Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 9:50782725-53314204

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214 genes found. Result truncated to 200 rows.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Tdmq1 9 40508298 to 51897370 11389072 QTL type 2 diabetes modifying QTL 1
Tglq7 9 50200000 to 51600000 1400000 QTL triglyceride QTL 7
Alg9 9 50775019 to 50843542 68523 + protein coding gene asparagine-linked glycosylation 9 (alpha 1,2 mannosyltransferase)
Tssr85074 9 50803509 to 50803521 12 + TSS region transcription start site region 85074
Tssr89520 9 50809206 to 50809211 5 - TSS region transcription start site region 89520
Tssr85075 9 50835302 to 50835329 27 + TSS region transcription start site region 85075
C130081A10Rik 9 50848285 to 50849738 1453 unclassified gene RIKEN cDNA C130081A10 gene
Cpgi21736 9 50856394 to 50857534 1140 CpG island CpG island 21736
Ppp2r1b 9 50856617 to 50899313 42696 + protein coding gene protein phosphatase 2, regulatory subunit A, beta
Tssr85076 9 50856938 to 50856987 49 + TSS region transcription start site region 85076
Tssr85077 9 50885488 to 50885498 10 + TSS region transcription start site region 85077
Gm25558 9 50887950 to 50888055 105 + snRNA gene predicted gene, 25558
Sik2 9 50892801 to 51009073 116272 - protein coding gene salt inducible kinase 2
D9Mit193 9 50897870 to 50897992 122 DNA segment DNA segment, Chr 9, Massachusetts Institute of Technology 193
Tssr2870 9 50905552 to 50905577 25 + TSS region transcription start site region 2870
Tssr89521 9 50972739 to 50972743 4 - TSS region transcription start site region 89521
Cpgi21737 9 51008047 to 51009521 1474 CpG island CpG island 21737
Tssr89522 9 51008966 to 51009080 114 - TSS region transcription start site region 89522
Gm32681 9 51046418 to 51069231 22813 + lncRNA gene predicted gene, 32681
Layn 9 51055023 to 51077209 22186 - protein coding gene layilin
Tssr89523 9 51056443 to 51056460 17 - TSS region transcription start site region 89523
Tssr89524 9 51056701 to 51056703 2 - TSS region transcription start site region 89524
Tssr89525 9 51056975 to 51056996 21 - TSS region transcription start site region 89525
Tssr89526 9 51057011 to 51057029 18 - TSS region transcription start site region 89526
Tssr89527 9 51057074 to 51057085 11 - TSS region transcription start site region 89527
Tssr85078 9 51062174 to 51062191 17 + TSS region transcription start site region 85078
Tssr89528 9 51068102 to 51068120 18 - TSS region transcription start site region 89528
Cpgi21738 9 51076806 to 51077105 299 CpG island CpG island 21738
Tssr89529 9 51077030 to 51077062 32 - TSS region transcription start site region 89529
Tssr89530 9 51077064 to 51077100 36 - TSS region transcription start site region 89530
Tssr89531 9 51077110 to 51077121 11 - TSS region transcription start site region 89531
4833427G06Rik 9 51081313 to 51102078 20765 - protein coding gene RIKEN cDNA 4833427G06 gene
Cpgi21739 9 51101752 to 51102132 380 CpG island CpG island 21739
Tssr89532 9 51101780 to 51101790 10 - TSS region transcription start site region 89532
Tssr89533 9 51101896 to 51101934 38 - TSS region transcription start site region 89533
Tssr89534 9 51102035 to 51102044 9 - TSS region transcription start site region 89534
Tssr89535 9 51102047 to 51102056 9 - TSS region transcription start site region 89535
Tssr89536 9 51102062 to 51102085 23 - TSS region transcription start site region 89536
Tssr89537 9 51102126 to 51102131 5 - TSS region transcription start site region 89537
Btg4 9 51102265 to 51119700 17435 + protein coding gene B cell translocation gene 4
Mirc21 9 51103034 to 51103645 611 complex/cluster/region microRNA cluster 21, including Mir34c through Mir34b
Mir34c 9 51103034 to 51103110 76 - miRNA gene microRNA 34c
Cpgi21740 9 51103344 to 51103981 637 CpG island CpG island 21740
Mir34b 9 51103562 to 51103645 83 - miRNA gene microRNA 34b
Tssr89538 9 51103981 to 51103994 13 - TSS region transcription start site region 89538
Tssr89539 9 51105832 to 51105851 19 - TSS region transcription start site region 89539
Tssr89540 9 51105874 to 51105888 14 - TSS region transcription start site region 89540
Tssr85079 9 51115999 to 51116006 7 + TSS region transcription start site region 85079
