Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 9:54678823-55048842

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78 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Gm7368 9 54691136 to 54691502 366 - pseudogene predicted gene 7368
Cpgi21769 9 54691354 to 54691849 495 CpG island CpG island 21769
Gm46113 9 54696645 to 54698464 1819 - lncRNA gene predicted gene, 46113
Cpgi21770 9 54698813 to 54700329 1516 CpG island CpG island 21770
Tssr85165 9 54698859 to 54698884 25 + TSS region transcription start site region 85165
Dnaja4 9 54698883 to 54716317 17434 + protein coding gene DnaJ heat shock protein family (Hsp40) member A4
Tssr85166 9 54698890 to 54698896 6 + TSS region transcription start site region 85166
Tssr85167 9 54698900 to 54698907 7 + TSS region transcription start site region 85167
Tssr85168 9 54698921 to 54698927 6 + TSS region transcription start site region 85168
Tssr85169 9 54699126 to 54699140 14 + TSS region transcription start site region 85169
Tssr85170 9 54699518 to 54699525 7 + TSS region transcription start site region 85170
Tssr85171 9 54699548 to 54699565 17 + TSS region transcription start site region 85171
Mir5710 9 54708313 to 54708381 68 + miRNA gene microRNA 5710
Wdr61 9 54717153 to 54734549 17396 - protein coding gene WD repeat domain 61
Cpgi21771 9 54734276 to 54734708 432 CpG island CpG island 21771
Tssr89656 9 54734468 to 54734523 55 - TSS region transcription start site region 89656
Cpgi21772 9 54764534 to 54766153 1619 CpG island CpG island 21772
Tssr85172 9 54764557 to 54764583 26 + TSS region transcription start site region 85172
Crabp1 9 54764748 to 54773110 8362 + protein coding gene cellular retinoic acid binding protein I
Tssr85173 9 54764794 to 54764813 19 + TSS region transcription start site region 85173
Tssr85174 9 54765552 to 54765564 12 + TSS region transcription start site region 85174
Tssr85175 9 54765629 to 54765640 11 + TSS region transcription start site region 85175
Tssr85176 9 54768441 to 54768451 10 + TSS region transcription start site region 85176
Tssr85177 9 54772868 to 54772877 9 + TSS region transcription start site region 85177
Tssr85178 9 54772879 to 54772886 7 + TSS region transcription start site region 85178
Tssr85179 9 54772888 to 54772894 6 + TSS region transcription start site region 85179
Tssr85180 9 54772909 to 54772917 8 + TSS region transcription start site region 85180
Tssr2876 9 54772931 to 54772943 12 + TSS region transcription start site region 2876
Tssr85181 9 54772953 to 54772968 15 + TSS region transcription start site region 85181
Tssr85182 9 54801760 to 54801774 14 + TSS region transcription start site region 85182
Tssr85183 9 54801776 to 54801801 25 + TSS region transcription start site region 85183
Tssr89657 9 54802960 to 54802971 11 - TSS region transcription start site region 89657
Tssr89658 9 54803013 to 54803025 12 - TSS region transcription start site region 89658
Rab7-ps1 9 54824661 to 54825282 621 - pseudogene RAB7, member RAS oncogene family, pseudogene 1
Tssr89659 9 54824769 to 54824796 27 - TSS region transcription start site region 89659
Tssr89660 9 54824866 to 54824915 49 - TSS region transcription start site region 89660
Tssr89661 9 54850064 to 54850068 4 - TSS region transcription start site region 89661
Cpgi21773 9 54863354 to 54864372 1018 CpG island CpG island 21773
Tssr85184 9 54863680 to 54863711 31 + TSS region transcription start site region 85184
Tssr85185 9 54863720 to 54863740 20 + TSS region transcription start site region 85185
Tssr85186 9 54863742 to 54863801 59 + TSS region transcription start site region 85186
Ireb2 9 54863789 to 54912530 48741 + protein coding gene iron responsive element binding protein 2
Tssr85187 9 54863823 to 54863842 19 + TSS region transcription start site region 85187
Tssr85188 9 54863851 to 54863859 8 + TSS region transcription start site region 85188
Obq32 9 54912244 to 54912244 0 QTL obesity QTL 32
Cpgi21774 9 54917115 to 54917689 574 CpG island CpG island 21774
Tssr85189 9 54917252 to 54917295 43 + TSS region transcription start site region 85189
Hykk 9 54917290 to 54949924 32634 + protein coding gene hydroxylysine kinase 1
Tssr85190 9 54917298 to 54917328 30 + TSS region transcription start site region 85190
Tssr85191 9 54917330 to 54917339 9 + TSS region transcription start site region 85191
D9Mit100 9 54935506 to 54935640 134 DNA segment DNA segment, Chr 9, Massachusetts Institute of Technology 100
Tssr2877 9 54949349 to 54949358 9 + TSS region transcription start site region 2877
AY074887 9 54950244 to 54950954 710 - protein coding gene cDNA sequence AY074887
Cpgi21775 9 54950589 to 54951472 883 CpG island CpG island 21775
Tssr85192 9 54950782 to 54950797 15 + TSS region transcription start site region 85192
Tssr85193 9 54950808 to 54950820 12 + TSS region transcription start site region 85193
Psma4 9 54950816 to 54958032 7216 + protein coding gene proteasome (prosome, macropain) subunit, alpha type 4
Tssr85194 9 54950838 to 54950852 14 + TSS region transcription start site region 85194
Tssr85195 9 54951104 to 54951126 22 + TSS region transcription start site region 85195
Tssr85196 9 54956846 to 54956851 5 + TSS region transcription start site region 85196
Chrna5 9 54980880 to 55007779 26899 + protein coding gene cholinergic receptor, nicotinic, alpha polypeptide 5
Cpgi21776 9 54980898 to 54982257 1359 CpG island CpG island 21776
Tssr85197 9 54981482 to 54981496 14 + TSS region transcription start site region 85197
Chrna3 9 55011343 to 55026559 15216 - protein coding gene cholinergic receptor, nicotinic, alpha polypeptide 3
Cpgi21777 9 55015534 to 55015977 443 CpG island CpG island 21777
Cpgi21778 9 55025646 to 55026809 1163 CpG island CpG island 21778
Tssr89662 9 55026458 to 55026486 28 - TSS region transcription start site region 89662
Tssr89663 9 55026509 to 55026523 14 - TSS region transcription start site region 89663
Tssr89664 9 55026524 to 55026539 15 - TSS region transcription start site region 89664
Tssr89665 9 55026541 to 55026599 58 - TSS region transcription start site region 89665
Tssr89666 9 55026618 to 55026657 39 - TSS region transcription start site region 89666
Chrnb4 9 55028154 to 55048779 20625 - protein coding gene cholinergic receptor, nicotinic, beta polypeptide 4
Gm47877 9 55030783 to 55039429 8646 + antisense lncRNA gene predicted gene, 47877
D9Ucl1 9 55036616 to 55036818 202 DNA segment DNA segment, Chr 9, University College London 1
Tssr89667 9 55044000 to 55044017 17 - TSS region transcription start site region 89667
Cpgi21779 9 55048377 to 55048755 378 CpG island CpG island 21779
Tssr89668 9 55048561 to 55048593 32 - TSS region transcription start site region 89668
Tssr89669 9 55048748 to 55048792 44 - TSS region transcription start site region 89669