Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 9:51101297-52001421

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81 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Tdmq1 9 40508298 to 51897370 11389072 QTL type 2 diabetes modifying QTL 1
Tglq7 9 50200000 to 51600000 1400000 QTL triglyceride QTL 7
4833427G06Rik 9 51081313 to 51102078 20765 - protein coding gene RIKEN cDNA 4833427G06 gene
Cpgi21739 9 51101752 to 51102132 380 CpG island CpG island 21739
Tssr89532 9 51101780 to 51101790 10 - TSS region transcription start site region 89532
Tssr89533 9 51101896 to 51101934 38 - TSS region transcription start site region 89533
Tssr89534 9 51102035 to 51102044 9 - TSS region transcription start site region 89534
Tssr89535 9 51102047 to 51102056 9 - TSS region transcription start site region 89535
Tssr89536 9 51102062 to 51102085 23 - TSS region transcription start site region 89536
Tssr89537 9 51102126 to 51102131 5 - TSS region transcription start site region 89537
Btg4 9 51102265 to 51119700 17435 + protein coding gene B cell translocation gene 4
Mir34c 9 51103034 to 51103110 76 - miRNA gene microRNA 34c
Mirc21 9 51103034 to 51103645 611 complex/cluster/region microRNA cluster 21, including Mir34c through Mir34b
Cpgi21740 9 51103344 to 51103981 637 CpG island CpG island 21740
Mir34b 9 51103562 to 51103645 83 - miRNA gene microRNA 34b
Tssr89538 9 51103981 to 51103994 13 - TSS region transcription start site region 89538
Tssr89539 9 51105832 to 51105851 19 - TSS region transcription start site region 89539
Tssr89540 9 51105874 to 51105888 14 - TSS region transcription start site region 89540
Tssr85079 9 51115999 to 51116006 7 + TSS region transcription start site region 85079
Gm32742 9 51130307 to 51165517 35210 - protein coding gene predicted gene, 32742
D9Mit258 9 51155061 to 51155176 115 DNA segment DNA segment, Chr 9, Massachusetts Institute of Technology 258
Tssr89541 9 51160542 to 51160563 21 - TSS region transcription start site region 89541
Tssr89542 9 51165397 to 51165415 18 - TSS region transcription start site region 89542
Tssr89543 9 51165426 to 51165449 23 - TSS region transcription start site region 89543
Tssr89544 9 51165654 to 51165664 10 - TSS region transcription start site region 89544
Tssr85080 9 51186117 to 51186163 46 + TSS region transcription start site region 85080
Tssr85081 9 51204852 to 51204857 5 + TSS region transcription start site region 85081
Tssr85082 9 51213537 to 51213562 25 + TSS region transcription start site region 85082
Tssr85083 9 51213683 to 51213697 14 + TSS region transcription start site region 85083
Pou2af1 9 51213708 to 51240080 26372 + protein coding gene POU domain, class 2, associating factor 1
Tssr85084 9 51213719 to 51213725 6 + TSS region transcription start site region 85084
Tssr85085 9 51214477 to 51214507 30 + TSS region transcription start site region 85085
Gm47828 9 51215733 to 51219521 3788 + sense intronic lncRNA gene predicted gene, 47828
Tssr89545 9 51216019 to 51216026 7 - TSS region transcription start site region 89545
Colca2 9 51270258 to 51278569 8311 - protein coding gene COLCA2 homolog
Tssr85086 9 51272886 to 51272891 5 + TSS region transcription start site region 85086
Tssr85087 9 51273800 to 51273816 16 + TSS region transcription start site region 85087
Tssr85088 9 51273823 to 51273836 13 + TSS region transcription start site region 85088
2010007H06Rik 9 51273942 to 51277602 3660 + antisense lncRNA gene RIKEN cDNA 2010007H06 gene
