Gene symbol |
Chromo- some |
Coordinates (bp, mm10) |
Size (bp) |
Strand |
Feature Type |
Gene name |
---|---|---|---|---|---|---|
Fecq4 | 9 | 10266195 | QTL | fecundity QTL 4 | ||
repro46 | 9 | 6147917 | heritable phenotypic marker | reproductive mutant 46, JAX Reproductive Mutagenesis Program | ||
Scaper | 9 | 388240 | - | protein coding gene | S phase cyclin A-associated protein in the ER | |
1110019B24Rik | 9 | 1049 | unclassified gene | RIKEN cDNA 1110019B24 gene | ||
Cpgi21791 | 9 | 749 | CpG island | CpG island 21791 | ||
Tssr89684 | 9 | 50 | - | TSS region | transcription start site region 89684 | |
Tssr89685 | 9 | 28 | - | TSS region | transcription start site region 89685 | |
Tssr85222 | 9 | 42 | + | TSS region | transcription start site region 85222 | |
Tssr85223 | 9 | 31 | + | TSS region | transcription start site region 85223 | |
Tssr85224 | 9 | 9 | + | TSS region | transcription start site region 85224 | |
Gm7435 | 9 | 2466 | + | pseudogene | predicted gene 7435 | |
4930563M21Rik | 9 | 47961 | - | protein coding gene | RIKEN cDNA 4930563M21 gene | |
Gm7439 | 9 | 834 | + | pseudogene | predicted gene 7439 | |
Tssr89686 | 9 | 19 | - | TSS region | transcription start site region 89686 | |
Tssr85225 | 9 | 24 | + | TSS region | transcription start site region 85225 | |
Tssr85226 | 9 | 18 | + | TSS region | transcription start site region 85226 | |
Gm7444 | 9 | 2427 | + | pseudogene | predicted gene 7444 | |
Cpgi21792 | 9 | 833 | CpG island | CpG island 21792 | ||
Rcn2 | 9 | 17238 | + | protein coding gene | reticulocalbin 2 | |
Tssr85227 | 9 | 18 | + | TSS region | transcription start site region 85227 | |
Tssr85228 | 9 | 22 | + | TSS region | transcription start site region 85228 | |
Tssr85229 | 9 | 3 | + | TSS region | transcription start site region 85229 | |
Tssr85230 | 9 | 40 | + | TSS region | transcription start site region 85230 | |
Gm31261 | 9 | 3116 | - | lncRNA gene | predicted gene, 31261 | |
Tssr85231 | 9 | 12 | + | TSS region | transcription start site region 85231 | |
Pstpip1 | 9 | 38926 | + | protein coding gene | proline-serine-threonine phosphatase-interacting protein 1 | |
Tssr85232 | 9 | 21 | + | TSS region | transcription start site region 85232 | |
Tssr85233 | 9 | 19 | + | TSS region | transcription start site region 85233 | |
Tssr85234 | 9 | 45 | + | TSS region | transcription start site region 85234 | |
Tssr85235 | 9 | 14 | + | TSS region | transcription start site region 85235 | |
Tssr2880 | 9 | 5 | + | TSS region | transcription start site region 2880 | |
Tssr85236 | 9 | 15 | + | TSS region | transcription start site region 85236 | |
Tssr85237 | 9 | 28 | + | TSS region | transcription start site region 85237 | |
Tssr85238 | 9 | 16 | + | TSS region | transcription start site region 85238 | |
Tssr85239 | 9 | 26 | + | TSS region | transcription start site region 85239 | |
Tssr85240 | 9 | 31 | + | TSS region | transcription start site region 85240 | |
Tssr85241 | 9 | 11 | + | TSS region | transcription start site region 85241 | |
Tssr85242 | 9 | 13 | + | TSS region | transcription start site region 85242 | |
Tssr85243 | 9 | 36 | + | TSS region | transcription start site region 85243 | |
Tssr85244 | 9 | 11 | + | TSS region | transcription start site region 85244 | |
Tssr85245 | 9 | 4 | + | TSS region | transcription start site region 85245 | |
Tssr85246 | 9 | 12 | + | TSS region | transcription start site region 85246 | |
Tssr85247 | 9 | 11 | + | TSS region | transcription start site region 85247 | |
Tssr85248 | 9 | 16 | + | TSS region | transcription start site region 85248 | |
Tspan3 | 9 | 25186 | - | protein coding gene | tetraspanin 3 | |
Tssr89687 | 9 | 16 | - | TSS region | transcription start site region 89687 | |
Tssr89688 | 9 | 41 | - | TSS region | transcription start site region 89688 | |
Tssr89689 | 9 | 10 | - | TSS region | transcription start site region 89689 | |
