Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 9:56147601-56837601

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88 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Tspan3 9 56135884 to 56161070 25186 - protein coding gene tetraspanin 3
Tssr89694 9 56155862 to 56155864 2 - TSS region transcription start site region 89694
Tssr2882 9 56160179 to 56160183 4 + TSS region transcription start site region 2882
Cpgi21793 9 56160286 to 56161201 915 CpG island CpG island 21793
Tssr89695 9 56160940 to 56160968 28 - TSS region transcription start site region 89695
Tssr89696 9 56160998 to 56161045 47 - TSS region transcription start site region 89696
Tssr89697 9 56161051 to 56161075 24 - TSS region transcription start site region 89697
Tssr2883 9 56161092 to 56161097 5 - TSS region transcription start site region 2883
Tssr85249 9 56166443 to 56166453 10 + TSS region transcription start site region 85249
Peak1 9 56201126 to 56418067 216941 - protein coding gene pseudopodium-enriched atypical kinase 1
Tssr89698 9 56201708 to 56201712 4 - TSS region transcription start site region 89698
Tssr89699 9 56202103 to 56202114 11 - TSS region transcription start site region 89699
Cpgi21794 9 56223568 to 56224016 448 CpG island CpG island 21794
Gm24270 9 56223715 to 56223771 56 - miRNA gene predicted gene, 24270
Gm29322 9 56239285 to 56240751 1466 - sense intronic lncRNA gene predicted gene 29322
Tssr89700 9 56244035 to 56244047 12 - TSS region transcription start site region 89700
Tssr89701 9 56244050 to 56244099 49 - TSS region transcription start site region 89701
Tssr85250 9 56248867 to 56248873 6 + TSS region transcription start site region 85250
Tssr85251 9 56257479 to 56257517 38 + TSS region transcription start site region 85251
Peak1os 9 56257890 to 56267780 9890 + antisense lncRNA gene pseudopodium-enriched atypical kinase 1, opposite strand
Tssr89702 9 56259148 to 56259176 28 - TSS region transcription start site region 89702
Gm37842 9 56263599 to 56265167 1568 + unclassified gene predicted gene, 37842
Tssr89703 9 56266417 to 56266423 6 - TSS region transcription start site region 89703
D9Mit142 9 56290406 to 56290587 181 DNA segment DNA segment, Chr 9, Massachusetts Institute of Technology 142
Tssr89704 9 56324398 to 56324403 5 - TSS region transcription start site region 89704
Tssr89705 9 56360985 to 56361007 22 - TSS region transcription start site region 89705
Tssr89706 9 56382123 to 56382126 3 - TSS region transcription start site region 89706
Gm36940 9 56414031 to 56416066 2035 - unclassified gene predicted gene, 36940
Cpgi21795 9 56417338 to 56418832 1494 CpG island CpG island 21795
Tssr89707 9 56418023 to 56418052 29 - TSS region transcription start site region 89707
Tssr89708 9 56418061 to 56418081 20 - TSS region transcription start site region 89708
Tssr89709 9 56418099 to 56418110 11 - TSS region transcription start site region 89709
Tssr85252 9 56418387 to 56418399 12 + TSS region transcription start site region 85252
Tssr85253 9 56418415 to 56418425 10 + TSS region transcription start site region 85253
Tssr85254 9 56418624 to 56418681 57 + TSS region transcription start site region 85254
Hmg20a 9 56418628 to 56496936 78308 + protein coding gene high mobility group 20A
Tssr85255 9 56418697 to 56418709 12 + TSS region transcription start site region 85255
Tssr85256 9 56418805 to 56418847 42 + TSS region transcription start site region 85256
Tssr89710 9 56418835 to 56418846 11 - TSS region transcription start site region 89710
Tssr85257 9 56418867 to 56418874 7 + TSS region transcription start site region 85257
Tssr89711 9 56418928 to 56418963 35 - TSS region transcription start site region 89711
Tssr85258 9 56419485 to 56419489 4 + TSS region transcription start site region 85258