Tssr89546 9 51274896 to 51274911 15 - TSS region transcription start site region 89546
Cpgi21741 9 51278451 to 51279445 994 CpG island CpG island 21741
Tssr89547 9 51278540 to 51278576 36 - TSS region transcription start site region 89547
Gm32819 9 51278990 to 51300421 21431 + lncRNA gene predicted gene, 32819
1810046K07Rik 9 51289686 to 51328917 39231 - protein coding gene RIKEN cDNA 1810046K07 gene
Cpgi21742 9 51291474 to 51291755 281 CpG island CpG island 21742
Gm39338 9 51313036 to 51370839 57803 + lncRNA gene predicted gene, 39338
Tssr85089 9 51315893 to 51315899 6 + TSS region transcription start site region 85089
Tssr89548 9 51318360 to 51318379 19 - TSS region transcription start site region 89548
Tssr89549 9 51328898 to 51328923 25 - TSS region transcription start site region 89549
Tssr2871 9 51433296 to 51433301 5 + TSS region transcription start site region 2871
D9Mit230 9 51551297 to 51551421 124 DNA segment DNA segment, Chr 9, Massachusetts Institute of Technology 230
Gm47854 9 51621425 to 51655127 33702 - lincRNA gene predicted gene, 47854
Gm7293 9 51622745 to 51623751 1006 + pseudogene predicted gene 7293
Tssr85090 9 51656862 to 51656863 1 + TSS region transcription start site region 85090
Gm8959 9 51656891 to 51657461 570 + pseudogene predicted gene 8959
Gm40520 9 51752624 to 51765186 12562 - lncRNA gene predicted gene, 40520
Cpgi21743 9 51764686 to 51766238 1552 CpG island CpG island 21743
Tssr85091 9 51765304 to 51765317 13 + TSS region transcription start site region 85091
Tssr85092 9 51765325 to 51765364 39 + TSS region transcription start site region 85092
Arhgap20 9 51765352 to 51853059 87707 + protein coding gene Rho GTPase activating protein 20
Tssr85093 9 51765418 to 51765425 7 + TSS region transcription start site region 85093
Cpgi21744 9 51766629 to 51766784 155 CpG island CpG island 21744
Arhgap20os 9 51839493 to 51875885 36392 - antisense lncRNA gene Rho GTPase activating protein 20, opposite strand
Tssr85094 9 51853529 to 51853540 11 + TSS region transcription start site region 85094
Tssr89550 9 51875879 to 51875887 8 - TSS region transcription start site region 89550
D9Mit1006 9 51897240 to 51897370 130 DNA segment DNA segment, Chr 9, Massachusetts Institute of Technology 1006
Tssr85095 9 51914421 to 51914434 13 + TSS region transcription start site region 85095
4933407I05Rik 9 51914429 to 51927003 12574 + lincRNA gene RIKEN cDNA 4933407I05 gene
Tssr85096 9 51914439 to 51914467 28 + TSS region transcription start site region 85096
Gm6980 9 51915912 to 51924610 8698 - lincRNA gene predicted gene 6980
Fdx1 9 51943306 to 51963556 20250 - protein coding gene ferredoxin 1
Tssr89551 9 51943371 to 51943375 4 - TSS region transcription start site region 89551
Tssr89552 9 51945843 to 51945846 3 - TSS region transcription start site region 89552
Tssr89553 9 51956933 to 51956936 3 - TSS region transcription start site region 89553
Cpgi21745 9 51962889 to 51963801 912 CpG island CpG island 21745
Tssr85097 9 51962905 to 51962917 12 + TSS region transcription start site region 85097
Tssr89554 9 51963404 to 51963425 21 - TSS region transcription start site region 89554
Tssr89555 9 51963470 to 51963525 55 - TSS region transcription start site region 89555
Tssr89556 9 51963548 to 51963563 15 - TSS region transcription start site region 89556
Tssr89557 9 51963609 to 51963616 7 - TSS region transcription start site region 89557
Tssr89558 9 51974807 to 51974812 5 - TSS region transcription start site region 89558