Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 9:52156908-53357025

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70 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Zc3h12c 9 52111344 to 52168572 57228 - protein coding gene zinc finger CCCH type containing 12C
Tssr89576 9 52164516 to 52164524 8 - TSS region transcription start site region 89576
Tssr89577 9 52164565 to 52164576 11 - TSS region transcription start site region 89577
Tssr2873 9 52164612 to 52164624 12 - TSS region transcription start site region 2873
Tssr89578 9 52164738 to 52164769 31 - TSS region transcription start site region 89578
Tssr89579 9 52167379 to 52167382 3 - TSS region transcription start site region 89579
Cpgi21747 9 52167834 to 52169183 1349 CpG island CpG island 21747
Tssr89580 9 52168675 to 52168680 5 - TSS region transcription start site region 89580
Tssr89581 9 52168740 to 52168768 28 - TSS region transcription start site region 89581
Tssr89582 9 52168792 to 52168806 14 - TSS region transcription start site region 89582
Tssr89583 9 52168838 to 52168871 33 - TSS region transcription start site region 89583
Tssr89584 9 52168888 to 52168903 15 - TSS region transcription start site region 89584
Tssr89585 9 52172602 to 52172654 52 - TSS region transcription start site region 89585
Tssr89586 9 52172657 to 52172685 28 - TSS region transcription start site region 89586
Tssr85114 9 52172815 to 52172829 14 + TSS region transcription start site region 85114
D9Mit231 9 52285497 to 52285607 110 DNA segment DNA segment, Chr 9, Massachusetts Institute of Technology 231
Tssr89587 9 52288026 to 52288034 8 - TSS region transcription start site region 89587
Gm25562 9 52291199 to 52291331 132 + snoRNA gene predicted gene, 25562
Gm47957 9 52321896 to 52349311 27415 - lincRNA gene predicted gene, 47957
Gm47960 9 52399274 to 52401968 2694 - lincRNA gene predicted gene, 47960
Gm29692 9 52403258 to 52416443 13185 + protein coding gene predicted gene, 29692
Gm49389 9 52404299 to 52404815 516 + pseudogene predicted gene, 49389
Gm33125 9 52423576 to 52428381 4805 + lincRNA gene predicted gene, 33125
Hrtiq1 9 52514798 to 68648726 16133928 QTL heart rate time index, QTL 1
Gm33210 9 52529967 to 52574584 44617 - lncRNA gene predicted gene, 33210
Tssr85115 9 52584778 to 52584784 6 + TSS region transcription start site region 85115
AI593442 9 52673042 to 52679780 6738 - protein coding gene expressed sequence AI593442
Tssr89588 9 52676795 to 52676808 13 - TSS region transcription start site region 89588
Tssr89589 9 52677863 to 52677874 11 - TSS region transcription start site region 89589
Cpgi21748 9 52677914 to 52679053 1139 CpG island CpG island 21748
Cpgi21749 9 52679164 to 52679835 671 CpG island CpG island 21749
Tssr89590 9 52679396 to 52679426 30 - TSS region transcription start site region 89590
Tssr89591 9 52679677 to 52679686 9 - TSS region transcription start site region 89591
Tssr89592 9 52679697 to 52679717 20 - TSS region transcription start site region 89592
Tssr89593 9 52679730 to 52679787 57 - TSS region transcription start site region 89593
Tssr85116 9 52679848 to 52679859 11 + TSS region transcription start site region 85116
Gm1715 9 52679863 to 52798772 118909 + lincRNA gene predicted gene 1715
Tssr85117 9 52683080 to 52683082 2 + TSS region transcription start site region 85117
Gm22242 9 52756908 to 52757025 117 + snRNA gene predicted gene, 22242
Gm47981 9 52764011 to 52764239 228 + pseudogene predicted gene, 47981
Gm33256 9 52782770 to 52787336 4566 - lncRNA gene predicted gene, 33256
Gm39339 9 52859671 to 52876162 16491 - lncRNA gene predicted gene, 39339
4932432N04Rik 9 53070598 to 53074081 3483 unclassified gene RIKEN cDNA 4932432N04 gene
Ddx10 9 53098635 to 53248053 149418 - protein coding gene DEAD (Asp-Glu-Ala-Asp) box polypeptide 10
Tssr89594 9 53157328 to 53157340 12 - TSS region transcription start site region 89594
Gm47986 9 53164188 to 53164679 491 + pseudogene predicted gene, 47986
D9Mit334 9 53170792 to 53170915 123 DNA segment DNA Segment, Chr 9 Massachusetts Institute of Technology 334
Tssr89595 9 53178627 to 53178630 3 - TSS region transcription start site region 89595
Cpgi21750 9 53247512 to 53248430 918 CpG island CpG island 21750
Tssr89596 9 53248051 to 53248062 11 - TSS region transcription start site region 89596
Tssr89597 9 53248063 to 53248105 42 - TSS region transcription start site region 89597
Tssr89598 9 53248106 to 53248117 11 - TSS region transcription start site region 89598
Cpgi21751 9 53248847 to 53249028 181 CpG island CpG island 21751
4930510E17Rik 9 53264615 to 53280985 16370 + lincRNA gene RIKEN cDNA 4930510E17 gene
Tssr85118 9 53286050 to 53286054 4 + TSS region transcription start site region 85118
Tssr85119 9 53301506 to 53301521 15 + TSS region transcription start site region 85119
Tssr85120 9 53301571 to 53301599 28 + TSS region transcription start site region 85120
Exph5 9 53301670 to 53377514 75844 + protein coding gene exophilin 5
Cpgi21752 9 53301958 to 53302214 256 CpG island CpG island 21752
Tssr85121 9 53321731 to 53321742 11 + TSS region transcription start site region 85121
Tssr85122 9 53321745 to 53321752 7 + TSS region transcription start site region 85122
Tssr85123 9 53333202 to 53333210 8 + TSS region transcription start site region 85123
Tssr85124 9 53340631 to 53340646 15 + TSS region transcription start site region 85124
Tssr85125 9 53341060 to 53341080 20 + TSS region transcription start site region 85125
Tssr85126 9 53341082 to 53341101 19 + TSS region transcription start site region 85126
Tssr85127 9 53341209 to 53341226 17 + TSS region transcription start site region 85127
Tssr85128 9 53341227 to 53341242 15 + TSS region transcription start site region 85128
Tssr85129 9 53341254 to 53341298 44 + TSS region transcription start site region 85129
Tssr85130 9 53341341 to 53341352 11 + TSS region transcription start site region 85130
Tssr85131 9 53341806 to 53341812 6 + TSS region transcription start site region 85131