Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 9:52154274-52646968

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26 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Zc3h12c 9 52111344 to 52168572 57228 - protein coding gene zinc finger CCCH type containing 12C
Tssr89576 9 52164516 to 52164524 8 - TSS region transcription start site region 89576
Tssr89577 9 52164565 to 52164576 11 - TSS region transcription start site region 89577
Tssr2873 9 52164612 to 52164624 12 - TSS region transcription start site region 2873
Tssr89578 9 52164738 to 52164769 31 - TSS region transcription start site region 89578
Tssr89579 9 52167379 to 52167382 3 - TSS region transcription start site region 89579
Cpgi21747 9 52167834 to 52169183 1349 CpG island CpG island 21747
Tssr89580 9 52168675 to 52168680 5 - TSS region transcription start site region 89580
Tssr89581 9 52168740 to 52168768 28 - TSS region transcription start site region 89581
Tssr89582 9 52168792 to 52168806 14 - TSS region transcription start site region 89582
Tssr89583 9 52168838 to 52168871 33 - TSS region transcription start site region 89583
Tssr89584 9 52168888 to 52168903 15 - TSS region transcription start site region 89584
Tssr89585 9 52172602 to 52172654 52 - TSS region transcription start site region 89585
Tssr89586 9 52172657 to 52172685 28 - TSS region transcription start site region 89586
Tssr85114 9 52172815 to 52172829 14 + TSS region transcription start site region 85114
D9Mit231 9 52285497 to 52285607 110 DNA segment DNA segment, Chr 9, Massachusetts Institute of Technology 231
Tssr89587 9 52288026 to 52288034 8 - TSS region transcription start site region 89587
Gm25562 9 52291199 to 52291331 132 + snoRNA gene predicted gene, 25562
Gm47957 9 52321896 to 52349311 27415 - lincRNA gene predicted gene, 47957
Gm47960 9 52399274 to 52401968 2694 - lincRNA gene predicted gene, 47960
Gm29692 9 52403258 to 52416443 13185 + protein coding gene predicted gene, 29692
Gm49389 9 52404299 to 52404815 516 + pseudogene predicted gene, 49389
Gm33125 9 52423576 to 52428381 4805 + lincRNA gene predicted gene, 33125
Hrtiq1 9 52514798 to 68648726 16133928 QTL heart rate time index, QTL 1
Gm33210 9 52529967 to 52574584 44617 - lncRNA gene predicted gene, 33210
Tssr85115 9 52584778 to 52584784 6 + TSS region transcription start site region 85115