Gm32742 9 51130307 to 51165517 35210 - protein coding gene predicted gene, 32742
D9Mit258 9 51155061 to 51155176 115 DNA segment DNA segment, Chr 9, Massachusetts Institute of Technology 258
Tssr89541 9 51160542 to 51160563 21 - TSS region transcription start site region 89541
Tssr89542 9 51165397 to 51165415 18 - TSS region transcription start site region 89542
Tssr89543 9 51165426 to 51165449 23 - TSS region transcription start site region 89543
Tssr89544 9 51165654 to 51165664 10 - TSS region transcription start site region 89544
Tssr85080 9 51186117 to 51186163 46 + TSS region transcription start site region 85080
Tssr85081 9 51204852 to 51204857 5 + TSS region transcription start site region 85081
Tssr85082 9 51213537 to 51213562 25 + TSS region transcription start site region 85082
Tssr85083 9 51213683 to 51213697 14 + TSS region transcription start site region 85083
Pou2af1 9 51213708 to 51240080 26372 + protein coding gene POU domain, class 2, associating factor 1
Tssr85084 9 51213719 to 51213725 6 + TSS region transcription start site region 85084
Tssr85085 9 51214477 to 51214507 30 + TSS region transcription start site region 85085
Gm47828 9 51215733 to 51219521 3788 + sense intronic lncRNA gene predicted gene, 47828
Tssr89545 9 51216019 to 51216026 7 - TSS region transcription start site region 89545
Colca2 9 51270258 to 51278569 8311 - protein coding gene COLCA2 homolog
Tssr85086 9 51272886 to 51272891 5 + TSS region transcription start site region 85086
Tssr85087 9 51273800 to 51273816 16 + TSS region transcription start site region 85087
Tssr85088 9 51273823 to 51273836 13 + TSS region transcription start site region 85088
2010007H06Rik 9 51273942 to 51277602 3660 + antisense lncRNA gene RIKEN cDNA 2010007H06 gene
Tssr89546 9 51274896 to 51274911 15 - TSS region transcription start site region 89546
Cpgi21741 9 51278451 to 51279445 994 CpG island CpG island 21741
Tssr89547 9 51278540 to 51278576 36 - TSS region transcription start site region 89547
Gm32819 9 51278990 to 51300421 21431 + lncRNA gene predicted gene, 32819
1810046K07Rik 9 51289686 to 51328917 39231 - protein coding gene RIKEN cDNA 1810046K07 gene
Cpgi21742 9 51291474 to 51291755 281 CpG island CpG island 21742
Gm39338 9 51313036 to 51370839 57803 + lncRNA gene predicted gene, 39338
Tssr85089 9 51315893 to 51315899 6 + TSS region transcription start site region 85089
Tssr89548 9 51318360 to 51318379 19 - TSS region transcription start site region 89548
Tssr89549 9 51328898 to 51328923 25 - TSS region transcription start site region 89549
Tssr2871 9 51433296 to 51433301 5 + TSS region transcription start site region 2871
D9Mit230 9 51551297 to 51551421 124 DNA segment DNA segment, Chr 9, Massachusetts Institute of Technology 230
Gm47854 9 51621425 to 51655127 33702 - lincRNA gene predicted gene, 47854
Gm7293 9 51622745 to 51623751 1006 + pseudogene predicted gene 7293
Tssr85090 9 51656862 to 51656863 1 + TSS region transcription start site region 85090
Gm8959 9 51656891 to 51657461 570 + pseudogene predicted gene 8959
Gm40520 9 51752624 to 51765186 12562 - lncRNA gene predicted gene, 40520
Cpgi21743 9 51764686 to 51766238 1552 CpG island CpG island 21743
Tssr85091 9 51765304 to 51765317 13 + TSS region transcription start site region 85091
Tssr85092 9 51765325 to 51765364 39 + TSS region transcription start site region 85092
Arhgap20 9 51765352 to 51853059 87707 + protein coding gene Rho GTPase activating protein 20
Tssr85093 9 51765418 to 51765425 7 + TSS region transcription start site region 85093
Cpgi21744 9 51766629 to 51766784 155 CpG island CpG island 21744
Arhgap20os 9 51839493 to 51875885 36392 - antisense lncRNA gene Rho GTPase activating protein 20, opposite strand
Tssr85094 9 51853529 to 51853540 11 + TSS region transcription start site region 85094
Tssr89550 9 51875879 to 51875887 8 - TSS region transcription start site region 89550
D9Mit1006 9 51897240 to 51897370 130 DNA segment DNA segment, Chr 9, Massachusetts Institute of Technology 1006
Tssr85095 9 51914421 to 51914434 13 + TSS region transcription start site region 85095
4933407I05Rik 9 51914429 to 51927003 12574 + lincRNA gene RIKEN cDNA 4933407I05 gene
Tssr85096 9 51914439 to 51914467 28 + TSS region transcription start site region 85096
