Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 9:52056700-55486782

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374 genes found. Result truncated to 200 rows.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Adip20b 9 48789608 to 53884418 5094810 QTL adiposity 20b
Rdx 9 52047173 to 52088735 41562 + protein coding gene radixin
Tssr85106 9 52060830 to 52060835 5 + TSS region transcription start site region 85106
Tssr85107 9 52067393 to 52067408 15 + TSS region transcription start site region 85107
Tssr85108 9 52068210 to 52068249 39 + TSS region transcription start site region 85108
Tssr85109 9 52069696 to 52069709 13 + TSS region transcription start site region 85109
Tssr85110 9 52069745 to 52069755 10 + TSS region transcription start site region 85110
Gm33614 9 52077590 to 52080334 2744 - pseudogene predicted gene, 33614
Tssr85111 9 52088236 to 52088275 39 + TSS region transcription start site region 85111
Gm27686 9 52103689 to 52103779 90 - miRNA gene predicted gene, 27686
Tssr85112 9 52104236 to 52104260 24 + TSS region transcription start site region 85112
Tssr89567 9 52110965 to 52110969 4 - TSS region transcription start site region 89567
Zc3h12c 9 52111344 to 52168572 57228 - protein coding gene zinc finger CCCH type containing 12C
Tssr89568 9 52112982 to 52113019 37 - TSS region transcription start site region 89568
Tssr85113 9 52115143 to 52115144 1 + TSS region transcription start site region 85113
Mir6244 9 52115623 to 52115739 116 + miRNA gene microRNA 6244
Etohc3 9 52123178 to 52123299 121 QTL ethanol consumption 3
Tbdr1 9 52123178 to 52123299 121 QTL body temperature response to dietary restriction, QTL 1
Renf1 9 52123178 to 99910428 47787250 QTL renal failure 1
Cocrb8 9 52123178 to 52123299 121 QTL cocaine related behavior 8
D9Mit4 9 52123178 to 52123299 121 DNA segment DNA segment, Chr 9, Massachusetts Institute of Technology 4
Tssr89569 9 52125471 to 52125483 12 - TSS region transcription start site region 89569
Tssr89570 9 52127864 to 52127877 13 - TSS region transcription start site region 89570
Tssr89571 9 52141629 to 52141647 18 - TSS region transcription start site region 89571
Tssr89572 9 52141730 to 52141747 17 - TSS region transcription start site region 89572
Tssr89573 9 52141752 to 52141764 12 - TSS region transcription start site region 89573
Tssr89574 9 52143920 to 52143932 12 - TSS region transcription start site region 89574
Tssr89575 9 52149351 to 52149372 21 - TSS region transcription start site region 89575
Tssr89576 9 52164516 to 52164524 8 - TSS region transcription start site region 89576
Tssr89577 9 52164565 to 52164576 11 - TSS region transcription start site region 89577
Tssr2873 9 52164612 to 52164624 12 - TSS region transcription start site region 2873
Tssr89578 9 52164738 to 52164769 31 - TSS region transcription start site region 89578
Tssr89579 9 52167379 to 52167382 3 - TSS region transcription start site region 89579
Cpgi21747 9 52167834 to 52169183 1349 CpG island CpG island 21747
Tssr89580 9 52168675 to 52168680 5 - TSS region transcription start site region 89580
Tssr89581 9 52168740 to 52168768 28 - TSS region transcription start site region 89581
Tssr89582 9 52168792 to 52168806 14 - TSS region transcription start site region 89582
Tssr89583 9 52168838 to 52168871 33 - TSS region transcription start site region 89583
Tssr89584 9 52168888 to 52168903 15 - TSS region transcription start site region 89584
Tssr89585 9 52172602 to 52172654 52 - TSS region transcription start site region 89585
Tssr89586 9 52172657 to 52172685 28 - TSS region transcription start site region 89586
Tssr85114 9 52172815 to 52172829 14 + TSS region transcription start site region 85114
D9Mit231 9 52285497 to 52285607 110 DNA segment DNA segment, Chr 9, Massachusetts Institute of Technology 231
Tssr89587 9 52288026 to 52288034 8 - TSS region transcription start site region 89587
Gm25562 9 52291199 to 52291331 132 + snoRNA gene predicted gene, 25562
Gm47957 9 52321896 to 52349311 27415 - lincRNA gene predicted gene, 47957
Gm47960 9 52399274 to 52401968 2694 - lincRNA gene predicted gene, 47960
Gm29692 9 52403258 to 52416443 13185 + protein coding gene predicted gene, 29692
