Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 9:54381231-54792145

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74 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Dmxl2 9 54365158 to 54501626 136468 - protein coding gene Dmx-like 2
Tssr89632 9 54392746 to 54392752 6 - TSS region transcription start site region 89632
Tssr89633 9 54415832 to 54415852 20 - TSS region transcription start site region 89633
Tssr89634 9 54419595 to 54419619 24 - TSS region transcription start site region 89634
Tssr89635 9 54424586 to 54424591 5 - TSS region transcription start site region 89635
Tssr89636 9 54434963 to 54434968 5 - TSS region transcription start site region 89636
Tssr85156 9 54467735 to 54467738 3 + TSS region transcription start site region 85156
Tssr85157 9 54469636 to 54469645 9 + TSS region transcription start site region 85157
Tssr85158 9 54469650 to 54469661 11 + TSS region transcription start site region 85158
Tssr89637 9 54474097 to 54474123 26 - TSS region transcription start site region 89637
Tssr89638 9 54474124 to 54474145 21 - TSS region transcription start site region 89638
Tssr89639 9 54474415 to 54474422 7 - TSS region transcription start site region 89639
Tssr89640 9 54489197 to 54489201 4 - TSS region transcription start site region 89640
Cpgi21765 9 54500964 to 54502253 1289 CpG island CpG island 21765
Tssr89641 9 54501565 to 54501644 79 - TSS region transcription start site region 89641
Tssr89642 9 54501647 to 54501683 36 - TSS region transcription start site region 89642
Tssr89643 9 54501731 to 54501773 42 - TSS region transcription start site region 89643
Tssr89644 9 54501828 to 54501849 21 - TSS region transcription start site region 89644
Tssr89645 9 54501914 to 54501925 11 - TSS region transcription start site region 89645
Tssr85159 9 54534120 to 54534127 7 + TSS region transcription start site region 85159
Gm25980 9 54537185 to 54537402 217 + unclassified non-coding RNA gene predicted gene, 25980
Sh2d7 9 54538984 to 54545020 6036 + protein coding gene SH2 domain containing 7
Tssr85160 9 54538984 to 54538993 9 + TSS region transcription start site region 85160
Cib2 9 54545352 to 54560079 14727 - protein coding gene calcium and integrin binding family member 2
Tssr2875 9 54558777 to 54558815 38 - TSS region transcription start site region 2875
Cpgi21766 9 54559749 to 54560457 708 CpG island CpG island 21766
Tssr89646 9 54560087 to 54560098 11 - TSS region transcription start site region 89646
Tssr89647 9 54560138 to 54560225 87 - TSS region transcription start site region 89647
Cpgi21767 9 54586231 to 54587145 914 CpG island CpG island 21767
Tssr85161 9 54586450 to 54586512 62 + TSS region transcription start site region 85161
Idh3a 9 54586511 to 54604662 18151 + protein coding gene isocitrate dehydrogenase 3 (NAD+) alpha
Tssr85162 9 54587028 to 54587050 22 + TSS region transcription start site region 85162
Tssr85163 9 54595084 to 54595099 15 + TSS region transcription start site region 85163
Tssr85164 9 54595104 to 54595133 29 + TSS region transcription start site region 85164
Acsbg1 9 54604892 to 54661885 56993 - protein coding gene acyl-CoA synthetase bubblegum family member 1
Cpgi21768 9 54609058 to 54609324 266 CpG island CpG island 21768
Tssr89648 9 54642657 to 54642669 12 - TSS region transcription start site region 89648
Tssr89649 9 54642674 to 54642698 24 - TSS region transcription start site region 89649
Tssr89650 9 54642699 to 54642723 24 - TSS region transcription start site region 89650
Tssr89651 9 54647199 to 54647222 23 - TSS region transcription start site region 89651
Tssr89652 9 54647223 to 54647226 3 - TSS region transcription start site region 89652
Tssr89653 9 54661666 to 54661716 50 - TSS region transcription start site region 89653
Tssr89654 9 54661844 to 54661855 11 - TSS region transcription start site region 89654
Tssr89655 9 54661884 to 54661912 28 - TSS region transcription start site region 89655
Gm39341 9 54664348 to 54677244 12896 - lncRNA gene predicted gene, 39341
Gm7368 9 54691136 to 54691502 366 - pseudogene predicted gene 7368
Cpgi21769 9 54691354 to 54691849 495 CpG island CpG island 21769
Gm46113 9 54696645 to 54698464 1819 - lncRNA gene predicted gene, 46113
Cpgi21770 9 54698813 to 54700329 1516 CpG island CpG island 21770
Tssr85165 9 54698859 to 54698884 25 + TSS region transcription start site region 85165
Dnaja4 9 54698883 to 54716317 17434 + protein coding gene DnaJ heat shock protein family (Hsp40) member A4
Tssr85166 9 54698890 to 54698896 6 + TSS region transcription start site region 85166
Tssr85167 9 54698900 to 54698907 7 + TSS region transcription start site region 85167
Tssr85168 9 54698921 to 54698927 6 + TSS region transcription start site region 85168
Tssr85169 9 54699126 to 54699140 14 + TSS region transcription start site region 85169
Tssr85170 9 54699518 to 54699525 7 + TSS region transcription start site region 85170
Tssr85171 9 54699548 to 54699565 17 + TSS region transcription start site region 85171
Mir5710 9 54708313 to 54708381 68 + miRNA gene microRNA 5710
Wdr61 9 54717153 to 54734549 17396 - protein coding gene WD repeat domain 61
Cpgi21771 9 54734276 to 54734708 432 CpG island CpG island 21771
Tssr89656 9 54734468 to 54734523 55 - TSS region transcription start site region 89656
Cpgi21772 9 54764534 to 54766153 1619 CpG island CpG island 21772
Tssr85172 9 54764557 to 54764583 26 + TSS region transcription start site region 85172
Crabp1 9 54764748 to 54773110 8362 + protein coding gene cellular retinoic acid binding protein I
Tssr85173 9 54764794 to 54764813 19 + TSS region transcription start site region 85173
Tssr85174 9 54765552 to 54765564 12 + TSS region transcription start site region 85174
Tssr85175 9 54765629 to 54765640 11 + TSS region transcription start site region 85175
Tssr85176 9 54768441 to 54768451 10 + TSS region transcription start site region 85176
Tssr85177 9 54772868 to 54772877 9 + TSS region transcription start site region 85177
Tssr85178 9 54772879 to 54772886 7 + TSS region transcription start site region 85178
Tssr85179 9 54772888 to 54772894 6 + TSS region transcription start site region 85179
Tssr85180 9 54772909 to 54772917 8 + TSS region transcription start site region 85180
Tssr2876 9 54772931 to 54772943 12 + TSS region transcription start site region 2876
Tssr85181 9 54772953 to 54772968 15 + TSS region transcription start site region 85181