Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 9:5364145-9844167

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299 genes found. Result truncated to 200 rows.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Casp12 9 5345442 to 5373034 27592 + protein coding gene caspase 12
Tssr88055 9 5440779 to 5440784 5 - TSS region transcription start site region 88055
Gm48506 9 5796779 to 5797033 254 + pseudogene predicted gene, 48506
Tssr2756 9 5857243 to 5857248 5 + TSS region transcription start site region 2756
Gm6015 9 5861647 to 5865418 3771 + pseudogene predicted gene 6015
Gm48640 9 5952442 to 5952667 225 - pseudogene predicted gene, 48640
Gm7425 9 6015245 to 6015935 690 + pseudogene predicted gene 7425
Gm9662 9 6070313 to 6074278 3965 + pseudogene predicted gene 9662
Cpgi21338 9 6168400 to 6168913 513 CpG island CpG island 21338
Tssr83664 9 6168449 to 6168460 11 + TSS region transcription start site region 83664
Tssr83665 9 6168470 to 6168488 18 + TSS region transcription start site region 83665
Tssr83666 9 6168553 to 6168567 14 + TSS region transcription start site region 83666
Tssr83667 9 6168570 to 6168595 25 + TSS region transcription start site region 83667
Pdgfd 9 6168584 to 6378850 210266 + protein coding gene platelet-derived growth factor, D polypeptide
Tssr83668 9 6168601 to 6168617 16 + TSS region transcription start site region 83668
Tssr83669 9 6168638 to 6168671 33 + TSS region transcription start site region 83669
Tssr2757 9 6168678 to 6168694 16 + TSS region transcription start site region 2757
Tssr83670 9 6193590 to 6193595 5 + TSS region transcription start site region 83670
Tssr83671 9 6238030 to 6238038 8 + TSS region transcription start site region 83671
D9Mit186 9 6256738 to 6256885 147 DNA segment DNA segment, Chr 9, Massachusetts Institute of Technology 186
Ddi1 9 6265028 to 6266547 1519 - protein coding gene DNA-damage inducible 1
Tssr88056 9 6266544 to 6266553 9 - TSS region transcription start site region 88056
Tssr88057 9 6266562 to 6266590 28 - TSS region transcription start site region 88057
Gm7406 9 6354116 to 6356871 2755 unclassified gene predicted gene 7406
Gm21089 9 6594237 to 6594561 324 + pseudogene predicted gene, 21089
Gm48674 9 6665497 to 6665775 278 - pseudogene predicted gene, 48674
Gm23097 9 6706342 to 6706446 104 - snRNA gene predicted gene, 23097
Gm48675 9 6801843 to 6802419 576 + pseudogene predicted gene, 48675
8430439C15Rik 9 6911588 to 6912375 787 unclassified gene RIKEN cDNA 8430439C15 gene
Dync2h1 9 6928503 to 7177282 248779 - protein coding gene dynein cytoplasmic 2 heavy chain 1
Tssr2758 9 6953271 to 6953280 9 + TSS region transcription start site region 2758
Tssr88058 9 7015852 to 7015856 4 - TSS region transcription start site region 88058
Cpgi21339 9 7176624 to 7177199 575 CpG island CpG island 21339
Tssr88059 9 7176970 to 7176997 27 - TSS region transcription start site region 88059
Tssr88060 9 7177000 to 7177063 63 - TSS region transcription start site region 88060
Cpgi21340 9 7184229 to 7185303 1074 CpG island CpG island 21340
Dcun1d5 9 7184373 to 7207042 22669 + protein coding gene DCN1, defective in cullin neddylation 1, domain containing 5 (S. cerevisiae)
Tssr88061 9 7184440 to 7184518 78 - TSS region transcription start site region 88061
Tssr83672 9 7184514 to 7184567 53 + TSS region transcription start site region 83672
Tssr88062 9 7221541 to 7221553 12 - TSS region transcription start site region 88062
Gm47741 9 7238154 to 7238379 225 - pseudogene predicted gene, 47741
Gm31639 9 7255494 to 7271508 16014 + lncRNA gene predicted gene, 31639
Mmp13 9 7272514 to 7283331 10817 + protein coding gene matrix metallopeptidase 13
Tssr83673 9 7272520 to 7272537 17 + TSS region transcription start site region 83673
Tssr83674 9 7277910 to 7277938 28 + TSS region transcription start site region 83674
Tssr83675 9 7277962 to 7277977 15 + TSS region transcription start site region 83675
Tssr83676 9 7280245 to 7280256 11 + TSS region transcription start site region 83676
Tssr83677 9 7280853 to 7280875 22 + TSS region transcription start site region 83677
Tssr83678 9 7282201 to 7282216 15 + TSS region transcription start site region 83678
Tssr83679 9 7282315 to 7282336 21 + TSS region transcription start site region 83679
