Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 9:55478210-56118828

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58 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Etfa 9 55454508 to 55512243 57735 - protein coding gene electron transferring flavoprotein, alpha polypeptide
Tssr89680 9 55478872 to 55478878 6 - TSS region transcription start site region 89680
Cpgi21785 9 55511543 to 55512579 1036 CpG island CpG island 21785
Tssr89681 9 55512156 to 55512230 74 - TSS region transcription start site region 89681
Gm5917 9 55518569 to 55519289 720 + pseudogene predicted gene 5917
Isl2 9 55538672 to 55546180 7508 + protein coding gene insulin related protein 2 (islet 2)
Gm17226 9 55539549 to 55540888 1339 - antisense lncRNA gene predicted gene 17226
Cpgi21786 9 55539652 to 55540024 372 CpG island CpG island 21786
Cpgi21787 9 55540673 to 55541286 613 CpG island CpG island 21787
Tssr89682 9 55540893 to 55540925 32 - TSS region transcription start site region 89682
Tssr85221 9 55541190 to 55541209 19 + TSS region transcription start site region 85221
Cpgi21788 9 55541629 to 55543168 1539 CpG island CpG island 21788
Cpgi21789 9 55543759 to 55544519 760 CpG island CpG island 21789
Cpgi21790 9 55544966 to 55546753 1787 CpG island CpG island 21790
Scaper 9 55549879 to 55938119 388240 - protein coding gene S phase cyclin A-associated protein in the ER
Gm23407 9 55555622 to 55555712 90 - snRNA gene predicted gene, 23407
Tssr89683 9 55590090 to 55590092 2 - TSS region transcription start site region 89683
Gm18102 9 55624648 to 55625267 619 + pseudogene predicted gene, 18102
Gm39342 9 55707190 to 55712568 5378 - lncRNA gene predicted gene, 39342
8430427G23Rik 9 55798210 to 55798828 618 unclassified gene RIKEN cDNA 8430427G23 gene
Gm46114 9 55804599 to 55806131 1532 + pseudogene predicted gene, 46114
1110019B24Rik 9 55898956 to 55900005 1049 unclassified gene RIKEN cDNA 1110019B24 gene
Cpgi21791 9 55937701 to 55938450 749 CpG island CpG island 21791
Tssr89684 9 55938093 to 55938143 50 - TSS region transcription start site region 89684
Tssr89685 9 55938174 to 55938202 28 - TSS region transcription start site region 89685
Tssr85222 9 55938222 to 55938264 42 + TSS region transcription start site region 85222
Tssr85223 9 55938265 to 55938296 31 + TSS region transcription start site region 85223
Tssr85224 9 55948176 to 55948185 9 + TSS region transcription start site region 85224
Gm7435 9 55949954 to 55952420 2466 + pseudogene predicted gene 7435
4930563M21Rik 9 55962589 to 56010550 47961 - protein coding gene RIKEN cDNA 4930563M21 gene
Gm7439 9 56021340 to 56022174 834 + pseudogene predicted gene 7439
Tssr89686 9 56027430 to 56027449 19 - TSS region transcription start site region 89686
Tssr85225 9 56027484 to 56027508 24 + TSS region transcription start site region 85225
Tssr85226 9 56027514 to 56027532 18 + TSS region transcription start site region 85226
Gm7444 9 56027742 to 56030169 2427 + pseudogene predicted gene 7444
Cpgi21792 9 56041709 to 56042542 833 CpG island CpG island 21792
Rcn2 9 56041845 to 56059083 17238 + protein coding gene reticulocalbin 2
Tssr85227 9 56041862 to 56041880 18 + TSS region transcription start site region 85227
Tssr85228 9 56042011 to 56042033 22 + TSS region transcription start site region 85228
Tssr85229 9 56052901 to 56052904 3 + TSS region transcription start site region 85229
Tssr85230 9 56057497 to 56057537 40 + TSS region transcription start site region 85230
Gm31261 9 56074438 to 56077554 3116 - lncRNA gene predicted gene, 31261
Tssr85231 9 56089937 to 56089949 12 + TSS region transcription start site region 85231
Pstpip1 9 56089962 to 56128888 38926 + protein coding gene proline-serine-threonine phosphatase-interacting protein 1
Tssr85232 9 56089966 to 56089987 21 + TSS region transcription start site region 85232
Tssr85233 9 56089988 to 56090007 19 + TSS region transcription start site region 85233
Tssr85234 9 56090015 to 56090060 45 + TSS region transcription start site region 85234
Tssr85235 9 56090075 to 56090089 14 + TSS region transcription start site region 85235
Tssr2880 9 56090098 to 56090103 5 + TSS region transcription start site region 2880
Tssr85236 9 56090169 to 56090184 15 + TSS region transcription start site region 85236
Tssr85237 9 56090210 to 56090238 28 + TSS region transcription start site region 85237
Tssr85238 9 56090342 to 56090358 16 + TSS region transcription start site region 85238
Tssr85239 9 56090373 to 56090399 26 + TSS region transcription start site region 85239
Tssr85240 9 56095552 to 56095583 31 + TSS region transcription start site region 85240
Tssr85241 9 56101532 to 56101543 11 + TSS region transcription start site region 85241
Tssr85242 9 56112135 to 56112148 13 + TSS region transcription start site region 85242
Tssr85243 9 56114083 to 56114119 36 + TSS region transcription start site region 85243
Tssr85244 9 56114666 to 56114677 11 + TSS region transcription start site region 85244