Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 9:53124149-53851740

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84 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Ddx10 9 53098635 to 53248053 149418 - protein coding gene DEAD (Asp-Glu-Ala-Asp) box polypeptide 10
Tssr89594 9 53157328 to 53157340 12 - TSS region transcription start site region 89594
Gm47986 9 53164188 to 53164679 491 + pseudogene predicted gene, 47986
D9Mit334 9 53170792 to 53170915 123 DNA segment DNA Segment, Chr 9 Massachusetts Institute of Technology 334
Tssr89595 9 53178627 to 53178630 3 - TSS region transcription start site region 89595
Cpgi21750 9 53247512 to 53248430 918 CpG island CpG island 21750
Tssr89596 9 53248051 to 53248062 11 - TSS region transcription start site region 89596
Tssr89597 9 53248063 to 53248105 42 - TSS region transcription start site region 89597
Tssr89598 9 53248106 to 53248117 11 - TSS region transcription start site region 89598
Cpgi21751 9 53248847 to 53249028 181 CpG island CpG island 21751
4930510E17Rik 9 53264615 to 53280985 16370 + lincRNA gene RIKEN cDNA 4930510E17 gene
Tssr85118 9 53286050 to 53286054 4 + TSS region transcription start site region 85118
Tssr85119 9 53301506 to 53301521 15 + TSS region transcription start site region 85119
Tssr85120 9 53301571 to 53301599 28 + TSS region transcription start site region 85120
Exph5 9 53301670 to 53377514 75844 + protein coding gene exophilin 5
Cpgi21752 9 53301958 to 53302214 256 CpG island CpG island 21752
Tssr85121 9 53321731 to 53321742 11 + TSS region transcription start site region 85121
Tssr85122 9 53321745 to 53321752 7 + TSS region transcription start site region 85122
Tssr85123 9 53333202 to 53333210 8 + TSS region transcription start site region 85123
Tssr85124 9 53340631 to 53340646 15 + TSS region transcription start site region 85124
Tssr85125 9 53341060 to 53341080 20 + TSS region transcription start site region 85125
Tssr85126 9 53341082 to 53341101 19 + TSS region transcription start site region 85126
Tssr85127 9 53341209 to 53341226 17 + TSS region transcription start site region 85127
Tssr85128 9 53341227 to 53341242 15 + TSS region transcription start site region 85128
Tssr85129 9 53341254 to 53341298 44 + TSS region transcription start site region 85129
Tssr85130 9 53341341 to 53341352 11 + TSS region transcription start site region 85130
Tssr85131 9 53341806 to 53341812 6 + TSS region transcription start site region 85131
Tssr85132 9 53367642 to 53367654 12 + TSS region transcription start site region 85132
Tssr85133 9 53367679 to 53367692 13 + TSS region transcription start site region 85133
Tssr85134 9 53367734 to 53367756 22 + TSS region transcription start site region 85134
Cpgi21753 9 53383887 to 53384715 828 CpG island CpG island 21753
Tssr85135 9 53384017 to 53384030 13 + TSS region transcription start site region 85135
Poglut3 9 53384025 to 53401867 17842 + protein coding gene protein O-glucosyltransferase 3
Tssr85136 9 53384031 to 53384091 60 + TSS region transcription start site region 85136
Mir130c 9 53400805 to 53400886 81 - miRNA gene microRNA 130c
4930550C14Rik 9 53402325 to 53434402 32077 + protein coding gene RIKEN cDNA 4930550C14 gene
Cpgi21754 9 53402568 to 53402732 164 CpG island CpG island 21754
Tssr85137 9 53403249 to 53403260 11 + TSS region transcription start site region 85137
Tssr89599 9 53404525 to 53404548 23 - TSS region transcription start site region 89599
Tssr85138 9 53405280 to 53405323 43 + TSS region transcription start site region 85138
Atm 9 53439149 to 53536740 97591 - protein coding gene ataxia telangiectasia mutated
