Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 9:53801647-55201683

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187 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Adip20b 9 48789608 to 53884418 5094810 QTL adiposity 20b
Slc35f2 9 53771538 to 53818154 46616 + protein coding gene solute carrier family 35, member F2
Tssr85148 9 53850243 to 53850257 14 + TSS region transcription start site region 85148
Sln 9 53850251 to 53853849 3598 + protein coding gene sarcolipin
Gm16380 9 53884084 to 53884561 477 + pseudogene predicted pseudogene 16380
Cpgi21760 9 53884392 to 53884595 203 CpG island CpG island 21760
Gm39340 9 53899252 to 53901589 2337 + lncRNA gene predicted gene, 39340
Elmod1 9 53911457 to 53975301 63844 - protein coding gene ELMO/CED-12 domain containing 1
Tssr89615 9 53912813 to 53912817 4 - TSS region transcription start site region 89615
Tssr89616 9 53936090 to 53936097 7 - TSS region transcription start site region 89616
Tssr89617 9 53936100 to 53936105 5 - TSS region transcription start site region 89617
Cpgi21761 9 53974522 to 53975502 980 CpG island CpG island 21761
Tssr89618 9 53975097 to 53975115 18 - TSS region transcription start site region 89618
Tssr89619 9 53975120 to 53975202 82 - TSS region transcription start site region 89619
Tssr89620 9 53975246 to 53975348 102 - TSS region transcription start site region 89620
Tssr89621 9 53975352 to 53975363 11 - TSS region transcription start site region 89621
Tnfaip8l3 9 54025606 to 54068411 42805 - protein coding gene tumor necrosis factor, alpha-induced protein 8-like 3
Gm48346 9 54043312 to 54047798 4486 + lincRNA gene predicted gene, 48346
Gm48345 9 54046615 to 54046783 168 + pseudogene predicted gene, 48345
Cpgi21762 9 54067875 to 54068470 595 CpG island CpG island 21762
Tssr89622 9 54068346 to 54068416 70 - TSS region transcription start site region 89622
Tssr89623 9 54068469 to 54068512 43 - TSS region transcription start site region 89623
Tssr89624 9 54068561 to 54068569 8 - TSS region transcription start site region 89624
Cyp19a1 9 54165859 to 54229532 63673 - protein coding gene cytochrome P450, family 19, subfamily a, polypeptide 1
Cpgi21763 9 54180212 to 54180492 280 CpG island CpG island 21763
Tssr89625 9 54183303 to 54183310 7 - TSS region transcription start site region 89625
Tssr89626 9 54193519 to 54193523 4 - TSS region transcription start site region 89626
Tssr89627 9 54209940 to 54209944 4 - TSS region transcription start site region 89627
Tssr89628 9 54218044 to 54218047 3 - TSS region transcription start site region 89628
Tssr89629 9 54223793 to 54223796 3 - TSS region transcription start site region 89629
Tssr89630 9 54237259 to 54237266 7 - TSS region transcription start site region 89630
Adip20c 9 54242579 to 54286770 44191 QTL adiposity 20c
Tssr89631 9 54249817 to 54249829 12 - TSS region transcription start site region 89631
Tssr85149 9 54249906 to 54249927 21 + TSS region transcription start site region 85149
Tssr85150 9 54262340 to 54262341 1 + TSS region transcription start site region 85150
Tssr85151 9 54266103 to 54266127 24 + TSS region transcription start site region 85151
Gldnos 9 54268580 to 54301570 32990 - antisense lncRNA gene gliomedin, opposite strand
Cpgi21764 9 54286275 to 54287062 787 CpG island CpG island 21764
Tssr85152 9 54286332 to 54286343 11 + TSS region transcription start site region 85152
Tssr85153 9 54286389 to 54286398 9 + TSS region transcription start site region 85153
Tssr85154 9 54286479 to 54286494 15 + TSS region transcription start site region 85154
Gldn 9 54286486 to 54341777 55291 + protein coding gene gliomedin
Tssr85155 9 54328943 to 54328947 4 + TSS region transcription start site region 85155
Dmxl2 9 54365158 to 54501626 136468 - protein coding gene Dmx-like 2
Tssr89632 9 54392746 to 54392752 6 - TSS region transcription start site region 89632
Tssr89633 9 54415832 to 54415852 20 - TSS region transcription start site region 89633
