Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 9:55289648-55960267

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46 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Tssr89676 9 55292137 to 55292144 7 - TSS region transcription start site region 89676
Gm15625 9 55305288 to 55306380 1092 + pseudogene predicted gene 15625
Tssr85213 9 55310621 to 55310622 1 + TSS region transcription start site region 85213
Cpgi21783 9 55326383 to 55327607 1224 CpG island CpG island 21783
Tmem266 9 55326919 to 55438345 111426 + protein coding gene transmembrane protein 266
Tssr85214 9 55326937 to 55326958 21 + TSS region transcription start site region 85214
Tssr85215 9 55326959 to 55326980 21 + TSS region transcription start site region 85215
Tssr85216 9 55396435 to 55396436 1 + TSS region transcription start site region 85216
Tssr89677 9 55410559 to 55410563 4 - TSS region transcription start site region 89677
Tssr89678 9 55411251 to 55411278 27 - TSS region transcription start site region 89678
Cpgi21784 9 55430237 to 55430507 270 CpG island CpG island 21784
Tssr85217 9 55430265 to 55430277 12 + TSS region transcription start site region 85217
Tssr85218 9 55430345 to 55430364 19 + TSS region transcription start site region 85218
Tssr85219 9 55430388 to 55430402 14 + TSS region transcription start site region 85219
Tssr85220 9 55430404 to 55430428 24 + TSS region transcription start site region 85220
Etfa 9 55454508 to 55512243 57735 - protein coding gene electron transferring flavoprotein, alpha polypeptide
9430072B17Rik 9 55455133 to 55458118 2985 unclassified gene RIKEN cDNA 9430072B17 gene
Tssr89679 9 55470300 to 55470303 3 - TSS region transcription start site region 89679
Tssr89680 9 55478872 to 55478878 6 - TSS region transcription start site region 89680
Cpgi21785 9 55511543 to 55512579 1036 CpG island CpG island 21785
Tssr89681 9 55512156 to 55512230 74 - TSS region transcription start site region 89681
Gm5917 9 55518569 to 55519289 720 + pseudogene predicted gene 5917
Isl2 9 55538672 to 55546180 7508 + protein coding gene insulin related protein 2 (islet 2)
Gm17226 9 55539549 to 55540888 1339 - antisense lncRNA gene predicted gene 17226
Cpgi21786 9 55539652 to 55540024 372 CpG island CpG island 21786
Cpgi21787 9 55540673 to 55541286 613 CpG island CpG island 21787
Tssr89682 9 55540893 to 55540925 32 - TSS region transcription start site region 89682
Tssr85221 9 55541190 to 55541209 19 + TSS region transcription start site region 85221
Cpgi21788 9 55541629 to 55543168 1539 CpG island CpG island 21788
Cpgi21789 9 55543759 to 55544519 760 CpG island CpG island 21789
Cpgi21790 9 55544966 to 55546753 1787 CpG island CpG island 21790
Scaper 9 55549879 to 55938119 388240 - protein coding gene S phase cyclin A-associated protein in the ER
Gm23407 9 55555622 to 55555712 90 - snRNA gene predicted gene, 23407
Tssr89683 9 55590090 to 55590092 2 - TSS region transcription start site region 89683
Gm18102 9 55624648 to 55625267 619 + pseudogene predicted gene, 18102
Gm39342 9 55707190 to 55712568 5378 - lncRNA gene predicted gene, 39342
8430427G23Rik 9 55798210 to 55798828 618 unclassified gene RIKEN cDNA 8430427G23 gene
Gm46114 9 55804599 to 55806131 1532 + pseudogene predicted gene, 46114
1110019B24Rik 9 55898956 to 55900005 1049 unclassified gene RIKEN cDNA 1110019B24 gene
Cpgi21791 9 55937701 to 55938450 749 CpG island CpG island 21791
Tssr89684 9 55938093 to 55938143 50 - TSS region transcription start site region 89684
Tssr89685 9 55938174 to 55938202 28 - TSS region transcription start site region 89685
Tssr85222 9 55938222 to 55938264 42 + TSS region transcription start site region 85222
Tssr85223 9 55938265 to 55938296 31 + TSS region transcription start site region 85223
Tssr85224 9 55948176 to 55948185 9 + TSS region transcription start site region 85224
Gm7435 9 55949954 to 55952420 2466 + pseudogene predicted gene 7435