Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 9:55543210-56053828

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29 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Isl2 9 55538672 to 55546180 7508 + protein coding gene insulin related protein 2 (islet 2)
Cpgi21789 9 55543759 to 55544519 760 CpG island CpG island 21789
Cpgi21790 9 55544966 to 55546753 1787 CpG island CpG island 21790
Scaper 9 55549879 to 55938119 388240 - protein coding gene S phase cyclin A-associated protein in the ER
Gm23407 9 55555622 to 55555712 90 - snRNA gene predicted gene, 23407
Tssr89683 9 55590090 to 55590092 2 - TSS region transcription start site region 89683
Gm18102 9 55624648 to 55625267 619 + pseudogene predicted gene, 18102
Gm39342 9 55707190 to 55712568 5378 - lncRNA gene predicted gene, 39342
8430427G23Rik 9 55798210 to 55798828 618 unclassified gene RIKEN cDNA 8430427G23 gene
Gm46114 9 55804599 to 55806131 1532 + pseudogene predicted gene, 46114
1110019B24Rik 9 55898956 to 55900005 1049 unclassified gene RIKEN cDNA 1110019B24 gene
Cpgi21791 9 55937701 to 55938450 749 CpG island CpG island 21791
Tssr89684 9 55938093 to 55938143 50 - TSS region transcription start site region 89684
Tssr89685 9 55938174 to 55938202 28 - TSS region transcription start site region 89685
Tssr85222 9 55938222 to 55938264 42 + TSS region transcription start site region 85222
Tssr85223 9 55938265 to 55938296 31 + TSS region transcription start site region 85223
Tssr85224 9 55948176 to 55948185 9 + TSS region transcription start site region 85224
Gm7435 9 55949954 to 55952420 2466 + pseudogene predicted gene 7435
4930563M21Rik 9 55962589 to 56010550 47961 - protein coding gene RIKEN cDNA 4930563M21 gene
Gm7439 9 56021340 to 56022174 834 + pseudogene predicted gene 7439
Tssr89686 9 56027430 to 56027449 19 - TSS region transcription start site region 89686
Tssr85225 9 56027484 to 56027508 24 + TSS region transcription start site region 85225
Tssr85226 9 56027514 to 56027532 18 + TSS region transcription start site region 85226
Gm7444 9 56027742 to 56030169 2427 + pseudogene predicted gene 7444
Cpgi21792 9 56041709 to 56042542 833 CpG island CpG island 21792
Rcn2 9 56041845 to 56059083 17238 + protein coding gene reticulocalbin 2
Tssr85227 9 56041862 to 56041880 18 + TSS region transcription start site region 85227
Tssr85228 9 56042011 to 56042033 22 + TSS region transcription start site region 85228
Tssr85229 9 56052901 to 56052904 3 + TSS region transcription start site region 85229