Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 9:54567223-54727226

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31 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Cpgi21767 9 54586231 to 54587145 914 CpG island CpG island 21767
Tssr85161 9 54586450 to 54586512 62 + TSS region transcription start site region 85161
Idh3a 9 54586511 to 54604662 18151 + protein coding gene isocitrate dehydrogenase 3 (NAD+) alpha
Tssr85162 9 54587028 to 54587050 22 + TSS region transcription start site region 85162
Tssr85163 9 54595084 to 54595099 15 + TSS region transcription start site region 85163
Tssr85164 9 54595104 to 54595133 29 + TSS region transcription start site region 85164
Acsbg1 9 54604892 to 54661885 56993 - protein coding gene acyl-CoA synthetase bubblegum family member 1
Cpgi21768 9 54609058 to 54609324 266 CpG island CpG island 21768
Tssr89648 9 54642657 to 54642669 12 - TSS region transcription start site region 89648
Tssr89649 9 54642674 to 54642698 24 - TSS region transcription start site region 89649
Tssr89650 9 54642699 to 54642723 24 - TSS region transcription start site region 89650
Tssr89651 9 54647199 to 54647222 23 - TSS region transcription start site region 89651
Tssr89652 9 54647223 to 54647226 3 - TSS region transcription start site region 89652
Tssr89653 9 54661666 to 54661716 50 - TSS region transcription start site region 89653
Tssr89654 9 54661844 to 54661855 11 - TSS region transcription start site region 89654
Tssr89655 9 54661884 to 54661912 28 - TSS region transcription start site region 89655
Gm39341 9 54664348 to 54677244 12896 - lncRNA gene predicted gene, 39341
Gm7368 9 54691136 to 54691502 366 - pseudogene predicted gene 7368
Cpgi21769 9 54691354 to 54691849 495 CpG island CpG island 21769
Gm46113 9 54696645 to 54698464 1819 - lncRNA gene predicted gene, 46113
Cpgi21770 9 54698813 to 54700329 1516 CpG island CpG island 21770
Tssr85165 9 54698859 to 54698884 25 + TSS region transcription start site region 85165
Dnaja4 9 54698883 to 54716317 17434 + protein coding gene DnaJ heat shock protein family (Hsp40) member A4
Tssr85166 9 54698890 to 54698896 6 + TSS region transcription start site region 85166
Tssr85167 9 54698900 to 54698907 7 + TSS region transcription start site region 85167
Tssr85168 9 54698921 to 54698927 6 + TSS region transcription start site region 85168
Tssr85169 9 54699126 to 54699140 14 + TSS region transcription start site region 85169
Tssr85170 9 54699518 to 54699525 7 + TSS region transcription start site region 85170
Tssr85171 9 54699548 to 54699565 17 + TSS region transcription start site region 85171
Mir5710 9 54708313 to 54708381 68 + miRNA gene microRNA 5710
Wdr61 9 54717153 to 54734549 17396 - protein coding gene WD repeat domain 61