Tssr83680 9 7282379 to 7282399 20 + TSS region transcription start site region 83680
Tssr88063 9 7332753 to 7332760 7 - TSS region transcription start site region 88063
Tssr83681 9 7344324 to 7344335 11 + TSS region transcription start site region 83681
Tssr83682 9 7344357 to 7344406 49 + TSS region transcription start site region 83682
Mmp12 9 7344397 to 7360461 16064 + protein coding gene matrix metallopeptidase 12
Tssr83683 9 7346108 to 7346154 46 + TSS region transcription start site region 83683
Tssr83684 9 7347404 to 7347410 6 + TSS region transcription start site region 83684
Tssr83685 9 7347464 to 7347473 9 + TSS region transcription start site region 83685
Tssr83686 9 7347497 to 7347522 25 + TSS region transcription start site region 83686
Tssr83687 9 7347531 to 7347540 9 + TSS region transcription start site region 83687
Tssr83688 9 7348203 to 7348237 34 + TSS region transcription start site region 83688
Tssr83689 9 7348568 to 7348591 23 + TSS region transcription start site region 83689
Tssr83690 9 7348604 to 7348618 14 + TSS region transcription start site region 83690
Tssr83691 9 7348623 to 7348647 24 + TSS region transcription start site region 83691
Tssr83692 9 7348654 to 7348670 16 + TSS region transcription start site region 83692
Tssr83693 9 7348690 to 7348702 12 + TSS region transcription start site region 83693
Tssr88064 9 7348690 to 7348729 39 - TSS region transcription start site region 88064
Tssr83694 9 7348716 to 7348731 15 + TSS region transcription start site region 83694
Tssr83695 9 7348788 to 7348813 25 + TSS region transcription start site region 83695
Tssr88065 9 7348791 to 7348820 29 - TSS region transcription start site region 88065
Tssr83696 9 7348843 to 7348876 33 + TSS region transcription start site region 83696
Tssr83697 9 7348902 to 7348917 15 + TSS region transcription start site region 83697
Tssr83698 9 7349057 to 7349094 37 + TSS region transcription start site region 83698
Tssr83699 9 7349107 to 7349118 11 + TSS region transcription start site region 83699
Tssr83700 9 7349155 to 7349179 24 + TSS region transcription start site region 83700
Tssr83701 9 7349200 to 7349227 27 + TSS region transcription start site region 83701
Tssr83702 9 7349237 to 7349249 12 + TSS region transcription start site region 83702
Tssr83703 9 7349720 to 7349731 11 + TSS region transcription start site region 83703
Tssr83704 9 7349752 to 7349765 13 + TSS region transcription start site region 83704
Tssr83705 9 7350006 to 7350027 21 + TSS region transcription start site region 83705
Tssr83706 9 7350030 to 7350054 24 + TSS region transcription start site region 83706
Tssr83707 9 7350065 to 7350076 11 + TSS region transcription start site region 83707
Tssr83708 9 7350086 to 7350094 8 + TSS region transcription start site region 83708
Tssr83709 9 7350106 to 7350117 11 + TSS region transcription start site region 83709
Tssr88066 9 7350112 to 7350123 11 - TSS region transcription start site region 88066
Tssr83710 9 7350616 to 7350634 18 + TSS region transcription start site region 83710
Tssr83711 9 7351103 to 7351116 13 + TSS region transcription start site region 83711
Tssr83712 9 7351973 to 7351985 12 + TSS region transcription start site region 83712
Tssr83713 9 7352375 to 7352386 11 + TSS region transcription start site region 83713
Tssr83714 9 7352547 to 7352570 23 + TSS region transcription start site region 83714
Tssr83715 9 7352599 to 7352614 15 + TSS region transcription start site region 83715
Tssr83716 9 7352870 to 7352907 37 + TSS region transcription start site region 83716
Tssr83717 9 7352911 to 7352918 7 + TSS region transcription start site region 83717
Tssr83718 9 7352931 to 7352952 21 + TSS region transcription start site region 83718
Tssr83719 9 7352957 to 7352985 28 + TSS region transcription start site region 83719
Tssr88067 9 7352980 to 7353013 33 - TSS region transcription start site region 88067
Tssr83720 9 7352986 to 7353018 32 + TSS region transcription start site region 83720
Tssr88068 9 7353028 to 7353059 31 - TSS region transcription start site region 88068
Tssr83721 9 7353238 to 7353249 11 + TSS region transcription start site region 83721
