Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 9:56142482-61072484

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850 genes found. Result truncated to 200 rows.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Fecq4 9 47631726 to 57897921 10266195 QTL fecundity QTL 4
repro36 9 50199725 to 60494414 10294689 heritable phenotypic marker reproductive mutant 36, JAX Reproductive Mutagenesis Program
repro46 9 50753738 to 56901655 6147917 heritable phenotypic marker reproductive mutant 46, JAX Reproductive Mutagenesis Program
Tspan3 9 56135884 to 56161070 25186 - protein coding gene tetraspanin 3
Tssr89693 9 56145276 to 56145284 8 - TSS region transcription start site region 89693
Tssr2881 9 56146119 to 56146120 1 + TSS region transcription start site region 2881
Tssr89694 9 56155862 to 56155864 2 - TSS region transcription start site region 89694
Tssr2882 9 56160179 to 56160183 4 + TSS region transcription start site region 2882
Cpgi21793 9 56160286 to 56161201 915 CpG island CpG island 21793
Tssr89695 9 56160940 to 56160968 28 - TSS region transcription start site region 89695
Tssr89696 9 56160998 to 56161045 47 - TSS region transcription start site region 89696
Tssr89697 9 56161051 to 56161075 24 - TSS region transcription start site region 89697
Tssr2883 9 56161092 to 56161097 5 - TSS region transcription start site region 2883
Tssr85249 9 56166443 to 56166453 10 + TSS region transcription start site region 85249
Peak1 9 56201126 to 56418067 216941 - protein coding gene pseudopodium-enriched atypical kinase 1
Tssr89698 9 56201708 to 56201712 4 - TSS region transcription start site region 89698
Tssr89699 9 56202103 to 56202114 11 - TSS region transcription start site region 89699
Cpgi21794 9 56223568 to 56224016 448 CpG island CpG island 21794
Gm24270 9 56223715 to 56223771 56 - miRNA gene predicted gene, 24270
Gm29322 9 56239285 to 56240751 1466 - sense intronic lncRNA gene predicted gene 29322
Tssr89700 9 56244035 to 56244047 12 - TSS region transcription start site region 89700
Tssr89701 9 56244050 to 56244099 49 - TSS region transcription start site region 89701
Tssr85250 9 56248867 to 56248873 6 + TSS region transcription start site region 85250
Tssr85251 9 56257479 to 56257517 38 + TSS region transcription start site region 85251
Peak1os 9 56257890 to 56267780 9890 + antisense lncRNA gene pseudopodium-enriched atypical kinase 1, opposite strand
Tssr89702 9 56259148 to 56259176 28 - TSS region transcription start site region 89702
Gm37842 9 56263599 to 56265167 1568 + unclassified gene predicted gene, 37842
Tssr89703 9 56266417 to 56266423 6 - TSS region transcription start site region 89703
D9Mit142 9 56290406 to 56290587 181 DNA segment DNA segment, Chr 9, Massachusetts Institute of Technology 142
Tssr89704 9 56324398 to 56324403 5 - TSS region transcription start site region 89704
Tssr89705 9 56360985 to 56361007 22 - TSS region transcription start site region 89705
Tssr89706 9 56382123 to 56382126 3 - TSS region transcription start site region 89706
Gm36940 9 56414031 to 56416066 2035 - unclassified gene predicted gene, 36940
Cpgi21795 9 56417338 to 56418832 1494 CpG island CpG island 21795
Tssr89707 9 56418023 to 56418052 29 - TSS region transcription start site region 89707
Tssr89708 9 56418061 to 56418081 20 - TSS region transcription start site region 89708
Tssr89709 9 56418099 to 56418110 11 - TSS region transcription start site region 89709
Tssr85252 9 56418387 to 56418399 12 + TSS region transcription start site region 85252
Tssr85253 9 56418415 to 56418425 10 + TSS region transcription start site region 85253
Tssr85254 9 56418624 to 56418681 57 + TSS region transcription start site region 85254
Hmg20a 9 56418628 to 56496936 78308 + protein coding gene high mobility group 20A
Tssr85255 9 56418697 to 56418709 12 + TSS region transcription start site region 85255
Tssr85256 9 56418805 to 56418847 42 + TSS region transcription start site region 85256
Tssr89710 9 56418835 to 56418846 11 - TSS region transcription start site region 89710
Tssr85257 9 56418867 to 56418874 7 + TSS region transcription start site region 85257
Tssr89711 9 56418928 to 56418963 35 - TSS region transcription start site region 89711
Tssr85258 9 56419485 to 56419489 4 + TSS region transcription start site region 85258