Gm6980 9 51915912 to 51924610 8698 - lincRNA gene predicted gene 6980
Fdx1 9 51943306 to 51963556 20250 - protein coding gene ferredoxin 1
Tssr89551 9 51943371 to 51943375 4 - TSS region transcription start site region 89551
Tssr89552 9 51945843 to 51945846 3 - TSS region transcription start site region 89552
Tssr89553 9 51956933 to 51956936 3 - TSS region transcription start site region 89553
Cpgi21745 9 51962889 to 51963801 912 CpG island CpG island 21745
Tssr85097 9 51962905 to 51962917 12 + TSS region transcription start site region 85097
Tssr89554 9 51963404 to 51963425 21 - TSS region transcription start site region 89554
Tssr89555 9 51963470 to 51963525 55 - TSS region transcription start site region 89555
Tssr89556 9 51963548 to 51963563 15 - TSS region transcription start site region 89556
Tssr89557 9 51963609 to 51963616 7 - TSS region transcription start site region 89557
Tssr89558 9 51974807 to 51974812 5 - TSS region transcription start site region 89558
Gm6981 9 52002274 to 52003281 1007 - pseudogene predicted pseudogene 6981
Tssr85098 9 52047152 to 52047163 11 + TSS region transcription start site region 85098
Rdx 9 52047173 to 52088735 41562 + protein coding gene radixin
Cpgi21746 9 52047725 to 52049204 1479 CpG island CpG island 21746
Tssr85099 9 52047931 to 52047961 30 + TSS region transcription start site region 85099
Tssr85100 9 52047967 to 52047990 23 + TSS region transcription start site region 85100
Tssr85101 9 52048001 to 52048030 29 + TSS region transcription start site region 85101
Tssr2872 9 52048156 to 52048202 46 + TSS region transcription start site region 2872
Tssr85102 9 52048234 to 52048245 11 + TSS region transcription start site region 85102
Tssr85103 9 52048246 to 52048319 73 + TSS region transcription start site region 85103
Tssr89559 9 52048671 to 52048678 7 - TSS region transcription start site region 89559
Tssr89560 9 52048685 to 52048696 11 - TSS region transcription start site region 89560
Tssr89561 9 52048699 to 52048712 13 - TSS region transcription start site region 89561
Tssr89562 9 52048714 to 52048732 18 - TSS region transcription start site region 89562
Tssr89563 9 52048748 to 52048759 11 - TSS region transcription start site region 89563
Tssr89564 9 52048764 to 52048779 15 - TSS region transcription start site region 89564
Tssr89565 9 52048793 to 52048800 7 - TSS region transcription start site region 89565
Tssr89566 9 52048841 to 52048850 9 - TSS region transcription start site region 89566
Tssr85104 9 52048902 to 52048912 10 + TSS region transcription start site region 85104
Tssr85105 9 52049435 to 52049442 7 + TSS region transcription start site region 85105
Tssr85106 9 52060830 to 52060835 5 + TSS region transcription start site region 85106
Tssr85107 9 52067393 to 52067408 15 + TSS region transcription start site region 85107
Tssr85108 9 52068210 to 52068249 39 + TSS region transcription start site region 85108
Tssr85109 9 52069696 to 52069709 13 + TSS region transcription start site region 85109
Tssr85110 9 52069745 to 52069755 10 + TSS region transcription start site region 85110
Gm33614 9 52077590 to 52080334 2744 - pseudogene predicted gene, 33614
Tssr85111 9 52088236 to 52088275 39 + TSS region transcription start site region 85111
Gm27686 9 52103689 to 52103779 90 - miRNA gene predicted gene, 27686
Tssr85112 9 52104236 to 52104260 24 + TSS region transcription start site region 85112
Tssr89567 9 52110965 to 52110969 4 - TSS region transcription start site region 89567
Zc3h12c 9 52111344 to 52168572 57228 - protein coding gene zinc finger CCCH type containing 12C
Tssr89568 9 52112982 to 52113019 37 - TSS region transcription start site region 89568
Tssr85113 9 52115143 to 52115144 1 + TSS region transcription start site region 85113
Mir6244 9 52115623 to 52115739 116 + miRNA gene microRNA 6244
Cocrb8 9 52123178 to 52123299 121 QTL cocaine related behavior 8
D9Mit4 9 52123178 to 52123299 121 DNA segment DNA segment, Chr 9, Massachusetts Institute of Technology 4
Etohc3 9 52123178 to 52123299 121 QTL ethanol consumption 3
Renf1 9 52123178 to 99910428 47787250 QTL renal failure 1
Tbdr1 9 52123178 to 52123299 121 QTL body temperature response to dietary restriction, QTL 1
