssr89719 9 56621329 to 56621338 9 - TSS region transcription start site region 89719
Cpgi21797 9 56634787 to 56636498 1711 CpG island CpG island 21797
Tssr89720 9 56635098 to 56635135 37 - TSS region transcription start site region 89720
Tssr89721 9 56635605 to 56635620 15 - TSS region transcription start site region 89721
Tssr89722 9 56635624 to 56635691 67 - TSS region transcription start site region 89722
Tssr89723 9 56635697 to 56635717 20 - TSS region transcription start site region 89723
Tssr89724 9 56635860 to 56635880 20 - TSS region transcription start site region 89724
Tssr89725 9 56635884 to 56635897 13 - TSS region transcription start site region 89725
Tssr89726 9 56635962 to 56635977 15 - TSS region transcription start site region 89726
Tssr89727 9 56635992 to 56635998 6 - TSS region transcription start site region 89727
Tssr89728 9 56636002 to 56636007 5 - TSS region transcription start site region 89728
Tssr89729 9 56636019 to 56636026 7 - TSS region transcription start site region 89729
Tssr89730 9 56636031 to 56636036 5 - TSS region transcription start site region 89730
Tssr89731 9 56636364 to 56636377 13 - TSS region transcription start site region 89731
Tssr89732 9 56637342 to 56637359 17 - TSS region transcription start site region 89732
Cpgi21798 9 56637478 to 56637963 485 CpG island CpG island 21798
Gm31642 9 56664906 to 56672183 7277 + lncRNA gene predicted gene, 31642
Cpgi21799 9 56795353 to 56797430 2077 CpG island CpG island 21799
Tssr89733 9 56795766 to 56795824 58 - TSS region transcription start site region 89733
Tssr89734 9 56796220 to 56796243 23 - TSS region transcription start site region 89734
Tssr89735 9 56796270 to 56796319 49 - TSS region transcription start site region 89735
Tssr89736 9 56796872 to 56796955 83 - TSS region transcription start site region 89736
Gm31586 9 56796958 to 56798407 1449 + lncRNA gene predicted gene, 31586
Gm47235 9 56798962 to 56801261 2299 - lincRNA gene predicted gene, 47235
Cpgi21800 9 56825464 to 56825766 302 CpG island CpG island 21800
Odf3l1 9 56848656 to 56860510 11854 - protein coding gene outer dense fiber of sperm tails 3-like 1
Tssr89737 9 56851945 to 56852018 73 - TSS region transcription start site region 89737
Tssr89738 9 56852026 to 56852030 4 - TSS region transcription start site region 89738
Tssr89739 9 56852033 to 56852036 3 - TSS region transcription start site region 89739
Tssr89740 9 56860475 to 56860507 32 - TSS region transcription start site region 89740
Cpgi21801 9 56864974 to 56865280 306 CpG island CpG island 21801
Tssr85263 9 56865018 to 56865047 29 + TSS region transcription start site region 85263
Tssr85264 9 56865051 to 56865072 21 + TSS region transcription start site region 85264
Tssr85265 9 56865079 to 56865090 11 + TSS region transcription start site region 85265
Tssr85266 9 56865095 to 56865098 3 + TSS region transcription start site region 85266
Cspg4 9 56865104 to 56899870 34766 + protein coding gene chondroitin sulfate proteoglycan 4
Tssr85267 9 56865107 to 56865115 8 + TSS region transcription start site region 85267
Tssr89741 9 56883007 to 56883017 10 - TSS region transcription start site region 89741
Cpgi21802 9 56890051 to 56890436 385 CpG island CpG island 21802
D9Mit301 9 56901536 to 56901655 119 DNA segment DNA Segment, Chr 9, Massachusetts Institute of Technology 301
Gm47237 9 56903461 to 56904996 1535 + lincRNA gene predicted gene, 47237
Snx33 9 56917193 to 56928371 11178 - protein coding gene sorting nexin 33
Tssr89742 9 56925783 to 56925797 14 - TSS region transcription start site region 89742
Tssr89743 9 56925924 to 56925930 6 - TSS region transcription start site region 89743
Tssr89744 9 56926854 to 56926858 4 - TSS region transcription start site region 89744
