Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 9:54945475-58775507

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738 genes found. Result truncated to 200 rows.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Fecq4 9 47631726 to 57897921 10266195 QTL fecundity QTL 4
repro46 9 50753738 to 56901655 6147917 heritable phenotypic marker reproductive mutant 46, JAX Reproductive Mutagenesis Program
Hykk 9 54917290 to 54949924 32634 + protein coding gene hydroxylysine kinase 1
Tssr2877 9 54949349 to 54949358 9 + TSS region transcription start site region 2877
AY074887 9 54950244 to 54950954 710 - protein coding gene cDNA sequence AY074887
Cpgi21775 9 54950589 to 54951472 883 CpG island CpG island 21775
Tssr85192 9 54950782 to 54950797 15 + TSS region transcription start site region 85192
Tssr85193 9 54950808 to 54950820 12 + TSS region transcription start site region 85193
Psma4 9 54950816 to 54958032 7216 + protein coding gene proteasome (prosome, macropain) subunit, alpha type 4
Tssr85194 9 54950838 to 54950852 14 + TSS region transcription start site region 85194
Tssr85195 9 54951104 to 54951126 22 + TSS region transcription start site region 85195
Tssr85196 9 54956846 to 54956851 5 + TSS region transcription start site region 85196
Chrna5 9 54980880 to 55007779 26899 + protein coding gene cholinergic receptor, nicotinic, alpha polypeptide 5
Cpgi21776 9 54980898 to 54982257 1359 CpG island CpG island 21776
Tssr85197 9 54981482 to 54981496 14 + TSS region transcription start site region 85197
Chrna3 9 55011343 to 55026559 15216 - protein coding gene cholinergic receptor, nicotinic, alpha polypeptide 3
Cpgi21777 9 55015534 to 55015977 443 CpG island CpG island 21777
Cpgi21778 9 55025646 to 55026809 1163 CpG island CpG island 21778
Tssr89662 9 55026458 to 55026486 28 - TSS region transcription start site region 89662
Tssr89663 9 55026509 to 55026523 14 - TSS region transcription start site region 89663
Tssr89664 9 55026524 to 55026539 15 - TSS region transcription start site region 89664
Tssr89665 9 55026541 to 55026599 58 - TSS region transcription start site region 89665
Tssr89666 9 55026618 to 55026657 39 - TSS region transcription start site region 89666
Chrnb4 9 55028154 to 55048779 20625 - protein coding gene cholinergic receptor, nicotinic, beta polypeptide 4
Gm47877 9 55030783 to 55039429 8646 + antisense lncRNA gene predicted gene, 47877
D9Ucl1 9 55036616 to 55036818 202 DNA segment DNA segment, Chr 9, University College London 1
Tssr89667 9 55044000 to 55044017 17 - TSS region transcription start site region 89667
Cpgi21779 9 55048377 to 55048755 378 CpG island CpG island 21779
Tssr89668 9 55048561 to 55048593 32 - TSS region transcription start site region 89668
Tssr89669 9 55048748 to 55048792 44 - TSS region transcription start site region 89669
Gm47886 9 55054804 to 55055238 434 + pseudogene predicted gene, 47886
Gm47887 9 55064927 to 55067463 2536 - lincRNA gene predicted gene, 47887
Gm7395 9 55094329 to 55095370 1041 - pseudogene predicted gene 7395
D9Ertd496e 9 55116164 to 55116378 214 DNA segment DNA segment, Chr 9, ERATO Doi 496, expressed
D9Mit312 9 55129586 to 55129691 105 DNA segment DNA Segment, Chr 9, Massachusetts Institute of Technology 312
1700071A11Rik 9 55148480 to 55149398 918 unclassified gene RIKEN cDNA 1700071A11 gene
Cpgi21780 9 55148739 to 55150475 1736 CpG island CpG island 21780
Ube2q2 9 55148854 to 55207529 58675 + protein coding gene ubiquitin-conjugating enzyme E2Q family member 2
Tssr85198 9 55149300 to 55149312 12 + TSS region transcription start site region 85198
Tssr85199 9 55149364 to 55149395 31 + TSS region transcription start site region 85199
Tssr85200 9 55149413 to 55149432 19 + TSS region transcription start site region 85200
Tssr85201 9 55149434 to 55149448 14 + TSS region transcription start site region 85201
Tssr85202 9 55149453 to 55149469 16 + TSS region transcription start site region 85202
Tssr85203 9 55149603 to 55149606 3 + TSS region transcription start site region 85203
Tssr85204 9 55149621 to 55149630 9 + TSS region transcription start site region 85204
Tssr89670 9 55149969 to 55150016 47 - TSS region transcription start site region 89670
Tssr85205 9 55150050 to 55150083 33 + TSS region transcription start site region 85205