Cpgi21755 9 53536399 to 53537824 1425 CpG island CpG island 21755
Tssr89600 9 53536619 to 53536693 74 - TSS region transcription start site region 89600
Tssr89601 9 53536695 to 53536711 16 - TSS region transcription start site region 89601
Tssr89602 9 53536728 to 53536747 19 - TSS region transcription start site region 89602
Tssr89603 9 53536757 to 53536769 12 - TSS region transcription start site region 89603
Tssr85139 9 53537021 to 53537074 53 + TSS region transcription start site region 85139
Npat 9 53537047 to 53574342 37295 + protein coding gene nuclear protein in the AT region
Tssr85140 9 53537083 to 53537094 11 + TSS region transcription start site region 85140
1110050P16Rik 9 53567752 to 53569120 1368 unclassified gene RIKEN cDNA 1110050P16 gene
Gm9963 9 53574955 to 53577328 2373 unclassified gene predicted gene 9963
Acat1 9 53580522 to 53610350 29828 - protein coding gene acetyl-Coenzyme A acetyltransferase 1
Tssr89604 9 53592024 to 53592036 12 - TSS region transcription start site region 89604
Tssr89605 9 53592080 to 53592097 17 - TSS region transcription start site region 89605
Tssr89606 9 53594720 to 53594740 20 - TSS region transcription start site region 89606
Cpgi21756 9 53609961 to 53610638 677 CpG island CpG island 21756
Tssr89607 9 53610285 to 53610328 43 - TSS region transcription start site region 89607
Tssr89608 9 53610329 to 53610367 38 - TSS region transcription start site region 89608
Cul5 9 53614582 to 53667507 52925 - protein coding gene cullin 5
Tssr89609 9 53617357 to 53617362 5 - TSS region transcription start site region 89609
Tssr89610 9 53632693 to 53632704 11 - TSS region transcription start site region 89610
Gm22304 9 53639977 to 53640105 128 + snoRNA gene predicted gene, 22304
Tssr89611 9 53648717 to 53648721 4 - TSS region transcription start site region 89611
Cpgi21757 9 53666497 to 53667719 1222 CpG island CpG island 21757
Tssr89612 9 53667060 to 53667103 43 - TSS region transcription start site region 89612
Tssr85141 9 53667086 to 53667130 44 + TSS region transcription start site region 85141
Tssr85142 9 53667131 to 53667149 18 + TSS region transcription start site region 85142
Gm16124 9 53667246 to 53681265 14019 + antisense lncRNA gene predicted gene 16124
Tssr2874 9 53667407 to 53667418 11 - TSS region transcription start site region 2874
Tssr89613 9 53667429 to 53667521 92 - TSS region transcription start site region 89613
Rab39 9 53684110 to 53706232 22122 - protein coding gene RAB39, member RAS oncogene family
Rps6-ps3 9 53689534 to 53690283 749 - pseudogene ribosomal protein S6, pseudogene 3
Cpgi21758 9 53705590 to 53706707 1117 CpG island CpG island 21758
Tssr89614 9 53706211 to 53706251 40 - TSS region transcription start site region 89614
Gm48292 9 53746069 to 53748733 2664 + pseudogene predicted gene, 48292
Tssr85143 9 53771321 to 53771324 3 + TSS region transcription start site region 85143
Cpgi21759 9 53771418 to 53772437 1019 CpG island CpG island 21759
Tssr85144 9 53771499 to 53771535 36 + TSS region transcription start site region 85144
Slc35f2 9 53771538 to 53818154 46616 + protein coding gene solute carrier family 35, member F2
Tssr85145 9 53771646 to 53771663 17 + TSS region transcription start site region 85145
Tssr85146 9 53771675 to 53771687 12 + TSS region transcription start site region 85146
Tssr85147 9 53771700 to 53771782 82 + TSS region transcription start site region 85147
Tssr85148 9 53850243 to 53850257 14 + TSS region transcription start site region 85148
Sln 9 53850251 to 53853849 3598 + protein coding gene sarcolipin