Tssr89745 9 56927479 to 56927492 13 - TSS region transcription start site region 89745
Cpgi21803 9 56927488 to 56928693 1205 CpG island CpG island 21803
Tssr89746 9 56927972 to 56927995 23 - TSS region transcription start site region 89746
Tssr89747 9 56928056 to 56928122 66 - TSS region transcription start site region 89747
Tssr89748 9 56928139 to 56928161 22 - TSS region transcription start site region 89748
Tssr89749 9 56928295 to 56928314 19 - TSS region transcription start site region 89749
Tssr89750 9 56928350 to 56928392 42 - TSS region transcription start site region 89750
4930442G15Rik 9 56931631 to 56933545 1914 + lincRNA gene RIKEN cDNA 4930442G15 gene
Gm19936 9 56932431 to 56933268 837 - pseudogene predicted gene, 19936
Cpgi21804 9 56937273 to 56938097 824 CpG island CpG island 21804
Tssr85268 9 56937462 to 56937502 40 + TSS region transcription start site region 85268
Imp3 9 56937500 to 56938398 898 + protein coding gene IMP3, U3 small nucleolar ribonucleoprotein
Tssr85269 9 56937812 to 56937840 28 + TSS region transcription start site region 85269
Cpgi21805 9 56950547 to 56951309 762 CpG island CpG island 21805
Tssr89751 9 56950784 to 56950804 20 - TSS region transcription start site region 89751
Tssr85270 9 56950899 to 56950932 33 + TSS region transcription start site region 85270
Snupn 9 56950924 to 56983206 32282 + protein coding gene snurportin 1
Tssr85271 9 56950964 to 56950973 9 + TSS region transcription start site region 85271
Tssr85272 9 56952747 to 56952751 4 + TSS region transcription start site region 85272
B930032C10Rik 9 56973873 to 56974737 864 unclassified gene RIKEN cDNA B930032C10 gene
Tssr85273 9 56994565 to 56994608 43 + TSS region transcription start site region 85273
Cpgi21806 9 56994626 to 56996116 1490 CpG island CpG island 21806
Tssr85274 9 56994863 to 56994874 11 + TSS region transcription start site region 85274
Tssr85275 9 56994889 to 56994918 29 + TSS region transcription start site region 85275
Tssr85276 9 56994932 to 56994986 54 + TSS region transcription start site region 85276
Ptpn9 9 56994968 to 57062808 67840 + protein coding gene protein tyrosine phosphatase, non-receptor type 9
Tssr85277 9 56995077 to 56995117 40 + TSS region transcription start site region 85277
Tssr85278 9 56995126 to 56995139 13 + TSS region transcription start site region 85278
Tssr85279 9 56995378 to 56995464 86 + TSS region transcription start site region 85279
Tssr85280 9 56995554 to 56995576 22 + TSS region transcription start site region 85280
Tssr85281 9 56997526 to 56997530 4 + TSS region transcription start site region 85281
Gm10658 9 57056897 to 57071966 15069 - antisense lncRNA gene predicted gene 10658
Tssr89752 9 57071850 to 57071862 12 - TSS region transcription start site region 89752
Tssr89753 9 57071879 to 57071905 26 - TSS region transcription start site region 89753
Cpgi21807 9 57071928 to 57074202 2274 CpG island CpG island 21807
Tssr85282 9 57072024 to 57072048 24 + TSS region transcription start site region 85282
Sin3a 9 57072040 to 57128366 56326 + protein coding gene transcriptional regulator, SIN3A (yeast)
Tssr85283 9 57072065 to 57072076 11 + TSS region transcription start site region 85283
Tssr85284 9 57073735 to 57073754 19 + TSS region transcription start site region 85284
Tssr85285 9 57073858 to 57073872 14 + TSS region transcription start site region 85285
Cpgi21808 9 57074454 to 57074607 153 CpG island CpG island 21808
2700012I20Rik 9 57075216 to 57076013 797 - lincRNA gene RIKEN cDNA 2700012I20 gene
Tssr2884 9 57075435 to 57075443 8 + TSS region transcription start site region 2884
Cpgi21809 9 57075675 to 57077525 1850 CpG island CpG island 21809
Tssr85286 9 57076343 to 57076387 44 + TSS region transcription start site region 85286
Tssr85287 9 57076395 to 57076411 16 + TSS region transcription start site region 85287