Tssr89690 | 9 | 19 | - | TSS region | transcription start site region 89690 | |
Tssr89691 | 9 | 57 | - | TSS region | transcription start site region 89691 | |
Tssr89692 | 9 | 1 | - | TSS region | transcription start site region 89692 | |
Tssr89693 | 9 | 8 | - | TSS region | transcription start site region 89693 | |
Tssr2881 | 9 | 1 | + | TSS region | transcription start site region 2881 | |
Tssr89694 | 9 | 2 | - | TSS region | transcription start site region 89694 | |
Tssr2882 | 9 | 4 | + | TSS region | transcription start site region 2882 | |
Cpgi21793 | 9 | 915 | CpG island | CpG island 21793 | ||
Tssr89695 | 9 | 28 | - | TSS region | transcription start site region 89695 | |
Tssr89696 | 9 | 47 | - | TSS region | transcription start site region 89696 | |
Tssr89697 | 9 | 24 | - | TSS region | transcription start site region 89697 | |
Tssr2883 | 9 | 5 | - | TSS region | transcription start site region 2883 | |
Tssr85249 | 9 | 10 | + | TSS region | transcription start site region 85249 | |
Peak1 | 9 | 216941 | - | protein coding gene | pseudopodium-enriched atypical kinase 1 | |
Tssr89698 | 9 | 4 | - | TSS region | transcription start site region 89698 | |
Tssr89699 | 9 | 11 | - | TSS region | transcription start site region 89699 | |
Cpgi21794 | 9 | 448 | CpG island | CpG island 21794 | ||
Gm24270 | 9 | 56 | - | miRNA gene | predicted gene, 24270 | |
Gm29322 | 9 | 1466 | - | sense intronic lncRNA gene | predicted gene 29322 | |
Tssr89700 | 9 | 12 | - | TSS region | transcription start site region 89700 | |
Tssr89701 | 9 | 49 | - | TSS region | transcription start site region 89701 | |
Tssr85250 | 9 | 6 | + | TSS region | transcription start site region 85250 | |
Tssr85251 | 9 | 38 | + | TSS region | transcription start site region 85251 | |
Peak1os | 9 | 9890 | + | antisense lncRNA gene | pseudopodium-enriched atypical kinase 1, opposite strand | |
Tssr89702 | 9 | 28 | - | TSS region | transcription start site region 89702 | |
Gm37842 | 9 | 1568 | + | unclassified gene | predicted gene, 37842 | |
Tssr89703 | 9 | 6 | - | TSS region | transcription start site region 89703 | |
D9Mit142 | 9 | 181 | DNA segment | DNA segment, Chr 9, Massachusetts Institute of Technology 142 | ||
Tssr89704 | 9 | 5 | - | TSS region | transcription start site region 89704 | |
Tssr89705 | 9 | 22 | - | TSS region | transcription start site region 89705 | |
Tssr89706 | 9 | 3 | - | TSS region | transcription start site region 89706 | |
Gm36940 | 9 | 2035 | - | unclassified gene | predicted gene, 36940 | |
Cpgi21795 | 9 | 1494 | CpG island | CpG island 21795 | ||
Tssr89707 | 9 | 29 | - | TSS region | transcription start site region 89707 | |
Tssr89708 | 9 | 20 | - | TSS region | transcription start site region 89708 | |
Tssr89709 | 9 | 11 | - | TSS region | transcription start site region 89709 | |
Tssr85252 | 9 | 12 | + | TSS region | transcription start site region 85252 | |
Tssr85253 | 9 | 10 | + | TSS region | transcription start site region 85253 | |
Tssr85254 | 9 | 57 | + | TSS region | transcription start site region 85254 | |
Hmg20a | 9 | 78308 | + | protein coding gene | high mobility group 20A | |
Tssr85255 | 9 | 12 | + | TSS region | transcription start site region 85255 | |
Tssr85256 | 9 | 42 | + | TSS region | transcription start site region 85256 | |
Tssr89710 | 9 | 11 | - | TSS region | transcription start site region 89710 | |
Tssr85257 | 9 | 7 | + | TSS region | transcription start site region 85257 | |
Tssr89711 | 9 | 35 | - | TSS region | transcription start site region 89711 | |
Tssr85258 | 9 | 4 | + | TSS region | transcription start site region 85258 | |
Tssr85259 | 9 | 3 | + | TSS region | transcription start site region 85259 | |
Tssr85260 | 9 | 9 | + | TSS region | transcription start site region 85260 | |
Gm2296 | 9 | 987 | + | pseudogene | predicted gene 2296 | |
Tssr85261 | 9 | 24 | + | TSS region | transcription start site region 85261 | |