Gm49389 9 52404299 to 52404815 516 + pseudogene predicted gene, 49389
Gm33125 9 52423576 to 52428381 4805 + lincRNA gene predicted gene, 33125
Hrtiq1 9 52514798 to 68648726 16133928 QTL heart rate time index, QTL 1
Gm33210 9 52529967 to 52574584 44617 - lncRNA gene predicted gene, 33210
Tssr85115 9 52584778 to 52584784 6 + TSS region transcription start site region 85115
AI593442 9 52673042 to 52679780 6738 - protein coding gene expressed sequence AI593442
Tssr89588 9 52676795 to 52676808 13 - TSS region transcription start site region 89588
Tssr89589 9 52677863 to 52677874 11 - TSS region transcription start site region 89589
Cpgi21748 9 52677914 to 52679053 1139 CpG island CpG island 21748
Cpgi21749 9 52679164 to 52679835 671 CpG island CpG island 21749
Tssr89590 9 52679396 to 52679426 30 - TSS region transcription start site region 89590
Tssr89591 9 52679677 to 52679686 9 - TSS region transcription start site region 89591
Tssr89592 9 52679697 to 52679717 20 - TSS region transcription start site region 89592
Tssr89593 9 52679730 to 52679787 57 - TSS region transcription start site region 89593
Tssr85116 9 52679848 to 52679859 11 + TSS region transcription start site region 85116
Gm1715 9 52679863 to 52798772 118909 + lincRNA gene predicted gene 1715
Tssr85117 9 52683080 to 52683082 2 + TSS region transcription start site region 85117
Gm22242 9 52756908 to 52757025 117 + snRNA gene predicted gene, 22242
Gm47981 9 52764011 to 52764239 228 + pseudogene predicted gene, 47981
Gm33256 9 52782770 to 52787336 4566 - lncRNA gene predicted gene, 33256
Gm39339 9 52859671 to 52876162 16491 - lncRNA gene predicted gene, 39339
4932432N04Rik 9 53070598 to 53074081 3483 unclassified gene RIKEN cDNA 4932432N04 gene
Ddx10 9 53098635 to 53248053 149418 - protein coding gene DEAD (Asp-Glu-Ala-Asp) box polypeptide 10
Tssr89594 9 53157328 to 53157340 12 - TSS region transcription start site region 89594
Gm47986 9 53164188 to 53164679 491 + pseudogene predicted gene, 47986
D9Mit334 9 53170792 to 53170915 123 DNA segment DNA Segment, Chr 9 Massachusetts Institute of Technology 334
Tssr89595 9 53178627 to 53178630 3 - TSS region transcription start site region 89595
Cpgi21750 9 53247512 to 53248430 918 CpG island CpG island 21750
Tssr89596 9 53248051 to 53248062 11 - TSS region transcription start site region 89596
Tssr89597 9 53248063 to 53248105 42 - TSS region transcription start site region 89597
Tssr89598 9 53248106 to 53248117 11 - TSS region transcription start site region 89598
Cpgi21751 9 53248847 to 53249028 181 CpG island CpG island 21751
4930510E17Rik 9 53264615 to 53280985 16370 + lincRNA gene RIKEN cDNA 4930510E17 gene
Tssr85118 9 53286050 to 53286054 4 + TSS region transcription start site region 85118
Tssr85119 9 53301506 to 53301521 15 + TSS region transcription start site region 85119
Tssr85120 9 53301571 to 53301599 28 + TSS region transcription start site region 85120
Exph5 9 53301670 to 53377514 75844 + protein coding gene exophilin 5
Cpgi21752 9 53301958 to 53302214 256 CpG island CpG island 21752
Tssr85121 9 53321731 to 53321742 11 + TSS region transcription start site region 85121
Tssr85122 9 53321745 to 53321752 7 + TSS region transcription start site region 85122
Tssr85123 9 53333202 to 53333210 8 + TSS region transcription start site region 85123
Tssr85124 9 53340631 to 53340646 15 + TSS region transcription start site region 85124
Tssr85125 9 53341060 to 53341080 20 + TSS region transcription start site region 85125
Tssr85126 9 53341082 to 53341101 19 + TSS region transcription start site region 85126
Tssr85127 9 53341209 to 53341226 17 + TSS region transcription start site region 85127
Tssr85128 9 53341227 to 53341242 15 + TSS region transcription start site region 85128
Tssr85129 9 53341254 to 53341298 44 + TSS region transcription start site region 85129
Tssr85130 9 53341341 to 53341352 11 + TSS region transcription start site region 85130
Tssr85131 9 53341806 to 53341812 6 + TSS region transcription start site region 85131
Tssr85132 9 53367642 to 53367654 12 + TSS region transcription start site region 85132
Tssr85133 9 53367679 to 53367692 13 + TSS region transcription start site region 85133
