Gene symbol | Chromo- some |
Coordinates (bp, mm10) | Size (bp) | Strand | Feature Type | Gene name |
---|---|---|---|---|---|---|
Fecq4 | 9 | 10266195 | QTL | fecundity QTL 4 | ||
repro36 | 9 | 10294689 | heritable phenotypic marker | reproductive mutant 36, JAX Reproductive Mutagenesis Program | ||
repro46 | 9 | 6147917 | heritable phenotypic marker | reproductive mutant 46, JAX Reproductive Mutagenesis Program | ||
Cpgi21795 | 9 | 1494 | CpG island | CpG island 21795 | ||
Hmg20a | 9 | 78308 | + | protein coding gene | high mobility group 20A | |
Tssr85256 | 9 | 42 | + | TSS region | transcription start site region 85256 | |
Tssr89710 | 9 | 11 | - | TSS region | transcription start site region 89710 | |
Tssr85257 | 9 | 7 | + | TSS region | transcription start site region 85257 | |
Tssr89711 | 9 | 35 | - | TSS region | transcription start site region 89711 | |
Tssr85258 | 9 | 4 | + | TSS region | transcription start site region 85258 | |
Tssr85259 | 9 | 3 | + | TSS region | transcription start site region 85259 | |
Tssr85260 | 9 | 9 | + | TSS region | transcription start site region 85260 | |
Gm2296 | 9 | 987 | + | pseudogene | predicted gene 2296 | |
Tssr85261 | 9 | 24 | + | TSS region | transcription start site region 85261 | |
5830432F11Rik | 9 | 1051 | unclassified gene | RIKEN cDNA 5830432F11 gene | ||
Tssr85262 | 9 | 18 | + | TSS region | transcription start site region 85262 | |
Spcq2 | 9 | 0 | QTL | sperm count QTL 2 | ||
Gm47175 | 9 | 1836 | - | unclassified gene | predicted gene, 47175 | |
Tssr89712 | 9 | 7 | - | TSS region | transcription start site region 89712 | |
Gm47176 | 9 | 327 | + | lincRNA gene | predicted gene, 47176 | |
Gm47178 | 9 | 341 | + | pseudogene | predicted gene, 47178 | |
Tssr89713 | 9 | 8 | - | TSS region | transcription start site region 89713 | |
Gm31529 | 9 | 6700 | - | lncRNA gene | predicted gene, 31529 | |
Gm26868 | 9 | 7780 | + | lincRNA gene | predicted gene, 26868 | |
Lingo1 | 9 | 177993 | - | protein coding gene | leucine rich repeat and Ig domain containing 1 | |
Cpgi21796 | 9 | 1816 | CpG island | CpG island 21796 | ||
Tssr89714 | 9 | 12 | - | TSS region | transcription start site region 89714 | |
Tssr89715 | 9 | 9 | - | TSS region | transcription start site region 89715 | |
Tssr89716 | 9 | 15 | - | TSS region | transcription start site region 89716 | |
Tssr89717 | 9 | 11 | - | TSS region | transcription start site region 89717 | |
Tssr89718 | 9 | 11 | - | TSS region | transcription start site region 89718 | |
Tssr89719 | 9 | 9 | - | TSS region | transcription start site region 89719 | |
Cpgi21797 | 9 | 1711 | CpG island | CpG island 21797 | ||
Tssr89720 | 9 | 37 | - | TSS region | transcription start site region 89720 | |
Tssr89721 | 9 | 15 | - | TSS region | transcription start site region 89721 | |
Tssr89722 | 9 | 67 | - | TSS region | transcription start site region 89722 | |
Tssr89723 | 9 | 20 | - | TSS region | transcription start site region 89723 | |
Tssr89724 | 9 | 20 | - | TSS region | transcription start site region 89724 | |
Tssr89725 | 9 | 13 | - | TSS region | transcription start site region 89725 | |
Tssr89726 | 9 | 15 | - | TSS region | transcription start site region 89726 | |
Tssr89727 | 9 | 6 | - | TSS region | transcription start site region 89727 | |
Tssr89728 | 9 | 5 | - | TSS region | transcription start site region 89728 | |
Tssr89729 | 9 | 7 | - | TSS region | transcription start site region 89729 | |
Tssr89730 | 9 | 5 | - | TSS region | transcription start site region 89730 | |
Tssr89731 | 9 | 13 | - | TSS region | transcription start site region 89731 | |
Tssr89732 | 9 | 17 | - | TSS region | transcription start site region 89732 | |
Cpgi21798 | 9 | 485 | CpG island | CpG island 21798 | ||
Gm31642 | 9 | 7277 | + | lncRNA gene | predicted gene, 31642 | |
Cpgi21799 | 9 | 2077 | CpG island | CpG island 21799 | ||