5830432F11Rik | 9 | 1051 | unclassified gene | RIKEN cDNA 5830432F11 gene | ||
Tssr85262 | 9 | 18 | + | TSS region | transcription start site region 85262 | |
Spcq2 | 9 | 0 | QTL | sperm count QTL 2 | ||
Gm47175 | 9 | 1836 | - | unclassified gene | predicted gene, 47175 | |
Tssr89712 | 9 | 7 | - | TSS region | transcription start site region 89712 | |
Gm47176 | 9 | 327 | + | lincRNA gene | predicted gene, 47176 | |
Gm47178 | 9 | 341 | + | pseudogene | predicted gene, 47178 | |
Tssr89713 | 9 | 8 | - | TSS region | transcription start site region 89713 | |
Gm31529 | 9 | 6700 | - | lncRNA gene | predicted gene, 31529 | |
Gm26868 | 9 | 7780 | + | lincRNA gene | predicted gene, 26868 | |
Lingo1 | 9 | 177993 | - | protein coding gene | leucine rich repeat and Ig domain containing 1 | |
Cpgi21796 | 9 | 1816 | CpG island | CpG island 21796 | ||
Tssr89714 | 9 | 12 | - | TSS region | transcription start site region 89714 | |
Tssr89715 | 9 | 9 | - | TSS region | transcription start site region 89715 | |
Tssr89716 | 9 | 15 | - | TSS region | transcription start site region 89716 | |
Tssr89717 | 9 | 11 | - | TSS region | transcription start site region 89717 | |
Tssr89718 | 9 | 11 | - | TSS region | transcription start site region 89718 | |
Tssr89719 | 9 | 9 | - | TSS region | transcription start site region 89719 | |
Cpgi21797 | 9 | 1711 | CpG island | CpG island 21797 | ||
Tssr89720 | 9 | 37 | - | TSS region | transcription start site region 89720 | |
Tssr89721 | 9 | 15 | - | TSS region | transcription start site region 89721 | |
Tssr89722 | 9 | 67 | - | TSS region | transcription start site region 89722 | |
Tssr89723 | 9 | 20 | - | TSS region | transcription start site region 89723 | |
Tssr89724 | 9 | 20 | - | TSS region | transcription start site region 89724 | |
Tssr89725 | 9 | 13 | - | TSS region | transcription start site region 89725 | |
Tssr89726 | 9 | 15 | - | TSS region | transcription start site region 89726 | |
Tssr89727 | 9 | 6 | - | TSS region | transcription start site region 89727 | |
Tssr89728 | 9 | 5 | - | TSS region | transcription start site region 89728 | |
Tssr89729 | 9 | 7 | - | TSS region | transcription start site region 89729 | |
Tssr89730 | 9 | 5 | - | TSS region | transcription start site region 89730 | |
Tssr89731 | 9 | 13 | - | TSS region | transcription start site region 89731 | |
Tssr89732 | 9 | 17 | - | TSS region | transcription start site region 89732 | |
Cpgi21798 | 9 | 485 | CpG island | CpG island 21798 | ||
Gm31642 | 9 | 7277 | + | lncRNA gene | predicted gene, 31642 | |
Cpgi21799 | 9 | 2077 | CpG island | CpG island 21799 | ||
Tssr89733 | 9 | 58 | - | TSS region | transcription start site region 89733 | |
Tssr89734 | 9 | 23 | - | TSS region | transcription start site region 89734 | |
Tssr89735 | 9 | 49 | - | TSS region | transcription start site region 89735 | |
Tssr89736 | 9 | 83 | - | TSS region | transcription start site region 89736 | |
Gm31586 | 9 | 1449 | + | lncRNA gene | predicted gene, 31586 | |
Gm47235 | 9 | 2299 | - | lincRNA gene | predicted gene, 47235 | |
Cpgi21800 | 9 | 302 | CpG island | CpG island 21800 | ||
Odf3l1 | 9 | 11854 | - | protein coding gene | outer dense fiber of sperm tails 3-like 1 | |
Tssr89737 | 9 | 73 | - | TSS region | transcription start site region 89737 | |
Tssr89738 | 9 | 4 | - | TSS region | transcription start site region 89738 | |
Tssr89739 | 9 | 3 | - | TSS region | transcription start site region 89739 | |
Tssr89740 | 9 | 32 | - | TSS region | transcription start site region 89740 | |
Cpgi21801 | 9 | 306 | CpG island | CpG island 21801 | ||
Tssr85263 | 9 | 29 | + | TSS region | transcription start site region 85263 | |
Tssr85264 | 9 | 21 | + | TSS region | transcription start site region 85264 | |
Tssr85265 | 9 | 11 | + | TSS region | transcription start site region 85265 | |
Tssr85266 | 9 | 3 | + | TSS region | transcription start site region 85266 | |