Tssr83722 9 7353440 to 7353530 90 + TSS region transcription start site region 83722
Tssr88069 9 7353475 to 7353505 30 - TSS region transcription start site region 88069
Tssr2759 9 7353543 to 7353546 3 + TSS region transcription start site region 2759
Tssr83723 9 7353564 to 7353577 13 + TSS region transcription start site region 83723
Tssr83724 9 7353885 to 7353896 11 + TSS region transcription start site region 83724
Tssr83725 9 7354009 to 7354033 24 + TSS region transcription start site region 83725
Tssr83726 9 7354098 to 7354128 30 + TSS region transcription start site region 83726
Tssr83727 9 7354710 to 7354798 88 + TSS region transcription start site region 83727
Tssr88070 9 7354751 to 7354778 27 - TSS region transcription start site region 88070
Tssr83728 9 7354802 to 7354823 21 + TSS region transcription start site region 83728
Tssr83729 9 7354824 to 7354832 8 + TSS region transcription start site region 83729
Tssr83730 9 7355304 to 7355314 10 + TSS region transcription start site region 83730
Tssr83731 9 7355318 to 7355358 40 + TSS region transcription start site region 83731
Tssr83732 9 7355359 to 7355391 32 + TSS region transcription start site region 83732
Tssr83733 9 7355396 to 7355439 43 + TSS region transcription start site region 83733
Tssr88071 9 7355415 to 7355426 11 - TSS region transcription start site region 88071
Tssr83734 9 7355824 to 7355835 11 + TSS region transcription start site region 83734
Tssr83735 9 7355846 to 7355857 11 + TSS region transcription start site region 83735
Tssr83736 9 7357801 to 7357860 59 + TSS region transcription start site region 83736
Tssr83737 9 7357864 to 7357884 20 + TSS region transcription start site region 83737
Tssr83738 9 7358212 to 7358375 163 + TSS region transcription start site region 83738
Tssr88072 9 7358261 to 7358283 22 - TSS region transcription start site region 88072
Tssr88073 9 7358333 to 7358363 30 - TSS region transcription start site region 88073
Tssr83739 9 7358378 to 7358409 31 + TSS region transcription start site region 83739
Tssr83740 9 7358441 to 7358460 19 + TSS region transcription start site region 83740
Tssr83741 9 7358515 to 7358526 11 + TSS region transcription start site region 83741
Tssr88074 9 7358680 to 7358685 5 - TSS region transcription start site region 88074
Mmp1b 9 7368239 to 7388047 19808 - protein coding gene matrix metallopeptidase 1b (interstitial collagenase)
Mmp3 9 7445822 to 7455975 10153 + protein coding gene matrix metallopeptidase 3
Tssr83742 9 7445837 to 7445855 18 + TSS region transcription start site region 83742
Tssr83743 9 7464139 to 7464145 6 + TSS region transcription start site region 83743
Mmp1a 9 7464141 to 7476869 12728 + polymorphic pseudogene matrix metallopeptidase 1a (interstitial collagenase)
Tssr83744 9 7502340 to 7502345 5 + TSS region transcription start site region 83744
Mmp10 9 7502352 to 7510240 7888 + protein coding gene matrix metallopeptidase 10
Tssr88075 9 7556270 to 7556278 8 - TSS region transcription start site region 88075
Tssr2760 9 7558239 to 7558246 7 - TSS region transcription start site region 2760
Tssr83745 9 7558448 to 7558465 17 + TSS region transcription start site region 83745
Mmp8 9 7558456 to 7568485 10029 + protein coding gene matrix metallopeptidase 8
Gm31751 9 7558535 to 7622658 64123 - lncRNA gene predicted gene, 31751
Tssr83746 9 7560610 to 7560621 11 + TSS region transcription start site region 83746
Tssr83747 9 7561645 to 7561656 11 + TSS region transcription start site region 83747
Tssr83748 9 7566197 to 7566198 1 + TSS region transcription start site region 83748
Tssr83749 9 7567756 to 7567771 15 + TSS region transcription start site region 83749
Mmp27 9 7571396 to 7581885 10489 + protein coding gene matrix metallopeptidase 27
Tssr83750 9 7571457 to 7571489 32 + TSS region transcription start site region 83750
Tssr88076 9 7572741 to 7572752 11 - TSS region transcription start site region 88076
Tssr88077 9 7593401 to 7593411 10 - TSS region transcription start site region 88077
Tssr88078 9 7593439 to 7593443 4 - TSS region transcription start site region 88078
Tssr83751 9 7593687 to 7593693 6 + TSS region transcription start site region 83751
Gm47616 9 7599494 to 7599640 146 + pseudogene predicted gene, 47616
