Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 9:54778789-54997530

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34 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Tssr85182 9 54801760 to 54801774 14 + TSS region transcription start site region 85182
Tssr85183 9 54801776 to 54801801 25 + TSS region transcription start site region 85183
Tssr89657 9 54802960 to 54802971 11 - TSS region transcription start site region 89657
Tssr89658 9 54803013 to 54803025 12 - TSS region transcription start site region 89658
Rab7-ps1 9 54824661 to 54825282 621 - pseudogene RAB7, member RAS oncogene family, pseudogene 1
Tssr89659 9 54824769 to 54824796 27 - TSS region transcription start site region 89659
Tssr89660 9 54824866 to 54824915 49 - TSS region transcription start site region 89660
Tssr89661 9 54850064 to 54850068 4 - TSS region transcription start site region 89661
Cpgi21773 9 54863354 to 54864372 1018 CpG island CpG island 21773
Tssr85184 9 54863680 to 54863711 31 + TSS region transcription start site region 85184
Tssr85185 9 54863720 to 54863740 20 + TSS region transcription start site region 85185
Tssr85186 9 54863742 to 54863801 59 + TSS region transcription start site region 85186
Ireb2 9 54863789 to 54912530 48741 + protein coding gene iron responsive element binding protein 2
Tssr85187 9 54863823 to 54863842 19 + TSS region transcription start site region 85187
Tssr85188 9 54863851 to 54863859 8 + TSS region transcription start site region 85188
Obq32 9 54912244 to 54912244 0 QTL obesity QTL 32
Cpgi21774 9 54917115 to 54917689 574 CpG island CpG island 21774
Tssr85189 9 54917252 to 54917295 43 + TSS region transcription start site region 85189
Hykk 9 54917290 to 54949924 32634 + protein coding gene hydroxylysine kinase 1
Tssr85190 9 54917298 to 54917328 30 + TSS region transcription start site region 85190
Tssr85191 9 54917330 to 54917339 9 + TSS region transcription start site region 85191
D9Mit100 9 54935506 to 54935640 134 DNA segment DNA segment, Chr 9, Massachusetts Institute of Technology 100
Tssr2877 9 54949349 to 54949358 9 + TSS region transcription start site region 2877
AY074887 9 54950244 to 54950954 710 - protein coding gene cDNA sequence AY074887
Cpgi21775 9 54950589 to 54951472 883 CpG island CpG island 21775
Tssr85192 9 54950782 to 54950797 15 + TSS region transcription start site region 85192
Tssr85193 9 54950808 to 54950820 12 + TSS region transcription start site region 85193
Psma4 9 54950816 to 54958032 7216 + protein coding gene proteasome (prosome, macropain) subunit, alpha type 4
Tssr85194 9 54950838 to 54950852 14 + TSS region transcription start site region 85194
Tssr85195 9 54951104 to 54951126 22 + TSS region transcription start site region 85195
Tssr85196 9 54956846 to 54956851 5 + TSS region transcription start site region 85196
Chrna5 9 54980880 to 55007779 26899 + protein coding gene cholinergic receptor, nicotinic, alpha polypeptide 5
Cpgi21776 9 54980898 to 54982257 1359 CpG island CpG island 21776
Tssr85197 9 54981482 to 54981496 14 + TSS region transcription start site region 85197