Tssr89634 9 54419595 to 54419619 24 - TSS region transcription start site region 89634
Tssr89635 9 54424586 to 54424591 5 - TSS region transcription start site region 89635
Tssr89636 9 54434963 to 54434968 5 - TSS region transcription start site region 89636
Tssr85156 9 54467735 to 54467738 3 + TSS region transcription start site region 85156
Tssr85157 9 54469636 to 54469645 9 + TSS region transcription start site region 85157
Tssr85158 9 54469650 to 54469661 11 + TSS region transcription start site region 85158
Tssr89637 9 54474097 to 54474123 26 - TSS region transcription start site region 89637
Tssr89638 9 54474124 to 54474145 21 - TSS region transcription start site region 89638
Tssr89639 9 54474415 to 54474422 7 - TSS region transcription start site region 89639
Tssr89640 9 54489197 to 54489201 4 - TSS region transcription start site region 89640
Cpgi21765 9 54500964 to 54502253 1289 CpG island CpG island 21765
Tssr89641 9 54501565 to 54501644 79 - TSS region transcription start site region 89641
Tssr89642 9 54501647 to 54501683 36 - TSS region transcription start site region 89642
Tssr89643 9 54501731 to 54501773 42 - TSS region transcription start site region 89643
Tssr89644 9 54501828 to 54501849 21 - TSS region transcription start site region 89644
Tssr89645 9 54501914 to 54501925 11 - TSS region transcription start site region 89645
Tssr85159 9 54534120 to 54534127 7 + TSS region transcription start site region 85159
Gm25980 9 54537185 to 54537402 217 + unclassified non-coding RNA gene predicted gene, 25980
Sh2d7 9 54538984 to 54545020 6036 + protein coding gene SH2 domain containing 7
Tssr85160 9 54538984 to 54538993 9 + TSS region transcription start site region 85160
Cib2 9 54545352 to 54560079 14727 - protein coding gene calcium and integrin binding family member 2
Tssr2875 9 54558777 to 54558815 38 - TSS region transcription start site region 2875
Cpgi21766 9 54559749 to 54560457 708 CpG island CpG island 21766
Tssr89646 9 54560087 to 54560098 11 - TSS region transcription start site region 89646
Tssr89647 9 54560138 to 54560225 87 - TSS region transcription start site region 89647
Cpgi21767 9 54586231 to 54587145 914 CpG island CpG island 21767
Tssr85161 9 54586450 to 54586512 62 + TSS region transcription start site region 85161
Idh3a 9 54586511 to 54604662 18151 + protein coding gene isocitrate dehydrogenase 3 (NAD+) alpha
Tssr85162 9 54587028 to 54587050 22 + TSS region transcription start site region 85162
Tssr85163 9 54595084 to 54595099 15 + TSS region transcription start site region 85163
Tssr85164 9 54595104 to 54595133 29 + TSS region transcription start site region 85164
Acsbg1 9 54604892 to 54661885 56993 - protein coding gene acyl-CoA synthetase bubblegum family member 1
Cpgi21768 9 54609058 to 54609324 266 CpG island CpG island 21768
Tssr89648 9 54642657 to 54642669 12 - TSS region transcription start site region 89648
Tssr89649 9 54642674 to 54642698 24 - TSS region transcription start site region 89649
Tssr89650 9 54642699 to 54642723 24 - TSS region transcription start site region 89650
Tssr89651 9 54647199 to 54647222 23 - TSS region transcription start site region 89651
Tssr89652 9 54647223 to 54647226 3 - TSS region transcription start site region 89652
Tssr89653 9 54661666 to 54661716 50 - TSS region transcription start site region 89653
Tssr89654 9 54661844 to 54661855 11 - TSS region transcription start site region 89654
Tssr89655 9 54661884 to 54661912 28 - TSS region transcription start site region 89655
Gm39341 9 54664348 to 54677244 12896 - lncRNA gene predicted gene, 39341
Gm7368 9 54691136 to 54691502 366 - pseudogene predicted gene 7368
Cpgi21769 9 54691354 to 54691849 495 CpG island CpG island 21769
Gm46113 9 54696645 to 54698464 1819 - lncRNA gene predicted gene, 46113
Cpgi21770 9 54698813 to 54700329 1516 CpG island CpG island 21770
Tssr85165 9 54698859 to 54698884 25 + TSS region transcription start site region 85165