Tssr85288 9 57094463 to 57094474 11 + TSS region transcription start site region 85288
Tssr85289 9 57095362 to 57095379 17 + TSS region transcription start site region 85289
Tssr85290 9 57096746 to 57096772 26 + TSS region transcription start site region 85290
Tssr85291 9 57117709 to 57117713 4 + TSS region transcription start site region 85291
Man2c1os 9 57129982 to 57131290 1308 - antisense lncRNA gene mannosidase, alpha, class 2C, member 1, opposite strand
Cpgi21810 9 57130598 to 57131421 823 CpG island CpG island 21810
Man2c1 9 57130690 to 57142722 12032 + protein coding gene mannosidase, alpha, class 2C, member 1
Tssr85292 9 57130742 to 57130793 51 + TSS region transcription start site region 85292
Tssr89754 9 57131233 to 57131252 19 - TSS region transcription start site region 89754
Tssr85293 9 57133758 to 57133762 4 + TSS region transcription start site region 85293
Neil1 9 57142800 to 57148305 5505 - protein coding gene nei endonuclease VIII-like 1 (E. coli)
Tssr89755 9 57148101 to 57148151 50 - TSS region transcription start site region 89755
Cpgi21811 9 57148127 to 57148514 387 CpG island CpG island 21811
Tssr89756 9 57148217 to 57148240 23 - TSS region transcription start site region 89756
Tssr89757 9 57148295 to 57148325 30 - TSS region transcription start site region 89757
Tssr89758 9 57148338 to 57148374 36 - TSS region transcription start site region 89758
Tssr89759 9 57148379 to 57148405 26 - TSS region transcription start site region 89759
Tssr89760 9 57148437 to 57148450 13 - TSS region transcription start site region 89760
Commd4 9 57155035 to 57158331 3296 - protein coding gene COMM domain containing 4
Cpgi21812 9 57157978 to 57158376 398 CpG island CpG island 21812
Tssr89761 9 57158189 to 57158200 11 - TSS region transcription start site region 89761
Tssr89762 9 57158243 to 57158252 9 - TSS region transcription start site region 89762
Tssr89763 9 57158271 to 57158285 14 - TSS region transcription start site region 89763
Tssr89764 9 57158288 to 57158338 50 - TSS region transcription start site region 89764
Tssr85294 9 57158377 to 57158416 39 + TSS region transcription start site region 85294
Tssr85295 9 57175257 to 57175266 9 + TSS region transcription start site region 85295
Tssr85296 9 57175269 to 57175280 11 + TSS region transcription start site region 85296
1700041C23Rik 9 57175275 to 57186108 10833 + lincRNA gene RIKEN cDNA 1700041C23 gene
Gm46115 9 57202289 to 57203195 906 - lncRNA gene predicted gene, 46115
Tssr89765 9 57203073 to 57203086 13 - TSS region transcription start site region 89765
Trcg1 9 57236556 to 57249864 13308 + protein coding gene taste receptor cell gene 1
1700017B05Rik 9 57253117 to 57262612 9495 - protein coding gene RIKEN cDNA 1700017B05 gene
Cpgi21813 9 57261336 to 57262902 1566 CpG island CpG island 21813
Tssr89766 9 57261494 to 57261524 30 - TSS region transcription start site region 89766
Tssr89767 9 57261576 to 57261585 9 - TSS region transcription start site region 89767
Tssr89768 9 57261709 to 57261710 1 - TSS region transcription start site region 89768
Tssr2885 9 57261874 to 57261893 19 - TSS region transcription start site region 2885
Tssr89769 9 57261977 to 57261981 4 - TSS region transcription start site region 89769
Tssr89770 9 57262563 to 57262580 17 - TSS region transcription start site region 89770
Tssr89771 9 57262591 to 57262609 18 - TSS region transcription start site region 89771
Tssr89772 9 57262761 to 57262797 36 - TSS region transcription start site region 89772
Tssr89773 9 57265789 to 57265790 1 - TSS region transcription start site region 89773
Tssr89774 9 57265807 to 57265818 11 - TSS region transcription start site region 89774
Cpgi21814 9 57281632 to 57281969 337 CpG island CpG island 21814