Cspg4 | 9 | 34766 | + | protein coding gene | chondroitin sulfate proteoglycan 4 | |
Tssr85267 | 9 | 8 | + | TSS region | transcription start site region 85267 | |
Tssr89741 | 9 | 10 | - | TSS region | transcription start site region 89741 | |
Cpgi21802 | 9 | 385 | CpG island | CpG island 21802 | ||
D9Mit301 | 9 | 119 | DNA segment | DNA Segment, Chr 9, Massachusetts Institute of Technology 301 | ||
Gm47237 | 9 | 1535 | + | lincRNA gene | predicted gene, 47237 | |
Snx33 | 9 | 11178 | - | protein coding gene | sorting nexin 33 | |
Tssr89742 | 9 | 14 | - | TSS region | transcription start site region 89742 | |
Tssr89743 | 9 | 6 | - | TSS region | transcription start site region 89743 | |
Tssr89744 | 9 | 4 | - | TSS region | transcription start site region 89744 | |
Tssr89745 | 9 | 13 | - | TSS region | transcription start site region 89745 | |
Cpgi21803 | 9 | 1205 | CpG island | CpG island 21803 | ||
Tssr89746 | 9 | 23 | - | TSS region | transcription start site region 89746 | |
Tssr89747 | 9 | 66 | - | TSS region | transcription start site region 89747 | |
Tssr89748 | 9 | 22 | - | TSS region | transcription start site region 89748 | |
Tssr89749 | 9 | 19 | - | TSS region | transcription start site region 89749 | |
Tssr89750 | 9 | 42 | - | TSS region | transcription start site region 89750 | |
4930442G15Rik | 9 | 1914 | + | lincRNA gene | RIKEN cDNA 4930442G15 gene | |
Gm19936 | 9 | 837 | - | pseudogene | predicted gene, 19936 | |
Cpgi21804 | 9 | 824 | CpG island | CpG island 21804 | ||
Tssr85268 | 9 | 40 | + | TSS region | transcription start site region 85268 | |
Imp3 | 9 | 898 | + | protein coding gene | IMP3, U3 small nucleolar ribonucleoprotein | |
Tssr85269 | 9 | 28 | + | TSS region | transcription start site region 85269 | |
Cpgi21805 | 9 | 762 | CpG island | CpG island 21805 | ||
Tssr89751 | 9 | 20 | - | TSS region | transcription start site region 89751 | |
Tssr85270 | 9 | 33 | + | TSS region | transcription start site region 85270 | |
Snupn | 9 | 32282 | + | protein coding gene | snurportin 1 | |
Tssr85271 | 9 | 9 | + | TSS region | transcription start site region 85271 | |
Tssr85272 | 9 | 4 | + | TSS region | transcription start site region 85272 | |
B930032C10Rik | 9 | 864 | unclassified gene | RIKEN cDNA B930032C10 gene | ||
Tssr85273 | 9 | 43 | + | TSS region | transcription start site region 85273 | |
Cpgi21806 | 9 | 1490 | CpG island | CpG island 21806 | ||
Tssr85274 | 9 | 11 | + | TSS region | transcription start site region 85274 | |
Tssr85275 | 9 | 29 | + | TSS region | transcription start site region 85275 | |
Tssr85276 | 9 | 54 | + | TSS region | transcription start site region 85276 | |
Ptpn9 | 9 | 67840 | + | protein coding gene | protein tyrosine phosphatase, non-receptor type 9 | |
Tssr85277 | 9 | 40 | + | TSS region | transcription start site region 85277 | |
Tssr85278 | 9 | 13 | + | TSS region | transcription start site region 85278 | |
Tssr85279 | 9 | 86 | + | TSS region | transcription start site region 85279 | |
Tssr85280 | 9 | 22 | + | TSS region | transcription start site region 85280 | |
Tssr85281 | 9 | 4 | + | TSS region | transcription start site region 85281 | |
Gm10658 | 9 | 15069 | - | antisense lncRNA gene | predicted gene 10658 | |
Tssr89752 | 9 | 12 | - | TSS region | transcription start site region 89752 | |
Tssr89753 | 9 | 26 | - | TSS region | transcription start site region 89753 | |
Cpgi21807 | 9 | 2274 | CpG island | CpG island 21807 | ||
Tssr85282 | 9 | 24 | + | TSS region | transcription start site region 85282 | |
Sin3a | 9 | 56326 | + | protein coding gene | transcriptional regulator, SIN3A (yeast) | |
Tssr85283 | 9 | 11 | + | TSS region | transcription start site region 85283 | |
Tssr85284 | 9 | 19 | + | TSS region | transcription start site region 85284 | |
Tssr85285 | 9 | 14 | + | TSS region | transcription start site region 85285 |