Dnaja4 9 54698883 to 54716317 17434 + protein coding gene DnaJ heat shock protein family (Hsp40) member A4
Tssr85166 9 54698890 to 54698896 6 + TSS region transcription start site region 85166
Tssr85167 9 54698900 to 54698907 7 + TSS region transcription start site region 85167
Tssr85168 9 54698921 to 54698927 6 + TSS region transcription start site region 85168
Tssr85169 9 54699126 to 54699140 14 + TSS region transcription start site region 85169
Tssr85170 9 54699518 to 54699525 7 + TSS region transcription start site region 85170
Tssr85171 9 54699548 to 54699565 17 + TSS region transcription start site region 85171
Mir5710 9 54708313 to 54708381 68 + miRNA gene microRNA 5710
Wdr61 9 54717153 to 54734549 17396 - protein coding gene WD repeat domain 61
Cpgi21771 9 54734276 to 54734708 432 CpG island CpG island 21771
Tssr89656 9 54734468 to 54734523 55 - TSS region transcription start site region 89656
Cpgi21772 9 54764534 to 54766153 1619 CpG island CpG island 21772
Tssr85172 9 54764557 to 54764583 26 + TSS region transcription start site region 85172
Crabp1 9 54764748 to 54773110 8362 + protein coding gene cellular retinoic acid binding protein I
Tssr85173 9 54764794 to 54764813 19 + TSS region transcription start site region 85173
Tssr85174 9 54765552 to 54765564 12 + TSS region transcription start site region 85174
Tssr85175 9 54765629 to 54765640 11 + TSS region transcription start site region 85175
Tssr85176 9 54768441 to 54768451 10 + TSS region transcription start site region 85176
Tssr85177 9 54772868 to 54772877 9 + TSS region transcription start site region 85177
Tssr85178 9 54772879 to 54772886 7 + TSS region transcription start site region 85178
Tssr85179 9 54772888 to 54772894 6 + TSS region transcription start site region 85179
Tssr85180 9 54772909 to 54772917 8 + TSS region transcription start site region 85180
Tssr2876 9 54772931 to 54772943 12 + TSS region transcription start site region 2876
Tssr85181 9 54772953 to 54772968 15 + TSS region transcription start site region 85181
Tssr85182 9 54801760 to 54801774 14 + TSS region transcription start site region 85182
Tssr85183 9 54801776 to 54801801 25 + TSS region transcription start site region 85183
Tssr89657 9 54802960 to 54802971 11 - TSS region transcription start site region 89657
Tssr89658 9 54803013 to 54803025 12 - TSS region transcription start site region 89658
Rab7-ps1 9 54824661 to 54825282 621 - pseudogene RAB7, member RAS oncogene family, pseudogene 1
Tssr89659 9 54824769 to 54824796 27 - TSS region transcription start site region 89659
Tssr89660 9 54824866 to 54824915 49 - TSS region transcription start site region 89660
Tssr89661 9 54850064 to 54850068 4 - TSS region transcription start site region 89661
Cpgi21773 9 54863354 to 54864372 1018 CpG island CpG island 21773
Tssr85184 9 54863680 to 54863711 31 + TSS region transcription start site region 85184
Tssr85185 9 54863720 to 54863740 20 + TSS region transcription start site region 85185
Tssr85186 9 54863742 to 54863801 59 + TSS region transcription start site region 85186
Ireb2 9 54863789 to 54912530 48741 + protein coding gene iron responsive element binding protein 2
Tssr85187 9 54863823 to 54863842 19 + TSS region transcription start site region 85187
Tssr85188 9 54863851 to 54863859 8 + TSS region transcription start site region 85188
Obq32 9 54912244 to 54912244 0 QTL obesity QTL 32
Cpgi21774 9 54917115 to 54917689 574 CpG island CpG island 21774
Tssr85189 9 54917252 to 54917295 43 + TSS region transcription start site region 85189
Hykk 9 54917290 to 54949924 32634 + protein coding gene hydroxylysine kinase 1
Tssr85190 9 54917298 to 54917328 30 + TSS region transcription start site region 85190
Tssr85191 9 54917330 to 54917339 9 + TSS region transcription start site region 85191
D9Mit100 9 54935506 to 54935640 134 DNA segment DNA segment, Chr 9, Massachusetts Institute of Technology 100
Tssr2877 9 54949349 to 54949358 9 + TSS region transcription start site region 2877
