Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 9:51226297-51876421

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33 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Tglq7 9 50200000 to 51600000 1400000 QTL triglyceride QTL 7
Pou2af1 9 51213708 to 51240080 26372 + protein coding gene POU domain, class 2, associating factor 1
Colca2 9 51270258 to 51278569 8311 - protein coding gene COLCA2 homolog
Tssr85086 9 51272886 to 51272891 5 + TSS region transcription start site region 85086
Tssr85087 9 51273800 to 51273816 16 + TSS region transcription start site region 85087
Tssr85088 9 51273823 to 51273836 13 + TSS region transcription start site region 85088
2010007H06Rik 9 51273942 to 51277602 3660 + antisense lncRNA gene RIKEN cDNA 2010007H06 gene
Tssr89546 9 51274896 to 51274911 15 - TSS region transcription start site region 89546
Cpgi21741 9 51278451 to 51279445 994 CpG island CpG island 21741
Tssr89547 9 51278540 to 51278576 36 - TSS region transcription start site region 89547
Gm32819 9 51278990 to 51300421 21431 + lncRNA gene predicted gene, 32819
1810046K07Rik 9 51289686 to 51328917 39231 - protein coding gene RIKEN cDNA 1810046K07 gene
Cpgi21742 9 51291474 to 51291755 281 CpG island CpG island 21742
Gm39338 9 51313036 to 51370839 57803 + lncRNA gene predicted gene, 39338
Tssr85089 9 51315893 to 51315899 6 + TSS region transcription start site region 85089
Tssr89548 9 51318360 to 51318379 19 - TSS region transcription start site region 89548
Tssr89549 9 51328898 to 51328923 25 - TSS region transcription start site region 89549
Tssr2871 9 51433296 to 51433301 5 + TSS region transcription start site region 2871
D9Mit230 9 51551297 to 51551421 124 DNA segment DNA segment, Chr 9, Massachusetts Institute of Technology 230
Gm47854 9 51621425 to 51655127 33702 - lincRNA gene predicted gene, 47854
Gm7293 9 51622745 to 51623751 1006 + pseudogene predicted gene 7293
Tssr85090 9 51656862 to 51656863 1 + TSS region transcription start site region 85090
Gm8959 9 51656891 to 51657461 570 + pseudogene predicted gene 8959
Gm40520 9 51752624 to 51765186 12562 - lncRNA gene predicted gene, 40520
Cpgi21743 9 51764686 to 51766238 1552 CpG island CpG island 21743
Tssr85091 9 51765304 to 51765317 13 + TSS region transcription start site region 85091
Tssr85092 9 51765325 to 51765364 39 + TSS region transcription start site region 85092
Arhgap20 9 51765352 to 51853059 87707 + protein coding gene Rho GTPase activating protein 20
Tssr85093 9 51765418 to 51765425 7 + TSS region transcription start site region 85093
Cpgi21744 9 51766629 to 51766784 155 CpG island CpG island 21744
Arhgap20os 9 51839493 to 51875885 36392 - antisense lncRNA gene Rho GTPase activating protein 20, opposite strand
Tssr85094 9 51853529 to 51853540 11 + TSS region transcription start site region 85094
Tssr89550 9 51875879 to 51875887 8 - TSS region transcription start site region 89550