Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 9:56119398-56529403

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64 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Pstpip1 9 56089962 to 56128888 38926 + protein coding gene proline-serine-threonine phosphatase-interacting protein 1
Tssr85245 9 56119645 to 56119649 4 + TSS region transcription start site region 85245
Tssr85246 9 56120558 to 56120570 12 + TSS region transcription start site region 85246
Tssr85247 9 56123254 to 56123265 11 + TSS region transcription start site region 85247
Tssr85248 9 56123289 to 56123305 16 + TSS region transcription start site region 85248
Tspan3 9 56135884 to 56161070 25186 - protein coding gene tetraspanin 3
Tssr89687 9 56136137 to 56136153 16 - TSS region transcription start site region 89687
Tssr89688 9 56136245 to 56136286 41 - TSS region transcription start site region 89688
Tssr89689 9 56136350 to 56136360 10 - TSS region transcription start site region 89689
Tssr89690 9 56136371 to 56136390 19 - TSS region transcription start site region 89690
Tssr89691 9 56136460 to 56136517 57 - TSS region transcription start site region 89691
Tssr89692 9 56139384 to 56139385 1 - TSS region transcription start site region 89692
Tssr89693 9 56145276 to 56145284 8 - TSS region transcription start site region 89693
Tssr2881 9 56146119 to 56146120 1 + TSS region transcription start site region 2881
Tssr89694 9 56155862 to 56155864 2 - TSS region transcription start site region 89694
Tssr2882 9 56160179 to 56160183 4 + TSS region transcription start site region 2882
Cpgi21793 9 56160286 to 56161201 915 CpG island CpG island 21793
Tssr89695 9 56160940 to 56160968 28 - TSS region transcription start site region 89695
Tssr89696 9 56160998 to 56161045 47 - TSS region transcription start site region 89696
Tssr89697 9 56161051 to 56161075 24 - TSS region transcription start site region 89697
Tssr2883 9 56161092 to 56161097 5 - TSS region transcription start site region 2883
Tssr85249 9 56166443 to 56166453 10 + TSS region transcription start site region 85249
Peak1 9 56201126 to 56418067 216941 - protein coding gene pseudopodium-enriched atypical kinase 1
Tssr89698 9 56201708 to 56201712 4 - TSS region transcription start site region 89698
Tssr89699 9 56202103 to 56202114 11 - TSS region transcription start site region 89699
Cpgi21794 9 56223568 to 56224016 448 CpG island CpG island 21794
Gm24270 9 56223715 to 56223771 56 - miRNA gene predicted gene, 24270
Gm29322 9 56239285 to 56240751 1466 - sense intronic lncRNA gene predicted gene 29322
Tssr89700 9 56244035 to 56244047 12 - TSS region transcription start site region 89700
Tssr89701 9 56244050 to 56244099 49 - TSS region transcription start site region 89701
Tssr85250 9 56248867 to 56248873 6 + TSS region transcription start site region 85250
Tssr85251 9 56257479 to 56257517 38 + TSS region transcription start site region 85251
Peak1os 9 56257890 to 56267780 9890 + antisense lncRNA gene pseudopodium-enriched atypical kinase 1, opposite strand
Tssr89702 9 56259148 to 56259176 28 - TSS region transcription start site region 89702
Gm37842 9 56263599 to 56265167 1568 + unclassified gene predicted gene, 37842
Tssr89703 9 56266417 to 56266423 6 - TSS region transcription start site region 89703
D9Mit142 9 56290406 to 56290587 181 DNA segment DNA segment, Chr 9, Massachusetts Institute of Technology 142
Tssr89704 9 56324398 to 56324403 5 - TSS region transcription start site region 89704
Tssr89705 9 56360985 to 56361007 22 - TSS region transcription start site region 89705
Tssr89706 9 56382123 to 56382126 3 - TSS region transcription start site region 89706
Gm36940 9 56414031 to 56416066 2035 - unclassified gene predicted gene, 36940
Cpgi21795 9 56417338 to 56418832 1494 CpG island CpG island 21795
Tssr89707 9 56418023 to 56418052 29 - TSS region transcription start site region 89707
Tssr89708 9 56418061 to 56418081 20 - TSS region transcription start site region 89708
Tssr89709 9 56418099 to 56418110 11 - TSS region transcription start site region 89709
Tssr85252 9 56418387 to 56418399 12 + TSS region transcription start site region 85252
Tssr85253 9 56418415 to 56418425 10 + TSS region transcription start site region 85253
Tssr85254 9 56418624 to 56418681 57 + TSS region transcription start site region 85254
Hmg20a 9 56418628 to 56496936 78308 + protein coding gene high mobility group 20A
Tssr85255 9 56418697 to 56418709 12 + TSS region transcription start site region 85255
Tssr85256 9 56418805 to 56418847 42 + TSS region transcription start site region 85256
Tssr89710 9 56418835 to 56418846 11 - TSS region transcription start site region 89710
Tssr85257 9 56418867 to 56418874 7 + TSS region transcription start site region 85257
Tssr89711 9 56418928 to 56418963 35 - TSS region transcription start site region 89711
Tssr85258 9 56419485 to 56419489 4 + TSS region transcription start site region 85258
Tssr85259 9 56424416 to 56424419 3 + TSS region transcription start site region 85259
Tssr85260 9 56437422 to 56437431 9 + TSS region transcription start site region 85260
Gm2296 9 56437439 to 56438426 987 + pseudogene predicted gene 2296
Tssr85261 9 56437585 to 56437609 24 + TSS region transcription start site region 85261
5830432F11Rik 9 56448704 to 56449755 1051 unclassified gene RIKEN cDNA 5830432F11 gene
Tssr85262 9 56477249 to 56477267 18 + TSS region transcription start site region 85262
Spcq2 9 56492601 to 56492601 0 QTL sperm count QTL 2
Gm47175 9 56504825 to 56506661 1836 - unclassified gene predicted gene, 47175
Tssr89712 9 56506597 to 56506604 7 - TSS region transcription start site region 89712