Tssr85259 9 56424416 to 56424419 3 + TSS region transcription start site region 85259
Tssr85260 9 56437422 to 56437431 9 + TSS region transcription start site region 85260
Gm2296 9 56437439 to 56438426 987 + pseudogene predicted gene 2296
Tssr85261 9 56437585 to 56437609 24 + TSS region transcription start site region 85261
5830432F11Rik 9 56448704 to 56449755 1051 unclassified gene RIKEN cDNA 5830432F11 gene
Tssr85262 9 56477249 to 56477267 18 + TSS region transcription start site region 85262
Spcq2 9 56492601 to 56492601 0 QTL sperm count QTL 2
Gm47175 9 56504825 to 56506661 1836 - unclassified gene predicted gene, 47175
Tssr89712 9 56506597 to 56506604 7 - TSS region transcription start site region 89712
Gm47176 9 56539905 to 56540232 327 + lincRNA gene predicted gene, 47176
Gm47178 9 56543756 to 56544097 341 + pseudogene predicted gene, 47178
Tssr89713 9 56549131 to 56549139 8 - TSS region transcription start site region 89713
Gm31529 9 56573507 to 56580207 6700 - lncRNA gene predicted gene, 31529
Gm26868 9 56606693 to 56614473 7780 + lincRNA gene predicted gene, 26868
Lingo1 9 56618475 to 56796468 177993 - protein coding gene leucine rich repeat and Ig domain containing 1
Cpgi21796 9 56619516 to 56621332 1816 CpG island CpG island 21796
Tssr89714 9 56620332 to 56620344 12 - TSS region transcription start site region 89714
Tssr89715 9 56620603 to 56620612 9 - TSS region transcription start site region 89715
Tssr89716 9 56620618 to 56620633 15 - TSS region transcription start site region 89716
Tssr89717 9 56620686 to 56620697 11 - TSS region transcription start site region 89717
Tssr89718 9 56621218 to 56621229 11 - TSS region transcription start site region 89718
Tssr89719 9 56621329 to 56621338 9 - TSS region transcription start site region 89719
Cpgi21797 9 56634787 to 56636498 1711 CpG island CpG island 21797
Tssr89720 9 56635098 to 56635135 37 - TSS region transcription start site region 89720
Tssr89721 9 56635605 to 56635620 15 - TSS region transcription start site region 89721
Tssr89722 9 56635624 to 56635691 67 - TSS region transcription start site region 89722
Tssr89723 9 56635697 to 56635717 20 - TSS region transcription start site region 89723
Tssr89724 9 56635860 to 56635880 20 - TSS region transcription start site region 89724
Tssr89725 9 56635884 to 56635897 13 - TSS region transcription start site region 89725
Tssr89726 9 56635962 to 56635977 15 - TSS region transcription start site region 89726
Tssr89727 9 56635992 to 56635998 6 - TSS region transcription start site region 89727
Tssr89728 9 56636002 to 56636007 5 - TSS region transcription start site region 89728
Tssr89729 9 56636019 to 56636026 7 - TSS region transcription start site region 89729
Tssr89730 9 56636031 to 56636036 5 - TSS region transcription start site region 89730
Tssr89731 9 56636364 to 56636377 13 - TSS region transcription start site region 89731
Tssr89732 9 56637342 to 56637359 17 - TSS region transcription start site region 89732
Cpgi21798 9 56637478 to 56637963 485 CpG island CpG island 21798
Gm31642 9 56664906 to 56672183 7277 + lncRNA gene predicted gene, 31642
Cpgi21799 9 56795353 to 56797430 2077 CpG island CpG island 21799
Tssr89733 9 56795766 to 56795824 58 - TSS region transcription start site region 89733
Tssr89734 9 56796220 to 56796243 23 - TSS region transcription start site region 89734
Tssr89735 9 56796270 to 56796319 49 - TSS region transcription start site region 89735
Tssr89736 9 56796872 to 56796955 83 - TSS region transcription start site region 89736
Gm31586 9 56796958 to 56798407 1449 + lncRNA gene predicted gene, 31586
Gm47235 9 56798962 to 56801261 2299 - lincRNA gene predicted gene, 47235
Cpgi21800 9 56825464 to 56825766 302 CpG island CpG island 21800