Tssr89775 9 57295751 to 57295762 11 - TSS region transcription start site region 89775
Tssr85297 9 57296598 to 57296607 9 + TSS region transcription start site region 85297
Tssr89776 9 57299836 to 57299859 23 - TSS region transcription start site region 89776
Gm39343 9 57309567 to 57331617 22050 + lncRNA gene predicted gene, 39343
D9Mit314 9 57314406 to 57314527 121 DNA segment DNA Segment, Chr 9, Massachusetts Institute of Technology-314
Gm18996 9 57328661 to 57329415 754 - pseudogene predicted gene, 18996
Tssr85298 9 57334066 to 57334077 11 + TSS region transcription start site region 85298
Gm5121 9 57334128 to 57334754 626 + pseudogene predicted gene 5121
Ppcdc 9 57385095 to 57440124 55029 - protein coding gene phosphopantothenoylcysteine decarboxylase
4930430J02Rik 9 57391070 to 57400364 9294 + lncRNA gene RIKEN cDNA 4930430J02 gene
Tssr89777 9 57421320 to 57421371 51 - TSS region transcription start site region 89777
Tssr89778 9 57421373 to 57421386 13 - TSS region transcription start site region 89778
Tssr89779 9 57426090 to 57426114 24 - TSS region transcription start site region 89779
Tssr89780 9 57428014 to 57428025 11 - TSS region transcription start site region 89780
Tssr85299 9 57428131 to 57428146 15 + TSS region transcription start site region 85299
Tssr85300 9 57428166 to 57428177 11 + TSS region transcription start site region 85300
Tssr85301 9 57428179 to 57428190 11 + TSS region transcription start site region 85301
Tssr89781 9 57434921 to 57434932 11 - TSS region transcription start site region 89781
Tssr89782 9 57434937 to 57434953 16 - TSS region transcription start site region 89782
Tssr89783 9 57434959 to 57434985 26 - TSS region transcription start site region 89783
Cpgi21815 9 57439866 to 57440195 329 CpG island CpG island 21815
Tssr89784 9 57440084 to 57440129 45 - TSS region transcription start site region 89784
Scamp5 9 57441327 to 57468060 26733 - protein coding gene secretory carrier membrane protein 5
Tssr89785 9 57443092 to 57443108 16 - TSS region transcription start site region 89785
Tssr89786 9 57443116 to 57443126 10 - TSS region transcription start site region 89786
Tssr89787 9 57443333 to 57443364 31 - TSS region transcription start site region 89787
Tssr89788 9 57443559 to 57443570 11 - TSS region transcription start site region 89788
Tssr89789 9 57447706 to 57447738 32 - TSS region transcription start site region 89789
Tssr89790 9 57449166 to 57449202 36 - TSS region transcription start site region 89790
Tssr89791 9 57449326 to 57449340 14 - TSS region transcription start site region 89791
Cpgi21816 9 57467448 to 57468416 968 CpG island CpG island 21816
Tssr89792 9 57467985 to 57468074 89 - TSS region transcription start site region 89792
Tssr89793 9 57468980 to 57469014 34 - TSS region transcription start site region 89793
D9Wsu149 9 57482963 to 57483538 575 + pseudogene DNA segment, Chr 9, Wayne State University 149
Tssr85302 9 57483908 to 57483917 9 + TSS region transcription start site region 85302
Gm6166 9 57483963 to 57484371 408 + pseudogene predicted gene 6166
Gm18103 9 57484615 to 57485302 687 + pseudogene predicted gene, 18103
Cpgi21817 9 57501880 to 57502199 319 CpG island CpG island 21817
Cpgi21818 9 57503457 to 57503699 242 CpG island CpG island 21818
Cpgi21819 9 57503717 to 57504892 1175 CpG island CpG island 21819
Tssr85303 9 57504012 to 57504068 56 + TSS region transcription start site region 85303
Rpp25 9 57504102 to 57505447 1345 + protein coding gene ribonuclease P/MRP 25 subunit
Tssr85304 9 57504531 to 57504562 31 + TSS region transcription start site region 85304
Tssr85305 9 57504566 to 57504596 30 + TSS region transcription start site region 85305
Tssr85306 9 57520529 to 57520560 31 + TSS region transcription start site region 85306
Cpgi21820 9 57520887 to 57521962 1075 CpG island CpG island 21820