Tssr85134 9 53367734 to 53367756 22 + TSS region transcription start site region 85134
Cpgi21753 9 53383887 to 53384715 828 CpG island CpG island 21753
Tssr85135 9 53384017 to 53384030 13 + TSS region transcription start site region 85135
Poglut3 9 53384025 to 53401867 17842 + protein coding gene protein O-glucosyltransferase 3
Tssr85136 9 53384031 to 53384091 60 + TSS region transcription start site region 85136
Mir130c 9 53400805 to 53400886 81 - miRNA gene microRNA 130c
4930550C14Rik 9 53402325 to 53434402 32077 + protein coding gene RIKEN cDNA 4930550C14 gene
Cpgi21754 9 53402568 to 53402732 164 CpG island CpG island 21754
Tssr85137 9 53403249 to 53403260 11 + TSS region transcription start site region 85137
Tssr89599 9 53404525 to 53404548 23 - TSS region transcription start site region 89599
Tssr85138 9 53405280 to 53405323 43 + TSS region transcription start site region 85138
Atm 9 53439149 to 53536740 97591 - protein coding gene ataxia telangiectasia mutated
Cpgi21755 9 53536399 to 53537824 1425 CpG island CpG island 21755
Tssr89600 9 53536619 to 53536693 74 - TSS region transcription start site region 89600
Tssr89601 9 53536695 to 53536711 16 - TSS region transcription start site region 89601
Tssr89602 9 53536728 to 53536747 19 - TSS region transcription start site region 89602
Tssr89603 9 53536757 to 53536769 12 - TSS region transcription start site region 89603
Tssr85139 9 53537021 to 53537074 53 + TSS region transcription start site region 85139
Npat 9 53537047 to 53574342 37295 + protein coding gene nuclear protein in the AT region
Tssr85140 9 53537083 to 53537094 11 + TSS region transcription start site region 85140
1110050P16Rik 9 53567752 to 53569120 1368 unclassified gene RIKEN cDNA 1110050P16 gene
Gm9963 9 53574955 to 53577328 2373 unclassified gene predicted gene 9963
Acat1 9 53580522 to 53610350 29828 - protein coding gene acetyl-Coenzyme A acetyltransferase 1
Tssr89604 9 53592024 to 53592036 12 - TSS region transcription start site region 89604
Tssr89605 9 53592080 to 53592097 17 - TSS region transcription start site region 89605
Tssr89606 9 53594720 to 53594740 20 - TSS region transcription start site region 89606
Cpgi21756 9 53609961 to 53610638 677 CpG island CpG island 21756
Tssr89607 9 53610285 to 53610328 43 - TSS region transcription start site region 89607
Tssr89608 9 53610329 to 53610367 38 - TSS region transcription start site region 89608
Cul5 9 53614582 to 53667507 52925 - protein coding gene cullin 5
Tssr89609 9 53617357 to 53617362 5 - TSS region transcription start site region 89609
Tssr89610 9 53632693 to 53632704 11 - TSS region transcription start site region 89610
Gm22304 9 53639977 to 53640105 128 + snoRNA gene predicted gene, 22304
Tssr89611 9 53648717 to 53648721 4 - TSS region transcription start site region 89611
Cpgi21757 9 53666497 to 53667719 1222 CpG island CpG island 21757
Tssr89612 9 53667060 to 53667103 43 - TSS region transcription start site region 89612
Tssr85141 9 53667086 to 53667130 44 + TSS region transcription start site region 85141
Tssr85142 9 53667131 to 53667149 18 + TSS region transcription start site region 85142
Gm16124 9 53667246 to 53681265 14019 + antisense lncRNA gene predicted gene 16124
Tssr2874 9 53667407 to 53667418 11 - TSS region transcription start site region 2874
Tssr89613 9 53667429 to 53667521 92 - TSS region transcription start site region 89613
Rab39 9 53684110 to 53706232 22122 - protein coding gene RAB39, member RAS oncogene family
Rps6-ps3 9 53689534 to 53690283 749 - pseudogene ribosomal protein S6, pseudogene 3
Cpgi21758 9 53705590 to 53706707 1117 CpG island CpG island 21758
Tssr89614 9 53706211 to 53706251 40 - TSS region transcription start site region 89614
Gm48292 9 53746069 to 53748733 2664 + pseudogene predicted gene, 48292
Tssr85143 9 53771321 to 53771324 3 + TSS region transcription start site region 85143
Cpgi21759 9 53771418 to 53772437 1019 CpG island CpG island 21759
Tssr85144 9 53771499 to 53771535 36 + TSS region transcription start site region 85144
Slc35f2 9 53771538 to 53818154 46616 + protein coding gene solute carrier family 35, member F2