Tssr89733 | 9 | 58 | - | TSS region | transcription start site region 89733 | |
Tssr89734 | 9 | 23 | - | TSS region | transcription start site region 89734 | |
Tssr89735 | 9 | 49 | - | TSS region | transcription start site region 89735 | |
Tssr89736 | 9 | 83 | - | TSS region | transcription start site region 89736 | |
Gm31586 | 9 | 1449 | + | lncRNA gene | predicted gene, 31586 | |
Gm47235 | 9 | 2299 | - | lincRNA gene | predicted gene, 47235 | |
Cpgi21800 | 9 | 302 | CpG island | CpG island 21800 | ||
Odf3l1 | 9 | 11854 | - | protein coding gene | outer dense fiber of sperm tails 3-like 1 | |
Tssr89737 | 9 | 73 | - | TSS region | transcription start site region 89737 | |
Tssr89738 | 9 | 4 | - | TSS region | transcription start site region 89738 | |
Tssr89739 | 9 | 3 | - | TSS region | transcription start site region 89739 | |
Tssr89740 | 9 | 32 | - | TSS region | transcription start site region 89740 | |
Cpgi21801 | 9 | 306 | CpG island | CpG island 21801 | ||
Tssr85263 | 9 | 29 | + | TSS region | transcription start site region 85263 | |
Tssr85264 | 9 | 21 | + | TSS region | transcription start site region 85264 | |
Tssr85265 | 9 | 11 | + | TSS region | transcription start site region 85265 | |
Tssr85266 | 9 | 3 | + | TSS region | transcription start site region 85266 | |
Cspg4 | 9 | 34766 | + | protein coding gene | chondroitin sulfate proteoglycan 4 | |
Tssr85267 | 9 | 8 | + | TSS region | transcription start site region 85267 | |
Tssr89741 | 9 | 10 | - | TSS region | transcription start site region 89741 | |
Cpgi21802 | 9 | 385 | CpG island | CpG island 21802 | ||
D9Mit301 | 9 | 119 | DNA segment | DNA Segment, Chr 9, Massachusetts Institute of Technology 301 | ||
Gm47237 | 9 | 1535 | + | lincRNA gene | predicted gene, 47237 | |
Snx33 | 9 | 11178 | - | protein coding gene | sorting nexin 33 | |
Tssr89742 | 9 | 14 | - | TSS region | transcription start site region 89742 | |
Tssr89743 | 9 | 6 | - | TSS region | transcription start site region 89743 | |
Tssr89744 | 9 | 4 | - | TSS region | transcription start site region 89744 | |
Tssr89745 | 9 | 13 | - | TSS region | transcription start site region 89745 | |
Cpgi21803 | 9 | 1205 | CpG island | CpG island 21803 | ||
Tssr89746 | 9 | 23 | - | TSS region | transcription start site region 89746 | |
Tssr89747 | 9 | 66 | - | TSS region | transcription start site region 89747 | |
Tssr89748 | 9 | 22 | - | TSS region | transcription start site region 89748 | |
Tssr89749 | 9 | 19 | - | TSS region | transcription start site region 89749 | |
Tssr89750 | 9 | 42 | - | TSS region | transcription start site region 89750 | |
4930442G15Rik | 9 | 1914 | + | lincRNA gene | RIKEN cDNA 4930442G15 gene | |
Gm19936 | 9 | 837 | - | pseudogene | predicted gene, 19936 | |
Cpgi21804 | 9 | 824 | CpG island | CpG island 21804 | ||
Tssr85268 | 9 | 40 | + | TSS region | transcription start site region 85268 | |
Imp3 | 9 | 898 | + | protein coding gene | IMP3, U3 small nucleolar ribonucleoprotein | |
Tssr85269 | 9 | 28 | + | TSS region | transcription start site region 85269 | |
Cpgi21805 | 9 | 762 | CpG island | CpG island 21805 | ||
Tssr89751 | 9 | 20 | - | TSS region | transcription start site region 89751 | |
Tssr85270 | 9 | 33 | + | TSS region | transcription start site region 85270 | |
Snupn | 9 | 32282 | + | protein coding gene | snurportin 1 | |
Tssr85271 | 9 | 9 | + | TSS region | transcription start site region 85271 | |
Tssr85272 | 9 | 4 | + | TSS region | transcription start site region 85272 | |
B930032C10Rik | 9 | 864 | unclassified gene | RIKEN cDNA B930032C10 gene | ||
Tssr85273 | 9 | 43 | + | TSS region | transcription start site region 85273 | |
Cpgi21806 | 9 | 1490 | CpG island | CpG island 21806 | ||
Tssr85274 | 9 | 11 | + | TSS region | transcription start site region 85274 | |
Tssr85275 | 9 | 29 | + | TSS region | transcription start site region 85275 | |
