Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 9:56449906-56887183

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55 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Hmg20a 9 56418628 to 56496936 78308 + protein coding gene high mobility group 20A
Tssr85262 9 56477249 to 56477267 18 + TSS region transcription start site region 85262
Spcq2 9 56492601 to 56492601 0 QTL sperm count QTL 2
Gm47175 9 56504825 to 56506661 1836 - unclassified gene predicted gene, 47175
Tssr89712 9 56506597 to 56506604 7 - TSS region transcription start site region 89712
Gm47176 9 56539905 to 56540232 327 + lincRNA gene predicted gene, 47176
Gm47178 9 56543756 to 56544097 341 + pseudogene predicted gene, 47178
Tssr89713 9 56549131 to 56549139 8 - TSS region transcription start site region 89713
Gm31529 9 56573507 to 56580207 6700 - lncRNA gene predicted gene, 31529
Gm26868 9 56606693 to 56614473 7780 + lincRNA gene predicted gene, 26868
Lingo1 9 56618475 to 56796468 177993 - protein coding gene leucine rich repeat and Ig domain containing 1
Cpgi21796 9 56619516 to 56621332 1816 CpG island CpG island 21796
Tssr89714 9 56620332 to 56620344 12 - TSS region transcription start site region 89714
Tssr89715 9 56620603 to 56620612 9 - TSS region transcription start site region 89715
Tssr89716 9 56620618 to 56620633 15 - TSS region transcription start site region 89716
Tssr89717 9 56620686 to 56620697 11 - TSS region transcription start site region 89717
Tssr89718 9 56621218 to 56621229 11 - TSS region transcription start site region 89718
Tssr89719 9 56621329 to 56621338 9 - TSS region transcription start site region 89719
Cpgi21797 9 56634787 to 56636498 1711 CpG island CpG island 21797
Tssr89720 9 56635098 to 56635135 37 - TSS region transcription start site region 89720
Tssr89721 9 56635605 to 56635620 15 - TSS region transcription start site region 89721
Tssr89722 9 56635624 to 56635691 67 - TSS region transcription start site region 89722
Tssr89723 9 56635697 to 56635717 20 - TSS region transcription start site region 89723
Tssr89724 9 56635860 to 56635880 20 - TSS region transcription start site region 89724
Tssr89725 9 56635884 to 56635897 13 - TSS region transcription start site region 89725
Tssr89726 9 56635962 to 56635977 15 - TSS region transcription start site region 89726
Tssr89727 9 56635992 to 56635998 6 - TSS region transcription start site region 89727
Tssr89728 9 56636002 to 56636007 5 - TSS region transcription start site region 89728
Tssr89729 9 56636019 to 56636026 7 - TSS region transcription start site region 89729
Tssr89730 9 56636031 to 56636036 5 - TSS region transcription start site region 89730
Tssr89731 9 56636364 to 56636377 13 - TSS region transcription start site region 89731
Tssr89732 9 56637342 to 56637359 17 - TSS region transcription start site region 89732
Cpgi21798 9 56637478 to 56637963 485 CpG island CpG island 21798
Gm31642 9 56664906 to 56672183 7277 + lncRNA gene predicted gene, 31642
Cpgi21799 9 56795353 to 56797430 2077 CpG island CpG island 21799
Tssr89733 9 56795766 to 56795824 58 - TSS region transcription start site region 89733
Tssr89734 9 56796220 to 56796243 23 - TSS region transcription start site region 89734
Tssr89735 9 56796270 to 56796319 49 - TSS region transcription start site region 89735
Tssr89736 9 56796872 to 56796955 83 - TSS region transcription start site region 89736
Gm31586 9 56796958 to 56798407 1449 + lncRNA gene predicted gene, 31586
Gm47235 9 56798962 to 56801261 2299 - lincRNA gene predicted gene, 47235
Cpgi21800 9 56825464 to 56825766 302 CpG island CpG island 21800
Odf3l1 9 56848656 to 56860510 11854 - protein coding gene outer dense fiber of sperm tails 3-like 1
Tssr89737 9 56851945 to 56852018 73 - TSS region transcription start site region 89737
Tssr89738 9 56852026 to 56852030 4 - TSS region transcription start site region 89738
Tssr89739 9 56852033 to 56852036 3 - TSS region transcription start site region 89739
Tssr89740 9 56860475 to 56860507 32 - TSS region transcription start site region 89740
Cpgi21801 9 56864974 to 56865280 306 CpG island CpG island 21801
Tssr85263 9 56865018 to 56865047 29 + TSS region transcription start site region 85263
Tssr85264 9 56865051 to 56865072 21 + TSS region transcription start site region 85264
Tssr85265 9 56865079 to 56865090 11 + TSS region transcription start site region 85265
Tssr85266 9 56865095 to 56865098 3 + TSS region transcription start site region 85266
Cspg4 9 56865104 to 56899870 34766 + protein coding gene chondroitin sulfate proteoglycan 4
Tssr85267 9 56865107 to 56865115 8 + TSS region transcription start site region 85267
Tssr89741 9 56883007 to 56883017 10 - TSS region transcription start site region 89741