Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 9:50233780-51153793

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200 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Gm40519 9 50233531 to 50241316 7785 - lncRNA gene predicted gene, 40519
Tssr85021 9 50239730 to 50239731 1 + TSS region transcription start site region 85021
D9Mit288 9 50291649 to 50291745 96 DNA segment DNA segment, Chr 9, Massachusetts Institute of Technology 288
Gm39336 9 50300784 to 50301817 1033 - lincRNA gene predicted gene, 39336
Rpl10-ps3 9 50344226 to 50344984 758 - pseudogene ribosomal protein L10, pseudogene 3
Tssr89471 9 50344982 to 50344984 2 - TSS region transcription start site region 89471
Gm38579 9 50390839 to 50392388 1549 - lncRNA gene predicted gene, 38579
D9Mit172 9 50401590 to 50401731 141 DNA segment DNA segment, Chr 9, Massachusetts Institute of Technology 172
Tssr89472 9 50430282 to 50430294 12 - TSS region transcription start site region 89472
Tssr89473 9 50430354 to 50430371 17 - TSS region transcription start site region 89473
Tssr89474 9 50447899 to 50447921 22 - TSS region transcription start site region 89474
Gm32462 9 50472164 to 50486100 13936 - lncRNA gene predicted gene, 32462
Tssr89475 9 50475709 to 50475727 18 - TSS region transcription start site region 89475
Tssr85022 9 50479125 to 50479127 2 + TSS region transcription start site region 85022
Tssr89476 9 50479529 to 50479538 9 - TSS region transcription start site region 89476
Tssr89477 9 50479582 to 50479592 10 - TSS region transcription start site region 89477
Gm9557 9 50484368 to 50485849 1481 + pseudogene predicted gene 9557
Plet1os 9 50488799 to 50504805 16006 - antisense lncRNA gene placenta expressed transcript 1, opposite strand
Tssr2866 9 50494048 to 50494057 9 + TSS region transcription start site region 2866
Tssr85023 9 50494139 to 50494146 7 + TSS region transcription start site region 85023
Tssr85024 9 50494233 to 50494272 39 + TSS region transcription start site region 85024
Tssr85025 9 50494516 to 50494533 17 + TSS region transcription start site region 85025
Plet1 9 50494525 to 50505482 10957 + protein coding gene placenta expressed transcript 1
Tssr85026 9 50496776 to 50496801 25 + TSS region transcription start site region 85026
Cpgi21724 9 50498898 to 50499144 246 CpG island CpG island 21724
Tssr85027 9 50499144 to 50499164 20 + TSS region transcription start site region 85027
Tssr85028 9 50499174 to 50499186 12 + TSS region transcription start site region 85028
Tssr85029 9 50499209 to 50499222 13 + TSS region transcription start site region 85029
Tssr85030 9 50499254 to 50499266 12 + TSS region transcription start site region 85030
Tssr85031 9 50501065 to 50501091 26 + TSS region transcription start site region 85031
Tssr85032 9 50504286 to 50504297 11 + TSS region transcription start site region 85032
Tssr85033 9 50504305 to 50504346 41 + TSS region transcription start site region 85033
Tssr85034 9 50504349 to 50504367 18 + TSS region transcription start site region 85034
Tssr85035 9 50504552 to 50504566 14 + TSS region transcription start site region 85035
Tssr89478 9 50504779 to 50504821 42 - TSS region transcription start site region 89478
Tssr85036 9 50506395 to 50506398 3 + TSS region transcription start site region 85036
Tssr89479 9 50507754 to 50507765 11 - TSS region transcription start site region 89479
Pts 9 50521617 to 50528641 7024 - protein coding gene 6-pyruvoyl-tetrahydropterin synthase
Cpgi21725 9 50528213 to 50528876 663 CpG island CpG island 21725
Tssr89480 9 50528642 to 50528698 56 - TSS region transcription start site region 89480
Tssr85037 9 50528743 to 50528773 30 + TSS region transcription start site region 85037
Gm47077 9 50528767 to 50533752 4985 + antisense lncRNA gene predicted gene, 47077
Bco2 9 50533087 to 50555181 22094 - protein coding gene beta-carotene oxygenase 2
D9Mit70 9 50550846 to 50551009 163 DNA segment DNA segment, Chr 9, Massachusetts Institute of Technology 70
D9Mit70.1 9 50550899 to 50551028 129 DNA segment DNA segment, Chr 9, Massachusetts Institute of Technology 70.1
Il18 9 50554827 to 50581840 27013 + protein coding gene interleukin 18
Tssr85038 9 50554833 to 50554848 15 + TSS region transcription start site region 85038
Tssr85039 9 50554863 to 50554948 85 + TSS region transcription start site region 85039
Tssr89481 9 50555127 to 50555151 24 - TSS region transcription start site region 89481
Tssr89482 9 50555170 to 50555183 13 - TSS region transcription start site region 89482