Tssr85276 | 9 | 54 | + | TSS region | transcription start site region 85276 | |
Ptpn9 | 9 | 67840 | + | protein coding gene | protein tyrosine phosphatase, non-receptor type 9 | |
Tssr85277 | 9 | 40 | + | TSS region | transcription start site region 85277 | |
Tssr85278 | 9 | 13 | + | TSS region | transcription start site region 85278 | |
Tssr85279 | 9 | 86 | + | TSS region | transcription start site region 85279 | |
Tssr85280 | 9 | 22 | + | TSS region | transcription start site region 85280 | |
Tssr85281 | 9 | 4 | + | TSS region | transcription start site region 85281 | |
Gm10658 | 9 | 15069 | - | antisense lncRNA gene | predicted gene 10658 | |
Tssr89752 | 9 | 12 | - | TSS region | transcription start site region 89752 | |
Tssr89753 | 9 | 26 | - | TSS region | transcription start site region 89753 | |
Cpgi21807 | 9 | 2274 | CpG island | CpG island 21807 | ||
Tssr85282 | 9 | 24 | + | TSS region | transcription start site region 85282 | |
Sin3a | 9 | 56326 | + | protein coding gene | transcriptional regulator, SIN3A (yeast) | |
Tssr85283 | 9 | 11 | + | TSS region | transcription start site region 85283 | |
Tssr85284 | 9 | 19 | + | TSS region | transcription start site region 85284 | |
Tssr85285 | 9 | 14 | + | TSS region | transcription start site region 85285 | |
Cpgi21808 | 9 | 153 | CpG island | CpG island 21808 | ||
2700012I20Rik | 9 | 797 | - | lincRNA gene | RIKEN cDNA 2700012I20 gene | |
Tssr2884 | 9 | 8 | + | TSS region | transcription start site region 2884 | |
Cpgi21809 | 9 | 1850 | CpG island | CpG island 21809 | ||
Tssr85286 | 9 | 44 | + | TSS region | transcription start site region 85286 | |
Tssr85287 | 9 | 16 | + | TSS region | transcription start site region 85287 | |
Tssr85288 | 9 | 11 | + | TSS region | transcription start site region 85288 | |
Tssr85289 | 9 | 17 | + | TSS region | transcription start site region 85289 | |
Tssr85290 | 9 | 26 | + | TSS region | transcription start site region 85290 | |
Tssr85291 | 9 | 4 | + | TSS region | transcription start site region 85291 | |
Man2c1os | 9 | 1308 | - | antisense lncRNA gene | mannosidase, alpha, class 2C, member 1, opposite strand | |
Cpgi21810 | 9 | 823 | CpG island | CpG island 21810 | ||
Man2c1 | 9 | 12032 | + | protein coding gene | mannosidase, alpha, class 2C, member 1 | |
Tssr85292 | 9 | 51 | + | TSS region | transcription start site region 85292 | |
Tssr89754 | 9 | 19 | - | TSS region | transcription start site region 89754 | |
Tssr85293 | 9 | 4 | + | TSS region | transcription start site region 85293 | |
Neil1 | 9 | 5505 | - | protein coding gene | nei endonuclease VIII-like 1 (E. coli) | |
Tssr89755 | 9 | 50 | - | TSS region | transcription start site region 89755 | |
Cpgi21811 | 9 | 387 | CpG island | CpG island 21811 | ||
Tssr89756 | 9 | 23 | - | TSS region | transcription start site region 89756 | |
Tssr89757 | 9 | 30 | - | TSS region | transcription start site region 89757 | |
Tssr89758 | 9 | 36 | - | TSS region | transcription start site region 89758 | |
Tssr89759 | 9 | 26 | - | TSS region | transcription start site region 89759 | |
Tssr89760 | 9 | 13 | - | TSS region | transcription start site region 89760 | |
Commd4 | 9 | 3296 | - | protein coding gene | COMM domain containing 4 | |
Cpgi21812 | 9 | 398 | CpG island | CpG island 21812 | ||
Tssr89761 | 9 | 11 | - | TSS region | transcription start site region 89761 | |
Tssr89762 | 9 | 9 | - | TSS region | transcription start site region 89762 | |
Tssr89763 | 9 | 14 | - | TSS region | transcription start site region 89763 | |
Tssr89764 | 9 | 50 | - | TSS region | transcription start site region 89764 | |
Tssr85294 | 9 | 39 | + | TSS region | transcription start site region 85294 | |
Tssr85295 | 9 | 9 | + | TSS region | transcription start site region 85295 | |
Tssr85296 | 9 | 11 | + | TSS region | transcription start site region 85296 | |
1700041C23Rik | 9 | 10833 | + | lincRNA gene | RIKEN cDNA 1700041C23 gene | |
