Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.



Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 9:54086486-54541777

43 genes found.

Gene symbol	Chromo- some	Coordinates (bp, mm10)	Size (bp)	Strand	Feature Type	Gene name
Cyp19a1	9	54165859 to 54229532	63673	-	protein coding gene	cytochrome P450, family 19, subfamily a, polypeptide 1
Cpgi21763	9	54180212 to 54180492	280		CpG island	CpG island 21763
Tssr89625	9	54183303 to 54183310	7	-	TSS region	transcription start site region 89625
Tssr89626	9	54193519 to 54193523	4	-	TSS region	transcription start site region 89626
Tssr89627	9	54209940 to 54209944	4	-	TSS region	transcription start site region 89627
Tssr89628	9	54218044 to 54218047	3	-	TSS region	transcription start site region 89628
Tssr89629	9	54223793 to 54223796	3	-	TSS region	transcription start site region 89629
Tssr89630	9	54237259 to 54237266	7	-	TSS region	transcription start site region 89630
Adip20c	9	54242579 to 54286770	44191		QTL	adiposity 20c
Tssr89631	9	54249817 to 54249829	12	-	TSS region	transcription start site region 89631
Tssr85149	9	54249906 to 54249927	21	+	TSS region	transcription start site region 85149
Tssr85150	9	54262340 to 54262341	1	+	TSS region	transcription start site region 85150
Tssr85151	9	54266103 to 54266127	24	+	TSS region	transcription start site region 85151
Gldnos	9	54268580 to 54301570	32990	-	antisense lncRNA gene	gliomedin, opposite strand
Cpgi21764	9	54286275 to 54287062	787		CpG island	CpG island 21764
Tssr85152	9	54286332 to 54286343	11	+	TSS region	transcription start site region 85152
Tssr85153	9	54286389 to 54286398	9	+	TSS region	transcription start site region 85153
Tssr85154	9	54286479 to 54286494	15	+	TSS region	transcription start site region 85154
Gldn	9	54286486 to 54341777	55291	+	protein coding gene	gliomedin
Tssr85155	9	54328943 to 54328947	4	+	TSS region	transcription start site region 85155
Dmxl2	9	54365158 to 54501626	136468	-	protein coding gene	Dmx-like 2
Tssr89632	9	54392746 to 54392752	6	-	TSS region	transcription start site region 89632
Tssr89633	9	54415832 to 54415852	20	-	TSS region	transcription start site region 89633
Tssr89634	9	54419595 to 54419619	24	-	TSS region	transcription start site region 89634
Tssr89635	9	54424586 to 54424591	5	-	TSS region	transcription start site region 89635
Tssr89636	9	54434963 to 54434968	5	-	TSS region	transcription start site region 89636
Tssr85156	9	54467735 to 54467738	3	+	TSS region	transcription start site region 85156
Tssr85157	9	54469636 to 54469645	9	+	TSS region	transcription start site region 85157
Tssr85158	9	54469650 to 54469661	11	+	TSS region	transcription start site region 85158
Tssr89637	9	54474097 to 54474123	26	-	TSS region	transcription start site region 89637
Tssr89638	9	54474124 to 54474145	21	-	TSS region	transcription start site region 89638
Tssr89639	9	54474415 to 54474422	7	-	TSS region	transcription start site region 89639
Tssr89640	9	54489197 to 54489201	4	-	TSS region	transcription start site region 89640
Cpgi21765	9	54500964 to 54502253	1289		CpG island	CpG island 21765
Tssr89641	9	54501565 to 54501644	79	-	TSS region	transcription start site region 89641
Tssr89642	9	54501647 to 54501683	36	-	TSS region	transcription start site region 89642
Tssr89643	9	54501731 to 54501773	42	-	TSS region	transcription start site region 89643
Tssr89644	9	54501828 to 54501849	21	-	TSS region	transcription start site region 89644
Tssr89645	9	54501914 to 54501925	11	-	TSS region	transcription start site region 89645
Tssr85159	9	54534120 to 54534127	7	+	TSS region	transcription start site region 85159
Gm25980	9	54537185 to 54537402	217	+	unclassified non-coding RNA gene	predicted gene, 25980
Tssr85160	9	54538984 to 54538993	9	+	TSS region	transcription start site region 85160
Sh2d7	9	54538984 to 54545020	6036	+	protein coding gene	SH2 domain containing 7