Tssr85259 9 56424416 to 56424419 3 + TSS region transcription start site region 85259
Tssr85260 9 56437422 to 56437431 9 + TSS region transcription start site region 85260
Gm2296 9 56437439 to 56438426 987 + pseudogene predicted gene 2296
Tssr85261 9 56437585 to 56437609 24 + TSS region transcription start site region 85261
5830432F11Rik 9 56448704 to 56449755 1051 unclassified gene RIKEN cDNA 5830432F11 gene
Tssr85262 9 56477249 to 56477267 18 + TSS region transcription start site region 85262
Spcq2 9 56492601 to 56492601 0 QTL sperm count QTL 2
Gm47175 9 56504825 to 56506661 1836 - unclassified gene predicted gene, 47175
Tssr89712 9 56506597 to 56506604 7 - TSS region transcription start site region 89712
Gm47176 9 56539905 to 56540232 327 + lincRNA gene predicted gene, 47176
Gm47178 9 56543756 to 56544097 341 + pseudogene predicted gene, 47178
Tssr89713 9 56549131 to 56549139 8 - TSS region transcription start site region 89713
Gm31529 9 56573507 to 56580207 6700 - lncRNA gene predicted gene, 31529
Gm26868 9 56606693 to 56614473 7780 + lincRNA gene predicted gene, 26868
Lingo1 9 56618475 to 56796468 177993 - protein coding gene leucine rich repeat and Ig domain containing 1
Cpgi21796 9 56619516 to 56621332 1816 CpG island CpG island 21796
Tssr89714 9 56620332 to 56620344 12 - TSS region transcription start site region 89714
Tssr89715 9 56620603 to 56620612 9 - TSS region transcription start site region 89715
Tssr89716 9 56620618 to 56620633 15 - TSS region transcription start site region 89716
Tssr89717 9 56620686 to 56620697 11 - TSS region transcription start site region 89717
Tssr89718 9 56621218 to 56621229 11 - TSS region transcription start site region 89718
Tssr89719 9 56621329 to 56621338 9 - TSS region transcription start site region 89719
Cpgi21797 9 56634787 to 56636498 1711 CpG island CpG island 21797
Tssr89720 9 56635098 to 56635135 37 - TSS region transcription start site region 89720
Tssr89721 9 56635605 to 56635620 15 - TSS region transcription start site region 89721
Tssr89722 9 56635624 to 56635691 67 - TSS region transcription start site region 89722
Tssr89723 9 56635697 to 56635717 20 - TSS region transcription start site region 89723
Tssr89724 9 56635860 to 56635880 20 - TSS region transcription start site region 89724
Tssr89725 9 56635884 to 56635897 13 - TSS region transcription start site region 89725
Tssr89726 9 56635962 to 56635977 15 - TSS region transcription start site region 89726
Tssr89727 9 56635992 to 56635998 6 - TSS region transcription start site region 89727
Tssr89728 9 56636002 to 56636007 5 - TSS region transcription start site region 89728
Tssr89729 9 56636019 to 56636026 7 - TSS region transcription start site region 89729
Tssr89730 9 56636031 to 56636036 5 - TSS region transcription start site region 89730
Tssr89731 9 56636364 to 56636377 13 - TSS region transcription start site region 89731
Tssr89732 9 56637342 to 56637359 17 - TSS region transcription start site region 89732
Cpgi21798 9 56637478 to 56637963 485 CpG island CpG island 21798
Gm31642 9 56664906 to 56672183 7277 + lncRNA gene predicted gene, 31642
Cpgi21799 9 56795353 to 56797430 2077 CpG island CpG island 21799
Tssr89733 9 56795766 to 56795824 58 - TSS region transcription start site region 89733
Tssr89734 9 56796220 to 56796243 23 - TSS region transcription start site region 89734
Tssr89735 9 56796270 to 56796319 49 - TSS region transcription start site region 89735
Tssr89736 9 56796872 to 56796955 83 - TSS region transcription start site region 89736
Gm31586 9 56796958 to 56798407 1449 + lncRNA gene predicted gene, 31586
Gm47235 9 56798962 to 56801261 2299 - lincRNA gene predicted gene, 47235
Cpgi21800 9 56825464 to 56825766 302 CpG island CpG island 21800
Odf3l1 9 56848656 to 56860510 11854 - protein coding gene outer dense fiber of sperm tails 3-like 1
Tssr89737 9 56851945 to 56852018 73 - TSS region transcription start site region 89737
Tssr89738 9 56852026 to 56852030 4 - TSS region transcription start site region 89738
Tssr89739 9 56852033 to 56852036 3 - TSS region transcription start site region 89739
Tssr89740 9 56860475 to 56860507 32 - TSS region transcription start site region 89740
Cpgi21801 9 56864974 to 56865280 306 CpG island CpG island 21801
