Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 9:51650879-52100887

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57 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Tdmq1 9 40508298 to 51897370 11389072 QTL type 2 diabetes modifying QTL 1
Gm47854 9 51621425 to 51655127 33702 - lincRNA gene predicted gene, 47854
Tssr85090 9 51656862 to 51656863 1 + TSS region transcription start site region 85090
Gm8959 9 51656891 to 51657461 570 + pseudogene predicted gene 8959
Gm40520 9 51752624 to 51765186 12562 - lncRNA gene predicted gene, 40520
Cpgi21743 9 51764686 to 51766238 1552 CpG island CpG island 21743
Tssr85091 9 51765304 to 51765317 13 + TSS region transcription start site region 85091
Tssr85092 9 51765325 to 51765364 39 + TSS region transcription start site region 85092
Arhgap20 9 51765352 to 51853059 87707 + protein coding gene Rho GTPase activating protein 20
Tssr85093 9 51765418 to 51765425 7 + TSS region transcription start site region 85093
Cpgi21744 9 51766629 to 51766784 155 CpG island CpG island 21744
Arhgap20os 9 51839493 to 51875885 36392 - antisense lncRNA gene Rho GTPase activating protein 20, opposite strand
Tssr85094 9 51853529 to 51853540 11 + TSS region transcription start site region 85094
Tssr89550 9 51875879 to 51875887 8 - TSS region transcription start site region 89550
D9Mit1006 9 51897240 to 51897370 130 DNA segment DNA segment, Chr 9, Massachusetts Institute of Technology 1006
Tssr85095 9 51914421 to 51914434 13 + TSS region transcription start site region 85095
4933407I05Rik 9 51914429 to 51927003 12574 + lincRNA gene RIKEN cDNA 4933407I05 gene
Tssr85096 9 51914439 to 51914467 28 + TSS region transcription start site region 85096
Gm6980 9 51915912 to 51924610 8698 - lincRNA gene predicted gene 6980
Fdx1 9 51943306 to 51963556 20250 - protein coding gene ferredoxin 1
Tssr89551 9 51943371 to 51943375 4 - TSS region transcription start site region 89551
Tssr89552 9 51945843 to 51945846 3 - TSS region transcription start site region 89552
Tssr89553 9 51956933 to 51956936 3 - TSS region transcription start site region 89553
Cpgi21745 9 51962889 to 51963801 912 CpG island CpG island 21745
Tssr85097 9 51962905 to 51962917 12 + TSS region transcription start site region 85097
Tssr89554 9 51963404 to 51963425 21 - TSS region transcription start site region 89554
Tssr89555 9 51963470 to 51963525 55 - TSS region transcription start site region 89555
Tssr89556 9 51963548 to 51963563 15 - TSS region transcription start site region 89556
Tssr89557 9 51963609 to 51963616 7 - TSS region transcription start site region 89557
Tssr89558 9 51974807 to 51974812 5 - TSS region transcription start site region 89558
Gm6981 9 52002274 to 52003281 1007 - pseudogene predicted pseudogene 6981
Tssr85098 9 52047152 to 52047163 11 + TSS region transcription start site region 85098
Rdx 9 52047173 to 52088735 41562 + protein coding gene radixin
Cpgi21746 9 52047725 to 52049204 1479 CpG island CpG island 21746
Tssr85099 9 52047931 to 52047961 30 + TSS region transcription start site region 85099
Tssr85100 9 52047967 to 52047990 23 + TSS region transcription start site region 85100
Tssr85101 9 52048001 to 52048030 29 + TSS region transcription start site region 85101
Tssr2872 9 52048156 to 52048202 46 + TSS region transcription start site region 2872
Tssr85102 9 52048234 to 52048245 11 + TSS region transcription start site region 85102
Tssr85103 9 52048246 to 52048319 73 + TSS region transcription start site region 85103
Tssr89559 9 52048671 to 52048678 7 - TSS region transcription start site region 89559
Tssr89560 9 52048685 to 52048696 11 - TSS region transcription start site region 89560
Tssr89561 9 52048699 to 52048712 13 - TSS region transcription start site region 89561
Tssr89562 9 52048714 to 52048732 18 - TSS region transcription start site region 89562
Tssr89563 9 52048748 to 52048759 11 - TSS region transcription start site region 89563
Tssr89564 9 52048764 to 52048779 15 - TSS region transcription start site region 89564
Tssr89565 9 52048793 to 52048800 7 - TSS region transcription start site region 89565
Tssr89566 9 52048841 to 52048850 9 - TSS region transcription start site region 89566
Tssr85104 9 52048902 to 52048912 10 + TSS region transcription start site region 85104
Tssr85105 9 52049435 to 52049442 7 + TSS region transcription start site region 85105
Tssr85106 9 52060830 to 52060835 5 + TSS region transcription start site region 85106
Tssr85107 9 52067393 to 52067408 15 + TSS region transcription start site region 85107
Tssr85108 9 52068210 to 52068249 39 + TSS region transcription start site region 85108
Tssr85109 9 52069696 to 52069709 13 + TSS region transcription start site region 85109
Tssr85110 9 52069745 to 52069755 10 + TSS region transcription start site region 85110
Gm33614 9 52077590 to 52080334 2744 - pseudogene predicted gene, 33614
Tssr85111 9 52088236 to 52088275 39 + TSS region transcription start site region 85111