Tssr85145 9 53771646 to 53771663 17 + TSS region transcription start site region 85145
Tssr85146 9 53771675 to 53771687 12 + TSS region transcription start site region 85146
Tssr85147 9 53771700 to 53771782 82 + TSS region transcription start site region 85147
Tssr85148 9 53850243 to 53850257 14 + TSS region transcription start site region 85148
Sln 9 53850251 to 53853849 3598 + protein coding gene sarcolipin
Gm16380 9 53884084 to 53884561 477 + pseudogene predicted pseudogene 16380
Cpgi21760 9 53884392 to 53884595 203 CpG island CpG island 21760
Gm39340 9 53899252 to 53901589 2337 + lncRNA gene predicted gene, 39340
Elmod1 9 53911457 to 53975301 63844 - protein coding gene ELMO/CED-12 domain containing 1
Tssr89615 9 53912813 to 53912817 4 - TSS region transcription start site region 89615
Tssr89616 9 53936090 to 53936097 7 - TSS region transcription start site region 89616
Tssr89617 9 53936100 to 53936105 5 - TSS region transcription start site region 89617
Cpgi21761 9 53974522 to 53975502 980 CpG island CpG island 21761
Tssr89618 9 53975097 to 53975115 18 - TSS region transcription start site region 89618
Tssr89619 9 53975120 to 53975202 82 - TSS region transcription start site region 89619
Tssr89620 9 53975246 to 53975348 102 - TSS region transcription start site region 89620
Tssr89621 9 53975352 to 53975363 11 - TSS region transcription start site region 89621
Tnfaip8l3 9 54025606 to 54068411 42805 - protein coding gene tumor necrosis factor, alpha-induced protein 8-like 3
Gm48346 9 54043312 to 54047798 4486 + lincRNA gene predicted gene, 48346
Gm48345 9 54046615 to 54046783 168 + pseudogene predicted gene, 48345
Cpgi21762 9 54067875 to 54068470 595 CpG island CpG island 21762
Tssr89622 9 54068346 to 54068416 70 - TSS region transcription start site region 89622
Tssr89623 9 54068469 to 54068512 43 - TSS region transcription start site region 89623
Tssr89624 9 54068561 to 54068569 8 - TSS region transcription start site region 89624
Cyp19a1 9 54165859 to 54229532 63673 - protein coding gene cytochrome P450, family 19, subfamily a, polypeptide 1
Cpgi21763 9 54180212 to 54180492 280 CpG island CpG island 21763
Tssr89625 9 54183303 to 54183310 7 - TSS region transcription start site region 89625
Tssr89626 9 54193519 to 54193523 4 - TSS region transcription start site region 89626
Tssr89627 9 54209940 to 54209944 4 - TSS region transcription start site region 89627
Tssr89628 9 54218044 to 54218047 3 - TSS region transcription start site region 89628
Tssr89629 9 54223793 to 54223796 3 - TSS region transcription start site region 89629
Tssr89630 9 54237259 to 54237266 7 - TSS region transcription start site region 89630
Adip20c 9 54242579 to 54286770 44191 QTL adiposity 20c
Tssr89631 9 54249817 to 54249829 12 - TSS region transcription start site region 89631
Tssr85149 9 54249906 to 54249927 21 + TSS region transcription start site region 85149
Tssr85150 9 54262340 to 54262341 1 + TSS region transcription start site region 85150
Tssr85151 9 54266103 to 54266127 24 + TSS region transcription start site region 85151
Gldnos 9 54268580 to 54301570 32990 - antisense lncRNA gene gliomedin, opposite strand
Cpgi21764 9 54286275 to 54287062 787 CpG island CpG island 21764
Tssr85152 9 54286332 to 54286343 11 + TSS region transcription start site region 85152
Tssr85153 9 54286389 to 54286398 9 + TSS region transcription start site region 85153
Tssr85154 9 54286479 to 54286494 15 + TSS region transcription start site region 85154
Gldn 9 54286486 to 54341777 55291 + protein coding gene gliomedin
Tssr85155 9 54328943 to 54328947 4 + TSS region transcription start site region 85155
Dmxl2 9 54365158 to 54501626 136468 - protein coding gene Dmx-like 2
Tssr89632 9 54392746 to 54392752 6 - TSS region transcription start site region 89632
Tssr89633 9 54415832 to 54415852 20 - TSS region transcription start site region 89633
Tssr89634 9 54419595 to 54419619 24 - TSS region transcription start site region 89634
Tssr89635 9 54424586 to 54424591 5 - TSS region transcription start site region 89635
Tssr89636 9 54434963 to 54434968 5 - TSS region transcription start site region 89636
Tssr85156 9 54467735 to 54467738 3 + TSS region transcription start site region 85156