Tssr85263 9 56865018 to 56865047 29 + TSS region transcription start site region 85263
Tssr85264 9 56865051 to 56865072 21 + TSS region transcription start site region 85264
Tssr85265 9 56865079 to 56865090 11 + TSS region transcription start site region 85265
Tssr85266 9 56865095 to 56865098 3 + TSS region transcription start site region 85266
Cspg4 9 56865104 to 56899870 34766 + protein coding gene chondroitin sulfate proteoglycan 4
Tssr85267 9 56865107 to 56865115 8 + TSS region transcription start site region 85267
Tssr89741 9 56883007 to 56883017 10 - TSS region transcription start site region 89741
Cpgi21802 9 56890051 to 56890436 385 CpG island CpG island 21802
D9Mit301 9 56901536 to 56901655 119 DNA segment DNA Segment, Chr 9, Massachusetts Institute of Technology 301
Gm47237 9 56903461 to 56904996 1535 + lincRNA gene predicted gene, 47237
Snx33 9 56917193 to 56928371 11178 - protein coding gene sorting nexin 33
Tssr89742 9 56925783 to 56925797 14 - TSS region transcription start site region 89742
Tssr89743 9 56925924 to 56925930 6 - TSS region transcription start site region 89743
Tssr89744 9 56926854 to 56926858 4 - TSS region transcription start site region 89744
Tssr89745 9 56927479 to 56927492 13 - TSS region transcription start site region 89745
Cpgi21803 9 56927488 to 56928693 1205 CpG island CpG island 21803
Tssr89746 9 56927972 to 56927995 23 - TSS region transcription start site region 89746
Tssr89747 9 56928056 to 56928122 66 - TSS region transcription start site region 89747
Tssr89748 9 56928139 to 56928161 22 - TSS region transcription start site region 89748
Tssr89749 9 56928295 to 56928314 19 - TSS region transcription start site region 89749
Tssr89750 9 56928350 to 56928392 42 - TSS region transcription start site region 89750
4930442G15Rik 9 56931631 to 56933545 1914 + lincRNA gene RIKEN cDNA 4930442G15 gene
Gm19936 9 56932431 to 56933268 837 - pseudogene predicted gene, 19936
Cpgi21804 9 56937273 to 56938097 824 CpG island CpG island 21804
Tssr85268 9 56937462 to 56937502 40 + TSS region transcription start site region 85268
Imp3 9 56937500 to 56938398 898 + protein coding gene IMP3, U3 small nucleolar ribonucleoprotein
Tssr85269 9 56937812 to 56937840 28 + TSS region transcription start site region 85269
Cpgi21805 9 56950547 to 56951309 762 CpG island CpG island 21805
Tssr89751 9 56950784 to 56950804 20 - TSS region transcription start site region 89751
Tssr85270 9 56950899 to 56950932 33 + TSS region transcription start site region 85270
Snupn 9 56950924 to 56983206 32282 + protein coding gene snurportin 1
Tssr85271 9 56950964 to 56950973 9 + TSS region transcription start site region 85271
Tssr85272 9 56952747 to 56952751 4 + TSS region transcription start site region 85272
B930032C10Rik 9 56973873 to 56974737 864 unclassified gene RIKEN cDNA B930032C10 gene
Tssr85273 9 56994565 to 56994608 43 + TSS region transcription start site region 85273
Cpgi21806 9 56994626 to 56996116 1490 CpG island CpG island 21806
Tssr85274 9 56994863 to 56994874 11 + TSS region transcription start site region 85274
Tssr85275 9 56994889 to 56994918 29 + TSS region transcription start site region 85275
Tssr85276 9 56994932 to 56994986 54 + TSS region transcription start site region 85276
Ptpn9 9 56994968 to 57062808 67840 + protein coding gene protein tyrosine phosphatase, non-receptor type 9
Tssr85277 9 56995077 to 56995117 40 + TSS region transcription start site region 85277
Tssr85278 9 56995126 to 56995139 13 + TSS region transcription start site region 85278
Tssr85279 9 56995378 to 56995464 86 + TSS region transcription start site region 85279
Tssr85280 9 56995554 to 56995576 22 + TSS region transcription start site region 85280
Tssr85281 9 56997526 to 56997530 4 + TSS region transcription start site region 85281
Gm10658 9 57056897 to 57071966 15069 - antisense lncRNA gene predicted gene 10658
Tssr89752 9 57071850 to 57071862 12 - TSS region transcription start site region 89752
Tssr89753 9 57071879 to 57071905 26 - TSS region transcription start site region 89753
Cpgi21807 9 57071928 to 57074202 2274 CpG island CpG island 21807
Tssr85282 9 57072024 to 57072048 24 + TSS region transcription start site region 85282
Sin3a 9 57072040 to 57128366 56326 + protein coding gene transcriptional regulator, SIN3A (yeast)
