Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 9:54984300-55314312

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58 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Chrna5 9 54980880 to 55007779 26899 + protein coding gene cholinergic receptor, nicotinic, alpha polypeptide 5
Chrna3 9 55011343 to 55026559 15216 - protein coding gene cholinergic receptor, nicotinic, alpha polypeptide 3
Cpgi21777 9 55015534 to 55015977 443 CpG island CpG island 21777
Cpgi21778 9 55025646 to 55026809 1163 CpG island CpG island 21778
Tssr89662 9 55026458 to 55026486 28 - TSS region transcription start site region 89662
Tssr89663 9 55026509 to 55026523 14 - TSS region transcription start site region 89663
Tssr89664 9 55026524 to 55026539 15 - TSS region transcription start site region 89664
Tssr89665 9 55026541 to 55026599 58 - TSS region transcription start site region 89665
Tssr89666 9 55026618 to 55026657 39 - TSS region transcription start site region 89666
Chrnb4 9 55028154 to 55048779 20625 - protein coding gene cholinergic receptor, nicotinic, beta polypeptide 4
Gm47877 9 55030783 to 55039429 8646 + antisense lncRNA gene predicted gene, 47877
D9Ucl1 9 55036616 to 55036818 202 DNA segment DNA segment, Chr 9, University College London 1
Tssr89667 9 55044000 to 55044017 17 - TSS region transcription start site region 89667
Cpgi21779 9 55048377 to 55048755 378 CpG island CpG island 21779
Tssr89668 9 55048561 to 55048593 32 - TSS region transcription start site region 89668
Tssr89669 9 55048748 to 55048792 44 - TSS region transcription start site region 89669
Gm47886 9 55054804 to 55055238 434 + pseudogene predicted gene, 47886
Gm47887 9 55064927 to 55067463 2536 - lincRNA gene predicted gene, 47887
Gm7395 9 55094329 to 55095370 1041 - pseudogene predicted gene 7395
D9Ertd496e 9 55116164 to 55116378 214 DNA segment DNA segment, Chr 9, ERATO Doi 496, expressed
D9Mit312 9 55129586 to 55129691 105 DNA segment DNA Segment, Chr 9, Massachusetts Institute of Technology 312
1700071A11Rik 9 55148480 to 55149398 918 unclassified gene RIKEN cDNA 1700071A11 gene
Cpgi21780 9 55148739 to 55150475 1736 CpG island CpG island 21780
Ube2q2 9 55148854 to 55207529 58675 + protein coding gene ubiquitin-conjugating enzyme E2Q family member 2
Tssr85198 9 55149300 to 55149312 12 + TSS region transcription start site region 85198
Tssr85199 9 55149364 to 55149395 31 + TSS region transcription start site region 85199
Tssr85200 9 55149413 to 55149432 19 + TSS region transcription start site region 85200
Tssr85201 9 55149434 to 55149448 14 + TSS region transcription start site region 85201
Tssr85202 9 55149453 to 55149469 16 + TSS region transcription start site region 85202
Tssr85203 9 55149603 to 55149606 3 + TSS region transcription start site region 85203
Tssr85204 9 55149621 to 55149630 9 + TSS region transcription start site region 85204
Tssr89670 9 55149969 to 55150016 47 - TSS region transcription start site region 89670
Tssr85205 9 55150050 to 55150083 33 + TSS region transcription start site region 85205
Pcho9 9 55192291 to 55192291 0 QTL plasma cholesterol 9
Arlsq1 9 55192291 to 55192291 0 QTL aortic root lesion size QTL 1
Arlsq2 9 55192291 to 55192291 0 QTL aortic root lesion size QTL 2
Tssr85206 9 55201583 to 55201589 6 + TSS region transcription start site region 85206
D9Wsu74e 9 55204728 to 55204976 248 DNA segment DNA segment, Chr 9, Wayne State University 74, expressed
Tssr89671 9 55204994 to 55204996 2 - TSS region transcription start site region 89671
Cpgi21781 9 55208526 to 55209646 1120 CpG island CpG island 21781
Fbxo22 9 55208935 to 55224433 15498 + protein coding gene F-box protein 22
Tssr85207 9 55208940 to 55208989 49 + TSS region transcription start site region 85207
Tssr85208 9 55209005 to 55209020 15 + TSS region transcription start site region 85208
Tssr2878 9 55209029 to 55209032 3 + TSS region transcription start site region 2878
Tssr85209 9 55209269 to 55209297 28 + TSS region transcription start site region 85209
Tssr85210 9 55213853 to 55213866 13 + TSS region transcription start site region 85210
Tssr85211 9 55213900 to 55213911 11 + TSS region transcription start site region 85211
Tssr85212 9 55216405 to 55216416 11 + TSS region transcription start site region 85212
Nrg4 9 55220222 to 55283649 63427 - protein coding gene neuregulin 4
Cpgi21782 9 55242174 to 55242333 159 CpG island CpG island 21782
Tssr2879 9 55242494 to 55242510 16 - TSS region transcription start site region 2879
Tssr89672 9 55283566 to 55283580 14 - TSS region transcription start site region 89672
Tssr89673 9 55283582 to 55283630 48 - TSS region transcription start site region 89673
Tssr89674 9 55283650 to 55283660 10 - TSS region transcription start site region 89674
Tssr89675 9 55283661 to 55283672 11 - TSS region transcription start site region 89675
Tssr89676 9 55292137 to 55292144 7 - TSS region transcription start site region 89676
Gm15625 9 55305288 to 55306380 1092 + pseudogene predicted gene 15625
Tssr85213 9 55310621 to 55310622 1 + TSS region transcription start site region 85213