Pcho9 9 55192291 to 55192291 0 QTL plasma cholesterol 9
Arlsq1 9 55192291 to 55192291 0 QTL aortic root lesion size QTL 1
Arlsq2 9 55192291 to 55192291 0 QTL aortic root lesion size QTL 2
Tssr85206 9 55201583 to 55201589 6 + TSS region transcription start site region 85206
D9Wsu74e 9 55204728 to 55204976 248 DNA segment DNA segment, Chr 9, Wayne State University 74, expressed
Tssr89671 9 55204994 to 55204996 2 - TSS region transcription start site region 89671
Cpgi21781 9 55208526 to 55209646 1120 CpG island CpG island 21781
Fbxo22 9 55208935 to 55224433 15498 + protein coding gene F-box protein 22
Tssr85207 9 55208940 to 55208989 49 + TSS region transcription start site region 85207
Tssr85208 9 55209005 to 55209020 15 + TSS region transcription start site region 85208
Tssr2878 9 55209029 to 55209032 3 + TSS region transcription start site region 2878
Tssr85209 9 55209269 to 55209297 28 + TSS region transcription start site region 85209
Tssr85210 9 55213853 to 55213866 13 + TSS region transcription start site region 85210
Tssr85211 9 55213900 to 55213911 11 + TSS region transcription start site region 85211
Tssr85212 9 55216405 to 55216416 11 + TSS region transcription start site region 85212
Nrg4 9 55220222 to 55283649 63427 - protein coding gene neuregulin 4
Cpgi21782 9 55242174 to 55242333 159 CpG island CpG island 21782
Tssr2879 9 55242494 to 55242510 16 - TSS region transcription start site region 2879
Tssr89672 9 55283566 to 55283580 14 - TSS region transcription start site region 89672
Tssr89673 9 55283582 to 55283630 48 - TSS region transcription start site region 89673
Tssr89674 9 55283650 to 55283660 10 - TSS region transcription start site region 89674
Tssr89675 9 55283661 to 55283672 11 - TSS region transcription start site region 89675
Tssr89676 9 55292137 to 55292144 7 - TSS region transcription start site region 89676
Gm15625 9 55305288 to 55306380 1092 + pseudogene predicted gene 15625
Tssr85213 9 55310621 to 55310622 1 + TSS region transcription start site region 85213
Cpgi21783 9 55326383 to 55327607 1224 CpG island CpG island 21783
Tmem266 9 55326919 to 55438345 111426 + protein coding gene transmembrane protein 266
Tssr85214 9 55326937 to 55326958 21 + TSS region transcription start site region 85214
Tssr85215 9 55326959 to 55326980 21 + TSS region transcription start site region 85215
Tssr85216 9 55396435 to 55396436 1 + TSS region transcription start site region 85216
Tssr89677 9 55410559 to 55410563 4 - TSS region transcription start site region 89677
Tssr89678 9 55411251 to 55411278 27 - TSS region transcription start site region 89678
Cpgi21784 9 55430237 to 55430507 270 CpG island CpG island 21784
Tssr85217 9 55430265 to 55430277 12 + TSS region transcription start site region 85217
Tssr85218 9 55430345 to 55430364 19 + TSS region transcription start site region 85218
Tssr85219 9 55430388 to 55430402 14 + TSS region transcription start site region 85219
Tssr85220 9 55430404 to 55430428 24 + TSS region transcription start site region 85220
Etfa 9 55454508 to 55512243 57735 - protein coding gene electron transferring flavoprotein, alpha polypeptide
9430072B17Rik 9 55455133 to 55458118 2985 unclassified gene RIKEN cDNA 9430072B17 gene
Tssr89679 9 55470300 to 55470303 3 - TSS region transcription start site region 89679
Tssr89680 9 55478872 to 55478878 6 - TSS region transcription start site region 89680
Cpgi21785 9 55511543 to 55512579 1036 CpG island CpG island 21785
Tssr89681 9 55512156 to 55512230 74 - TSS region transcription start site region 89681
Gm5917 9 55518569 to 55519289 720 + pseudogene predicted gene 5917
Isl2 9 55538672 to 55546180 7508 + protein coding gene insulin related protein 2 (islet 2)
Gm17226 9 55539549 to 55540888 1339 - antisense lncRNA gene predicted gene 17226
Cpgi21786 9 55539652 to 55540024 372 CpG island CpG island 21786
Cpgi21787 9 55540673 to 55541286 613 CpG island CpG island 21787
Tssr89682 9 55540893 to 55540925 32 - TSS region transcription start site region 89682
Tssr85221 9 55541190 to 55541209 19 + TSS region transcription start site region 85221
Cpgi21788 9 55541629 to 55543168 1539 CpG island CpG island 21788
Cpgi21789 9 55543759 to 55544519 760 CpG island CpG island 21789
