Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.



Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 9:51843306-52063556

42 genes found.

Gene symbol	Chromo- some	Coordinates (bp, mm10)	Size (bp)	Strand	Feature Type	Gene name
Tdmq1	9	40508298 to 51897370	11389072		QTL	type 2 diabetes modifying QTL 1
Arhgap20	9	51765352 to 51853059	87707	+	protein coding gene	Rho GTPase activating protein 20
Arhgap20os	9	51839493 to 51875885	36392	-	antisense lncRNA gene	Rho GTPase activating protein 20, opposite strand
Tssr85094	9	51853529 to 51853540	11	+	TSS region	transcription start site region 85094
Tssr89550	9	51875879 to 51875887	8	-	TSS region	transcription start site region 89550
D9Mit1006	9	51897240 to 51897370	130		DNA segment	DNA segment, Chr 9, Massachusetts Institute of Technology 1006
Tssr85095	9	51914421 to 51914434	13	+	TSS region	transcription start site region 85095
4933407I05Rik	9	51914429 to 51927003	12574	+	lincRNA gene	RIKEN cDNA 4933407I05 gene
Tssr85096	9	51914439 to 51914467	28	+	TSS region	transcription start site region 85096
Gm6980	9	51915912 to 51924610	8698	-	lincRNA gene	predicted gene 6980
Fdx1	9	51943306 to 51963556	20250	-	protein coding gene	ferredoxin 1
Tssr89551	9	51943371 to 51943375	4	-	TSS region	transcription start site region 89551
Tssr89552	9	51945843 to 51945846	3	-	TSS region	transcription start site region 89552
Tssr89553	9	51956933 to 51956936	3	-	TSS region	transcription start site region 89553
Cpgi21745	9	51962889 to 51963801	912		CpG island	CpG island 21745
Tssr85097	9	51962905 to 51962917	12	+	TSS region	transcription start site region 85097
Tssr89554	9	51963404 to 51963425	21	-	TSS region	transcription start site region 89554
Tssr89555	9	51963470 to 51963525	55	-	TSS region	transcription start site region 89555
Tssr89556	9	51963548 to 51963563	15	-	TSS region	transcription start site region 89556
Tssr89557	9	51963609 to 51963616	7	-	TSS region	transcription start site region 89557
Tssr89558	9	51974807 to 51974812	5	-	TSS region	transcription start site region 89558
Gm6981	9	52002274 to 52003281	1007	-	pseudogene	predicted pseudogene 6981
Tssr85098	9	52047152 to 52047163	11	+	TSS region	transcription start site region 85098
Rdx	9	52047173 to 52088735	41562	+	protein coding gene	radixin
Cpgi21746	9	52047725 to 52049204	1479		CpG island	CpG island 21746
Tssr85099	9	52047931 to 52047961	30	+	TSS region	transcription start site region 85099
Tssr85100	9	52047967 to 52047990	23	+	TSS region	transcription start site region 85100
Tssr85101	9	52048001 to 52048030	29	+	TSS region	transcription start site region 85101
Tssr2872	9	52048156 to 52048202	46	+	TSS region	transcription start site region 2872
Tssr85102	9	52048234 to 52048245	11	+	TSS region	transcription start site region 85102
Tssr85103	9	52048246 to 52048319	73	+	TSS region	transcription start site region 85103
Tssr89559	9	52048671 to 52048678	7	-	TSS region	transcription start site region 89559
Tssr89560	9	52048685 to 52048696	11	-	TSS region	transcription start site region 89560
Tssr89561	9	52048699 to 52048712	13	-	TSS region	transcription start site region 89561
Tssr89562	9	52048714 to 52048732	18	-	TSS region	transcription start site region 89562
Tssr89563	9	52048748 to 52048759	11	-	TSS region	transcription start site region 89563
Tssr89564	9	52048764 to 52048779	15	-	TSS region	transcription start site region 89564
Tssr89565	9	52048793 to 52048800	7	-	TSS region	transcription start site region 89565
Tssr89566	9	52048841 to 52048850	9	-	TSS region	transcription start site region 89566
Tssr85104	9	52048902 to 52048912	10	+	TSS region	transcription start site region 85104
Tssr85105	9	52049435 to 52049442	7	+	TSS region	transcription start site region 85105
Tssr85106	9	52060830 to 52060835	5	+	TSS region	transcription start site region 85106