Tssr89569 9 52125471 to 52125483 12 - TSS region transcription start site region 89569
Tssr89570 9 52127864 to 52127877 13 - TSS region transcription start site region 89570
Tssr89571 9 52141629 to 52141647 18 - TSS region transcription start site region 89571
Tssr89572 9 52141730 to 52141747 17 - TSS region transcription start site region 89572
Tssr89573 9 52141752 to 52141764 12 - TSS region transcription start site region 89573
Tssr89574 9 52143920 to 52143932 12 - TSS region transcription start site region 89574
Tssr89575 9 52149351 to 52149372 21 - TSS region transcription start site region 89575
Tssr89576 9 52164516 to 52164524 8 - TSS region transcription start site region 89576
Tssr89577 9 52164565 to 52164576 11 - TSS region transcription start site region 89577
Tssr2873 9 52164612 to 52164624 12 - TSS region transcription start site region 2873
Tssr89578 9 52164738 to 52164769 31 - TSS region transcription start site region 89578
Tssr89579 9 52167379 to 52167382 3 - TSS region transcription start site region 89579
Cpgi21747 9 52167834 to 52169183 1349 CpG island CpG island 21747
Tssr89580 9 52168675 to 52168680 5 - TSS region transcription start site region 89580
Tssr89581 9 52168740 to 52168768 28 - TSS region transcription start site region 89581
Tssr89582 9 52168792 to 52168806 14 - TSS region transcription start site region 89582
Tssr89583 9 52168838 to 52168871 33 - TSS region transcription start site region 89583
Tssr89584 9 52168888 to 52168903 15 - TSS region transcription start site region 89584
Tssr89585 9 52172602 to 52172654 52 - TSS region transcription start site region 89585
Tssr89586 9 52172657 to 52172685 28 - TSS region transcription start site region 89586
Tssr85114 9 52172815 to 52172829 14 + TSS region transcription start site region 85114
D9Mit231 9 52285497 to 52285607 110 DNA segment DNA segment, Chr 9, Massachusetts Institute of Technology 231
Tssr89587 9 52288026 to 52288034 8 - TSS region transcription start site region 89587
Gm25562 9 52291199 to 52291331 132 + snoRNA gene predicted gene, 25562
Gm47957 9 52321896 to 52349311 27415 - lincRNA gene predicted gene, 47957
Gm47960 9 52399274 to 52401968 2694 - lincRNA gene predicted gene, 47960
Gm29692 9 52403258 to 52416443 13185 + protein coding gene predicted gene, 29692
Gm49389 9 52404299 to 52404815 516 + pseudogene predicted gene, 49389
Gm33125 9 52423576 to 52428381 4805 + lincRNA gene predicted gene, 33125
Hrtiq1 9 52514798 to 68648726 16133928 QTL heart rate time index, QTL 1
Gm33210 9 52529967 to 52574584 44617 - lncRNA gene predicted gene, 33210
Tssr85115 9 52584778 to 52584784 6 + TSS region transcription start site region 85115
AI593442 9 52673042 to 52679780 6738 - protein coding gene expressed sequence AI593442
Tssr89588 9 52676795 to 52676808 13 - TSS region transcription start site region 89588
Tssr89589 9 52677863 to 52677874 11 - TSS region transcription start site region 89589
Cpgi21748 9 52677914 to 52679053 1139 CpG island CpG island 21748
Cpgi21749 9 52679164 to 52679835 671 CpG island CpG island 21749
Tssr89590 9 52679396 to 52679426 30 - TSS region transcription start site region 89590
Tssr89591 9 52679677 to 52679686 9 - TSS region transcription start site region 89591
Tssr89592 9 52679697 to 52679717 20 - TSS region transcription start site region 89592
Tssr89593 9 52679730 to 52679787 57 - TSS region transcription start site region 89593
Tssr85116 9 52679848 to 52679859 11 + TSS region transcription start site region 85116
Gm1715 9 52679863 to 52798772 118909 + lincRNA gene predicted gene 1715
Tssr85117 9 52683080 to 52683082 2 + TSS region transcription start site region 85117
Gm22242 9 52756908 to 52757025 117 + snRNA gene predicted gene, 22242
Gm47981 9 52764011 to 52764239 228 + pseudogene predicted gene, 47981
Gm33256 9 52782770 to 52787336 4566 - lncRNA gene predicted gene, 33256
Gm39339 9 52859671 to 52876162 16491 - lncRNA gene predicted gene, 39339
4932432N04Rik 9 53070598 to 53074081 3483 unclassified gene RIKEN cDNA 4932432N04 gene
Ddx10 9 53098635 to 53248053 149418 - protein coding gene DEAD (Asp-Glu-Ala-Asp) box polypeptide 10
Tssr89594 9 53157328 to 53157340 12 - TSS region transcription start site region 89594