Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 9:52088026-52488034

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43 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Rdx 9 52047173 to 52088735 41562 + protein coding gene radixin
Tssr85111 9 52088236 to 52088275 39 + TSS region transcription start site region 85111
Gm27686 9 52103689 to 52103779 90 - miRNA gene predicted gene, 27686
Tssr85112 9 52104236 to 52104260 24 + TSS region transcription start site region 85112
Tssr89567 9 52110965 to 52110969 4 - TSS region transcription start site region 89567
Zc3h12c 9 52111344 to 52168572 57228 - protein coding gene zinc finger CCCH type containing 12C
Tssr89568 9 52112982 to 52113019 37 - TSS region transcription start site region 89568
Tssr85113 9 52115143 to 52115144 1 + TSS region transcription start site region 85113
Mir6244 9 52115623 to 52115739 116 + miRNA gene microRNA 6244
D9Mit4 9 52123178 to 52123299 121 DNA segment DNA segment, Chr 9, Massachusetts Institute of Technology 4
Tbdr1 9 52123178 to 52123299 121 QTL body temperature response to dietary restriction, QTL 1
Renf1 9 52123178 to 99910428 47787250 QTL renal failure 1
Cocrb8 9 52123178 to 52123299 121 QTL cocaine related behavior 8
Etohc3 9 52123178 to 52123299 121 QTL ethanol consumption 3
Tssr89569 9 52125471 to 52125483 12 - TSS region transcription start site region 89569
Tssr89570 9 52127864 to 52127877 13 - TSS region transcription start site region 89570
Tssr89571 9 52141629 to 52141647 18 - TSS region transcription start site region 89571
Tssr89572 9 52141730 to 52141747 17 - TSS region transcription start site region 89572
Tssr89573 9 52141752 to 52141764 12 - TSS region transcription start site region 89573
Tssr89574 9 52143920 to 52143932 12 - TSS region transcription start site region 89574
Tssr89575 9 52149351 to 52149372 21 - TSS region transcription start site region 89575
Tssr89576 9 52164516 to 52164524 8 - TSS region transcription start site region 89576
Tssr89577 9 52164565 to 52164576 11 - TSS region transcription start site region 89577
Tssr2873 9 52164612 to 52164624 12 - TSS region transcription start site region 2873
Tssr89578 9 52164738 to 52164769 31 - TSS region transcription start site region 89578
Tssr89579 9 52167379 to 52167382 3 - TSS region transcription start site region 89579
Cpgi21747 9 52167834 to 52169183 1349 CpG island CpG island 21747
Tssr89580 9 52168675 to 52168680 5 - TSS region transcription start site region 89580
Tssr89581 9 52168740 to 52168768 28 - TSS region transcription start site region 89581
Tssr89582 9 52168792 to 52168806 14 - TSS region transcription start site region 89582
Tssr89583 9 52168838 to 52168871 33 - TSS region transcription start site region 89583
Tssr89584 9 52168888 to 52168903 15 - TSS region transcription start site region 89584
Tssr89585 9 52172602 to 52172654 52 - TSS region transcription start site region 89585
Tssr89586 9 52172657 to 52172685 28 - TSS region transcription start site region 89586
Tssr85114 9 52172815 to 52172829 14 + TSS region transcription start site region 85114
D9Mit231 9 52285497 to 52285607 110 DNA segment DNA segment, Chr 9, Massachusetts Institute of Technology 231
Tssr89587 9 52288026 to 52288034 8 - TSS region transcription start site region 89587
Gm25562 9 52291199 to 52291331 132 + snoRNA gene predicted gene, 25562
Gm47957 9 52321896 to 52349311 27415 - lincRNA gene predicted gene, 47957
Gm47960 9 52399274 to 52401968 2694 - lincRNA gene predicted gene, 47960
Gm29692 9 52403258 to 52416443 13185 + protein coding gene predicted gene, 29692
Gm49389 9 52404299 to 52404815 516 + pseudogene predicted gene, 49389
Gm33125 9 52423576 to 52428381 4805 + lincRNA gene predicted gene, 33125