Tssr88079 9 7604109 to 7604118 9 - TSS region transcription start site region 88079
Tssr88080 9 7604127 to 7604130 3 - TSS region transcription start site region 88080
Tssr88081 9 7604145 to 7604167 22 - TSS region transcription start site region 88081
Tssr88082 9 7604174 to 7604188 14 - TSS region transcription start site region 88082
Tssr83752 9 7628200 to 7628204 4 + TSS region transcription start site region 83752
Mmp20 9 7628231 to 7674968 46737 + protein coding gene matrix metallopeptidase 20 (enamelysin)
Tssr88083 9 7661364 to 7661367 3 - TSS region transcription start site region 88083
AV064505 9 7669429 to 7695631 26202 - antisense lncRNA gene expressed sequence AV064505
Gm19212 9 7688974 to 7689823 849 - pseudogene predicted gene, 19212
Tssr83753 9 7692086 to 7692103 17 + TSS region transcription start site region 83753
Mmp7 9 7692090 to 7699585 7495 + protein coding gene matrix metallopeptidase 7
Tssr83754 9 7692339 to 7692366 27 + TSS region transcription start site region 83754
D9Mit57 9 7694215 to 7694379 164 DNA segment DNA segment, Chr 9, Massachusetts Institute of Technology 57
Tssr83755 9 7695261 to 7695274 13 + TSS region transcription start site region 83755
Tssr83756 9 7699504 to 7699515 11 + TSS region transcription start site region 83756
Tssr2761 9 7699912 to 7699915 3 + TSS region transcription start site region 2761
Cbx3-ps8 9 7723147 to 7723694 547 + pseudogene chromobox 3, pseudogene 8
Gm10709 9 7751725 to 7752204 479 + pseudogene predicted gene 10709
Cpgi21341 9 7763642 to 7764883 1241 CpG island CpG island 21341
Tssr88084 9 7763748 to 7763761 13 - TSS region transcription start site region 88084
Tssr88085 9 7763762 to 7763775 13 - TSS region transcription start site region 88085
Tssr83757 9 7764058 to 7764177 119 + TSS region transcription start site region 83757
Tmem123 9 7764077 to 7794333 30256 + protein coding gene transmembrane protein 123
Tssr83758 9 7764179 to 7764190 11 + TSS region transcription start site region 83758
Tssr83759 9 7764200 to 7764211 11 + TSS region transcription start site region 83759
Tssr88086 9 7764755 to 7764789 34 - TSS region transcription start site region 88086
Tssr83760 9 7767772 to 7767801 29 + TSS region transcription start site region 83760
Mir5618 9 7784390 to 7784440 50 + miRNA gene microRNA 5618
Tssr83761 9 7786796 to 7786803 7 + TSS region transcription start site region 83761
Tssr83762 9 7790974 to 7791023 49 + TSS region transcription start site region 83762
Tssr83763 9 7792679 to 7792695 16 + TSS region transcription start site region 83763
Tssr83764 9 7792717 to 7792739 22 + TSS region transcription start site region 83764
Tssr83765 9 7793297 to 7793312 15 + TSS region transcription start site region 83765
Birc2 9 7818227 to 7837064 18837 - protein coding gene baculoviral IAP repeat-containing 2
Cpgi21342 9 7836425 to 7837595 1170 CpG island CpG island 21342
Tssr88087 9 7836799 to 7836810 11 - TSS region transcription start site region 88087
Tssr88088 9 7836836 to 7836850 14 - TSS region transcription start site region 88088
Tssr88089 9 7836860 to 7836883 23 - TSS region transcription start site region 88089
Tssr88090 9 7836889 to 7836910 21 - TSS region transcription start site region 88090
Tssr88091 9 7836961 to 7836974 13 - TSS region transcription start site region 88091
Tssr88092 9 7836980 to 7837096 116 - TSS region transcription start site region 88092
Tssr83766 9 7837136 to 7837152 16 + TSS region transcription start site region 83766
Tssr83767 9 7837161 to 7837243 82 + TSS region transcription start site region 83767
Birc3 9 7848699 to 7873186 24487 - protein coding gene baculoviral IAP repeat-containing 3
Tssr88093 9 7850630 to 7850657 27 - TSS region transcription start site region 88093
Tssr88094 9 7864254 to 7864300 46 - TSS region transcription start site region 88094
Tssr88095 9 7864737 to 7864751 14 - TSS region transcription start site region 88095
Tssr88096 9 7865052 to 7865064 12 - TSS region transcription start site region 88096
Tssr88097 9 7867982 to 7867988 6 - TSS region transcription start site region 88097
Tssr88098 9 7868038 to 7868067 29 - TSS region transcription start site region 88098
Tssr88099 9 7868107 to 7868155 48 - TSS region transcription start site region 88099