Tssr85283 9 57072065 to 57072076 11 + TSS region transcription start site region 85283
Tssr85284 9 57073735 to 57073754 19 + TSS region transcription start site region 85284
Tssr85285 9 57073858 to 57073872 14 + TSS region transcription start site region 85285
Cpgi21808 9 57074454 to 57074607 153 CpG island CpG island 21808
2700012I20Rik 9 57075216 to 57076013 797 - lincRNA gene RIKEN cDNA 2700012I20 gene
Tssr2884 9 57075435 to 57075443 8 + TSS region transcription start site region 2884
Cpgi21809 9 57075675 to 57077525 1850 CpG island CpG island 21809
Tssr85286 9 57076343 to 57076387 44 + TSS region transcription start site region 85286
Tssr85287 9 57076395 to 57076411 16 + TSS region transcription start site region 85287
Tssr85288 9 57094463 to 57094474 11 + TSS region transcription start site region 85288
Tssr85289 9 57095362 to 57095379 17 + TSS region transcription start site region 85289
Tssr85290 9 57096746 to 57096772 26 + TSS region transcription start site region 85290
Tssr85291 9 57117709 to 57117713 4 + TSS region transcription start site region 85291
Man2c1os 9 57129982 to 57131290 1308 - antisense lncRNA gene mannosidase, alpha, class 2C, member 1, opposite strand
Cpgi21810 9 57130598 to 57131421 823 CpG island CpG island 21810
Man2c1 9 57130690 to 57142722 12032 + protein coding gene mannosidase, alpha, class 2C, member 1
Tssr85292 9 57130742 to 57130793 51 + TSS region transcription start site region 85292
Tssr89754 9 57131233 to 57131252 19 - TSS region transcription start site region 89754
Tssr85293 9 57133758 to 57133762 4 + TSS region transcription start site region 85293
Neil1 9 57142800 to 57148305 5505 - protein coding gene nei endonuclease VIII-like 1 (E. coli)
Tssr89755 9 57148101 to 57148151 50 - TSS region transcription start site region 89755
Cpgi21811 9 57148127 to 57148514 387 CpG island CpG island 21811
Tssr89756 9 57148217 to 57148240 23 - TSS region transcription start site region 89756
Tssr89757 9 57148295 to 57148325 30 - TSS region transcription start site region 89757
Tssr89758 9 57148338 to 57148374 36 - TSS region transcription start site region 89758
Tssr89759 9 57148379 to 57148405 26 - TSS region transcription start site region 89759
Tssr89760 9 57148437 to 57148450 13 - TSS region transcription start site region 89760
Commd4 9 57155035 to 57158331 3296 - protein coding gene COMM domain containing 4
Cpgi21812 9 57157978 to 57158376 398 CpG island CpG island 21812
Tssr89761 9 57158189 to 57158200 11 - TSS region transcription start site region 89761
Tssr89762 9 57158243 to 57158252 9 - TSS region transcription start site region 89762
Tssr89763 9 57158271 to 57158285 14 - TSS region transcription start site region 89763
Tssr89764 9 57158288 to 57158338 50 - TSS region transcription start site region 89764
Tssr85294 9 57158377 to 57158416 39 + TSS region transcription start site region 85294
Tssr85295 9 57175257 to 57175266 9 + TSS region transcription start site region 85295
Tssr85296 9 57175269 to 57175280 11 + TSS region transcription start site region 85296
1700041C23Rik 9 57175275 to 57186108 10833 + lincRNA gene RIKEN cDNA 1700041C23 gene
Gm46115 9 57202289 to 57203195 906 - lncRNA gene predicted gene, 46115
Tssr89765 9 57203073 to 57203086 13 - TSS region transcription start site region 89765
Trcg1 9 57236556 to 57249864 13308 + protein coding gene taste receptor cell gene 1
1700017B05Rik 9 57253117 to 57262612 9495 - protein coding gene RIKEN cDNA 1700017B05 gene
Cpgi21813 9 57261336 to 57262902 1566 CpG island CpG island 21813
Tssr89766 9 57261494 to 57261524 30 - TSS region transcription start site region 89766
Tssr89767 9 57261576 to 57261585 9 - TSS region transcription start site region 89767
Tssr89768 9 57261709 to 57261710 1 - TSS region transcription start site region 89768
Tssr2885 9 57261874 to 57261893 19 - TSS region transcription start site region 2885
Tssr89769 9 57261977 to 57261981 4 - TSS region transcription start site region 89769
Tssr89770 9 57262563 to 57262580 17 - TSS region transcription start site region 89770
Tssr89771 9 57262591 to 57262609 18 - TSS region transcription start site region 89771
Tssr89772 9 57262761 to 57262797 36 - TSS region transcription start site region 89772