AY074887 9 54950244 to 54950954 710 - protein coding gene cDNA sequence AY074887
Cpgi21775 9 54950589 to 54951472 883 CpG island CpG island 21775
Tssr85192 9 54950782 to 54950797 15 + TSS region transcription start site region 85192
Tssr85193 9 54950808 to 54950820 12 + TSS region transcription start site region 85193
Psma4 9 54950816 to 54958032 7216 + protein coding gene proteasome (prosome, macropain) subunit, alpha type 4
Tssr85194 9 54950838 to 54950852 14 + TSS region transcription start site region 85194
Tssr85195 9 54951104 to 54951126 22 + TSS region transcription start site region 85195
Tssr85196 9 54956846 to 54956851 5 + TSS region transcription start site region 85196
Chrna5 9 54980880 to 55007779 26899 + protein coding gene cholinergic receptor, nicotinic, alpha polypeptide 5
Cpgi21776 9 54980898 to 54982257 1359 CpG island CpG island 21776
Tssr85197 9 54981482 to 54981496 14 + TSS region transcription start site region 85197
Chrna3 9 55011343 to 55026559 15216 - protein coding gene cholinergic receptor, nicotinic, alpha polypeptide 3
Cpgi21777 9 55015534 to 55015977 443 CpG island CpG island 21777
Cpgi21778 9 55025646 to 55026809 1163 CpG island CpG island 21778
Tssr89662 9 55026458 to 55026486 28 - TSS region transcription start site region 89662
Tssr89663 9 55026509 to 55026523 14 - TSS region transcription start site region 89663
Tssr89664 9 55026524 to 55026539 15 - TSS region transcription start site region 89664
Tssr89665 9 55026541 to 55026599 58 - TSS region transcription start site region 89665
Tssr89666 9 55026618 to 55026657 39 - TSS region transcription start site region 89666
Chrnb4 9 55028154 to 55048779 20625 - protein coding gene cholinergic receptor, nicotinic, beta polypeptide 4
Gm47877 9 55030783 to 55039429 8646 + antisense lncRNA gene predicted gene, 47877
D9Ucl1 9 55036616 to 55036818 202 DNA segment DNA segment, Chr 9, University College London 1
Tssr89667 9 55044000 to 55044017 17 - TSS region transcription start site region 89667
Cpgi21779 9 55048377 to 55048755 378 CpG island CpG island 21779
Tssr89668 9 55048561 to 55048593 32 - TSS region transcription start site region 89668
Tssr89669 9 55048748 to 55048792 44 - TSS region transcription start site region 89669
Gm47886 9 55054804 to 55055238 434 + pseudogene predicted gene, 47886
Gm47887 9 55064927 to 55067463 2536 - lincRNA gene predicted gene, 47887
Gm7395 9 55094329 to 55095370 1041 - pseudogene predicted gene 7395
D9Ertd496e 9 55116164 to 55116378 214 DNA segment DNA segment, Chr 9, ERATO Doi 496, expressed
D9Mit312 9 55129586 to 55129691 105 DNA segment DNA Segment, Chr 9, Massachusetts Institute of Technology 312
1700071A11Rik 9 55148480 to 55149398 918 unclassified gene RIKEN cDNA 1700071A11 gene
Cpgi21780 9 55148739 to 55150475 1736 CpG island CpG island 21780
Ube2q2 9 55148854 to 55207529 58675 + protein coding gene ubiquitin-conjugating enzyme E2Q family member 2
Tssr85198 9 55149300 to 55149312 12 + TSS region transcription start site region 85198
Tssr85199 9 55149364 to 55149395 31 + TSS region transcription start site region 85199
Tssr85200 9 55149413 to 55149432 19 + TSS region transcription start site region 85200
Tssr85201 9 55149434 to 55149448 14 + TSS region transcription start site region 85201
Tssr85202 9 55149453 to 55149469 16 + TSS region transcription start site region 85202
Tssr85203 9 55149603 to 55149606 3 + TSS region transcription start site region 85203
Tssr85204 9 55149621 to 55149630 9 + TSS region transcription start site region 85204
Tssr89670 9 55149969 to 55150016 47 - TSS region transcription start site region 89670
Tssr85205 9 55150050 to 55150083 33 + TSS region transcription start site region 85205
Arlsq2 9 55192291 to 55192291 0 QTL aortic root lesion size QTL 2
Arlsq1 9 55192291 to 55192291 0 QTL aortic root lesion size QTL 1
Pcho9 9 55192291 to 55192291 0 QTL plasma cholesterol 9
Tssr85206 9 55201583 to 55201589 6 + TSS region transcription start site region 85206