Cpgi21790 9 55544966 to 55546753 1787 CpG island CpG island 21790
Scaper 9 55549879 to 55938119 388240 - protein coding gene S phase cyclin A-associated protein in the ER
Gm23407 9 55555622 to 55555712 90 - snRNA gene predicted gene, 23407
Tssr89683 9 55590090 to 55590092 2 - TSS region transcription start site region 89683
Gm18102 9 55624648 to 55625267 619 + pseudogene predicted gene, 18102
Gm39342 9 55707190 to 55712568 5378 - lncRNA gene predicted gene, 39342
8430427G23Rik 9 55798210 to 55798828 618 unclassified gene RIKEN cDNA 8430427G23 gene
Gm46114 9 55804599 to 55806131 1532 + pseudogene predicted gene, 46114
1110019B24Rik 9 55898956 to 55900005 1049 unclassified gene RIKEN cDNA 1110019B24 gene
Cpgi21791 9 55937701 to 55938450 749 CpG island CpG island 21791
Tssr89684 9 55938093 to 55938143 50 - TSS region transcription start site region 89684
Tssr89685 9 55938174 to 55938202 28 - TSS region transcription start site region 89685
Tssr85222 9 55938222 to 55938264 42 + TSS region transcription start site region 85222
Tssr85223 9 55938265 to 55938296 31 + TSS region transcription start site region 85223
Tssr85224 9 55948176 to 55948185 9 + TSS region transcription start site region 85224
Gm7435 9 55949954 to 55952420 2466 + pseudogene predicted gene 7435
4930563M21Rik 9 55962589 to 56010550 47961 - protein coding gene RIKEN cDNA 4930563M21 gene
Gm7439 9 56021340 to 56022174 834 + pseudogene predicted gene 7439
Tssr89686 9 56027430 to 56027449 19 - TSS region transcription start site region 89686
Tssr85225 9 56027484 to 56027508 24 + TSS region transcription start site region 85225
Tssr85226 9 56027514 to 56027532 18 + TSS region transcription start site region 85226
Gm7444 9 56027742 to 56030169 2427 + pseudogene predicted gene 7444
Cpgi21792 9 56041709 to 56042542 833 CpG island CpG island 21792
Rcn2 9 56041845 to 56059083 17238 + protein coding gene reticulocalbin 2
Tssr85227 9 56041862 to 56041880 18 + TSS region transcription start site region 85227
Tssr85228 9 56042011 to 56042033 22 + TSS region transcription start site region 85228
Tssr85229 9 56052901 to 56052904 3 + TSS region transcription start site region 85229
Tssr85230 9 56057497 to 56057537 40 + TSS region transcription start site region 85230
Gm31261 9 56074438 to 56077554 3116 - lncRNA gene predicted gene, 31261
Tssr85231 9 56089937 to 56089949 12 + TSS region transcription start site region 85231
Pstpip1 9 56089962 to 56128888 38926 + protein coding gene proline-serine-threonine phosphatase-interacting protein 1
Tssr85232 9 56089966 to 56089987 21 + TSS region transcription start site region 85232
Tssr85233 9 56089988 to 56090007 19 + TSS region transcription start site region 85233
Tssr85234 9 56090015 to 56090060 45 + TSS region transcription start site region 85234
Tssr85235 9 56090075 to 56090089 14 + TSS region transcription start site region 85235
Tssr2880 9 56090098 to 56090103 5 + TSS region transcription start site region 2880
Tssr85236 9 56090169 to 56090184 15 + TSS region transcription start site region 85236
Tssr85237 9 56090210 to 56090238 28 + TSS region transcription start site region 85237
Tssr85238 9 56090342 to 56090358 16 + TSS region transcription start site region 85238
Tssr85239 9 56090373 to 56090399 26 + TSS region transcription start site region 85239
Tssr85240 9 56095552 to 56095583 31 + TSS region transcription start site region 85240
Tssr85241 9 56101532 to 56101543 11 + TSS region transcription start site region 85241
Tssr85242 9 56112135 to 56112148 13 + TSS region transcription start site region 85242
Tssr85243 9 56114083 to 56114119 36 + TSS region transcription start site region 85243
Tssr85244 9 56114666 to 56114677 11 + TSS region transcription start site region 85244
Tssr85245 9 56119645 to 56119649 4 + TSS region transcription start site region 85245
Tssr85246 9 56120558 to 56120570 12 + TSS region transcription start site region 85246
Tssr85247 9 56123254 to 56123265 11 + TSS region transcription start site region 85247
Tssr85248 9 56123289 to 56123305 16 + TSS region transcription start site region 85248
Tspan3 9 56135884 to 56161070 25186 - protein coding gene tetraspanin 3
Tssr89687 9 56136137 to 56136153 16 - TSS region transcription start site region 89687