Gm46115 | 9 | 906 | - | lncRNA gene | predicted gene, 46115 | |
Tssr89765 | 9 | 13 | - | TSS region | transcription start site region 89765 | |
Trcg1 | 9 | 13308 | + | protein coding gene | taste receptor cell gene 1 | |
1700017B05Rik | 9 | 9495 | - | protein coding gene | RIKEN cDNA 1700017B05 gene | |
Cpgi21813 | 9 | 1566 | CpG island | CpG island 21813 | ||
Tssr89766 | 9 | 30 | - | TSS region | transcription start site region 89766 | |
Tssr89767 | 9 | 9 | - | TSS region | transcription start site region 89767 | |
Tssr89768 | 9 | 1 | - | TSS region | transcription start site region 89768 | |
Tssr2885 | 9 | 19 | - | TSS region | transcription start site region 2885 | |
Tssr89769 | 9 | 4 | - | TSS region | transcription start site region 89769 | |
Tssr89770 | 9 | 17 | - | TSS region | transcription start site region 89770 | |
Tssr89771 | 9 | 18 | - | TSS region | transcription start site region 89771 | |
Tssr89772 | 9 | 36 | - | TSS region | transcription start site region 89772 | |
Tssr89773 | 9 | 1 | - | TSS region | transcription start site region 89773 | |
Tssr89774 | 9 | 11 | - | TSS region | transcription start site region 89774 | |
Cpgi21814 | 9 | 337 | CpG island | CpG island 21814 | ||
Tssr89775 | 9 | 11 | - | TSS region | transcription start site region 89775 | |
Tssr85297 | 9 | 9 | + | TSS region | transcription start site region 85297 | |
Tssr89776 | 9 | 23 | - | TSS region | transcription start site region 89776 | |
Gm39343 | 9 | 22050 | + | lncRNA gene | predicted gene, 39343 | |
D9Mit314 | 9 | 121 | DNA segment | DNA Segment, Chr 9, Massachusetts Institute of Technology-314 | ||
Gm18996 | 9 | 754 | - | pseudogene | predicted gene, 18996 | |
Tssr85298 | 9 | 11 | + | TSS region | transcription start site region 85298 | |
Gm5121 | 9 | 626 | + | pseudogene | predicted gene 5121 | |
Ppcdc | 9 | 55029 | - | protein coding gene | phosphopantothenoylcysteine decarboxylase | |
4930430J02Rik | 9 | 9294 | + | lncRNA gene | RIKEN cDNA 4930430J02 gene | |
Tssr89777 | 9 | 51 | - | TSS region | transcription start site region 89777 | |
Tssr89778 | 9 | 13 | - | TSS region | transcription start site region 89778 | |
Tssr89779 | 9 | 24 | - | TSS region | transcription start site region 89779 | |
Tssr89780 | 9 | 11 | - | TSS region | transcription start site region 89780 | |
Tssr85299 | 9 | 15 | + | TSS region | transcription start site region 85299 | |
Tssr85300 | 9 | 11 | + | TSS region | transcription start site region 85300 | |
Tssr85301 | 9 | 11 | + | TSS region | transcription start site region 85301 | |
Tssr89781 | 9 | 11 | - | TSS region | transcription start site region 89781 | |
Tssr89782 | 9 | 16 | - | TSS region | transcription start site region 89782 | |
Tssr89783 | 9 | 26 | - | TSS region | transcription start site region 89783 | |
Cpgi21815 | 9 | 329 | CpG island | CpG island 21815 | ||
Tssr89784 | 9 | 45 | - | TSS region | transcription start site region 89784 | |
Scamp5 | 9 | 26733 | - | protein coding gene | secretory carrier membrane protein 5 | |
Tssr89785 | 9 | 16 | - | TSS region | transcription start site region 89785 | |
Tssr89786 | 9 | 10 | - | TSS region | transcription start site region 89786 | |
Tssr89787 | 9 | 31 | - | TSS region | transcription start site region 89787 | |
Tssr89788 | 9 | 11 | - | TSS region | transcription start site region 89788 | |
Tssr89789 | 9 | 32 | - | TSS region | transcription start site region 89789 | |
Tssr89790 | 9 | 36 | - | TSS region | transcription start site region 89790 | |
Tssr89791 | 9 | 14 | - | TSS region | transcription start site region 89791 | |
Cpgi21816 | 9 | 968 | CpG island | CpG island 21816 | ||
Tssr89792 | 9 | 89 | - | TSS region | transcription start site region 89792 | |
Tssr89793 | 9 | 34 | - | TSS region | transcription start site region 89793 | |
D9Wsu149 | 9 | 575 | + | pseudogene | DNA segment, Chr 9, Wayne State University 149 |