Tssr89688 9 56136245 to 56136286 41 - TSS region transcription start site region 89688
Tssr89689 9 56136350 to 56136360 10 - TSS region transcription start site region 89689
Tssr89690 9 56136371 to 56136390 19 - TSS region transcription start site region 89690
Tssr89691 9 56136460 to 56136517 57 - TSS region transcription start site region 89691
Tssr89692 9 56139384 to 56139385 1 - TSS region transcription start site region 89692
Tssr89693 9 56145276 to 56145284 8 - TSS region transcription start site region 89693
Tssr2881 9 56146119 to 56146120 1 + TSS region transcription start site region 2881
Tssr89694 9 56155862 to 56155864 2 - TSS region transcription start site region 89694
Tssr2882 9 56160179 to 56160183 4 + TSS region transcription start site region 2882
Cpgi21793 9 56160286 to 56161201 915 CpG island CpG island 21793
Tssr89695 9 56160940 to 56160968 28 - TSS region transcription start site region 89695
Tssr89696 9 56160998 to 56161045 47 - TSS region transcription start site region 89696
Tssr89697 9 56161051 to 56161075 24 - TSS region transcription start site region 89697
Tssr2883 9 56161092 to 56161097 5 - TSS region transcription start site region 2883
Tssr85249 9 56166443 to 56166453 10 + TSS region transcription start site region 85249
Peak1 9 56201126 to 56418067 216941 - protein coding gene pseudopodium-enriched atypical kinase 1
Tssr89698 9 56201708 to 56201712 4 - TSS region transcription start site region 89698
Tssr89699 9 56202103 to 56202114 11 - TSS region transcription start site region 89699
Cpgi21794 9 56223568 to 56224016 448 CpG island CpG island 21794
Gm24270 9 56223715 to 56223771 56 - miRNA gene predicted gene, 24270
Gm29322 9 56239285 to 56240751 1466 - sense intronic lncRNA gene predicted gene 29322
Tssr89700 9 56244035 to 56244047 12 - TSS region transcription start site region 89700
Tssr89701 9 56244050 to 56244099 49 - TSS region transcription start site region 89701
Tssr85250 9 56248867 to 56248873 6 + TSS region transcription start site region 85250
Tssr85251 9 56257479 to 56257517 38 + TSS region transcription start site region 85251
Peak1os 9 56257890 to 56267780 9890 + antisense lncRNA gene pseudopodium-enriched atypical kinase 1, opposite strand
Tssr89702 9 56259148 to 56259176 28 - TSS region transcription start site region 89702
Gm37842 9 56263599 to 56265167 1568 + unclassified gene predicted gene, 37842
Tssr89703 9 56266417 to 56266423 6 - TSS region transcription start site region 89703
D9Mit142 9 56290406 to 56290587 181 DNA segment DNA segment, Chr 9, Massachusetts Institute of Technology 142
Tssr89704 9 56324398 to 56324403 5 - TSS region transcription start site region 89704
Tssr89705 9 56360985 to 56361007 22 - TSS region transcription start site region 89705
Tssr89706 9 56382123 to 56382126 3 - TSS region transcription start site region 89706
Gm36940 9 56414031 to 56416066 2035 - unclassified gene predicted gene, 36940
Cpgi21795 9 56417338 to 56418832 1494 CpG island CpG island 21795
Tssr89707 9 56418023 to 56418052 29 - TSS region transcription start site region 89707
Tssr89708 9 56418061 to 56418081 20 - TSS region transcription start site region 89708
Tssr89709 9 56418099 to 56418110 11 - TSS region transcription start site region 89709
Tssr85252 9 56418387 to 56418399 12 + TSS region transcription start site region 85252
Tssr85253 9 56418415 to 56418425 10 + TSS region transcription start site region 85253
Tssr85254 9 56418624 to 56418681 57 + TSS region transcription start site region 85254
Hmg20a 9 56418628 to 56496936 78308 + protein coding gene high mobility group 20A
Tssr85255 9 56418697 to 56418709 12 + TSS region transcription start site region 85255
Tssr85256 9 56418805 to 56418847 42 + TSS region transcription start site region 85256
Tssr89710 9 56418835 to 56418846 11 - TSS region transcription start site region 89710
Tssr85257 9 56418867 to 56418874 7 + TSS region transcription start site region 85257
Tssr89711 9 56418928 to 56418963 35 - TSS region transcription start site region 89711
Tssr85258 9 56419485 to 56419489 4 + TSS region transcription start site region 85258
Tssr85259 9 56424416 to 56424419 3 + TSS region transcription start site region 85259
Tssr85260 9 56437422 to 56437431 9 + TSS region transcription start site region 85260