Tex12 9 50557148 to 50561268 4120 - protein coding gene testis expressed 12
Cpgi21726 9 50560966 to 50561686 720 CpG island CpG island 21726
Tssr89483 9 50561261 to 50561268 7 - TSS region transcription start site region 89483
Tssr89484 9 50561282 to 50561301 19 - TSS region transcription start site region 89484
Tssr89485 9 50561305 to 50561316 11 - TSS region transcription start site region 89485
Tssr89486 9 50561320 to 50561331 11 - TSS region transcription start site region 89486
Tssr85040 9 50565337 to 50565376 39 + TSS region transcription start site region 85040
Tssr85041 9 50565382 to 50565427 45 + TSS region transcription start site region 85041
Tssr2867 9 50593005 to 50593037 32 - TSS region transcription start site region 2867
Tssr89487 9 50593073 to 50593079 6 - TSS region transcription start site region 89487
Tssr85042 9 50593225 to 50593265 40 + TSS region transcription start site region 85042
Sdhd 9 50596357 to 50603812 7455 - protein coding gene succinate dehydrogenase complex, subunit D, integral membrane protein
Cpgi21727 9 50603287 to 50604437 1150 CpG island CpG island 21727
Tssr89488 9 50603792 to 50603824 32 - TSS region transcription start site region 89488
Tssr85043 9 50603892 to 50603903 11 + TSS region transcription start site region 85043
Tssr85044 9 50603907 to 50603952 45 + TSS region transcription start site region 85044
Timm8b 9 50603910 to 50605320 1410 + protein coding gene translocase of inner mitochondrial membrane 8B
Nkapd1 9 50605240 to 50617464 12224 - protein coding gene NKAP domain containing 1
Cpgi21728 9 50616565 to 50617612 1047 CpG island CpG island 21728
Tssr89489 9 50616880 to 50616932 52 - TSS region transcription start site region 89489
Tssr2868 9 50617004 to 50617020 16 - TSS region transcription start site region 2868
Tssr89490 9 50617228 to 50617289 61 - TSS region transcription start site region 89490
Tssr85045 9 50617308 to 50617361 53 + TSS region transcription start site region 85045
Pih1d2 9 50617321 to 50625000 7679 + protein coding gene PIH1 domain containing 2
Tssr89491 9 50617428 to 50617467 39 - TSS region transcription start site region 89491
Tssr85046 9 50617516 to 50617561 45 + TSS region transcription start site region 85046
Dlat 9 50634633 to 50659780 25147 - protein coding gene dihydrolipoamide S-acetyltransferase (E2 component of pyruvate dehydrogenase complex)
Cpgi21729 9 50658980 to 50660083 1103 CpG island CpG island 21729
Tssr89492 9 50659464 to 50659477 13 - TSS region transcription start site region 89492
Tssr89493 9 50659481 to 50659488 7 - TSS region transcription start site region 89493
Tssr89494 9 50659493 to 50659564 71 - TSS region transcription start site region 89494
Tssr89495 9 50659570 to 50659573 3 - TSS region transcription start site region 89495
Tssr89496 9 50659790 to 50659801 11 - TSS region transcription start site region 89496
Tssr2869 9 50659932 to 50659973 41 - TSS region transcription start site region 2869
3110005L24Rik 9 50660015 to 50661527 1512 + lncRNA gene RIKEN cDNA 3110005L24 gene
Dixdc1 9 50662752 to 50739517 76765 - protein coding gene DIX domain containing 1
D9Mit27 9 50679791 to 50679965 174 DNA segment DNA segment, Chr 9, Massachusetts Institute of Technology 27
D9Mit97 9 50679791 to 50679941 150 DNA segment DNA segment, Chr 9, Massachusetts Institute of Technology 97
Tssr89497 9 50693780 to 50693793 13 - TSS region transcription start site region 89497
Tssr89498 9 50693800 to 50693814 14 - TSS region transcription start site region 89498
Gm39337 9 50697230 to 50717013 19783 + lncRNA gene predicted gene, 39337
Cpgi21730 9 50698431 to 50699438 1007 CpG island CpG island 21730
Tssr89499 9 50699000 to 50699028 28 - TSS region transcription start site region 89499
Cpgi21731 9 50727339 to 50728555 1216 CpG island CpG island 21731
Tssr89500 9 50727921 to 50728008 87 - TSS region transcription start site region 89500
Tssr89501 9 50728117 to 50728129 12 - TSS region transcription start site region 89501
Tssr89502 9 50728230 to 50728251 21 - TSS region transcription start site region 89502
Tssr89503 9 50728256 to 50728266 10 - TSS region transcription start site region 89503
Cpgi21732 9 50739136 to 50739552 416 CpG island CpG island 21732
Tssr89504 9 50739365 to 50739379 14 - TSS region transcription start site region 89504
Tssr85047 9 50739685 to 50739688 3 + TSS region transcription start site region 85047
2310030G06Rik 9 50739691 to 50746521 6830 - protein coding gene RIKEN cDNA 2310030G06 gene
Tssr89505 9 50746475 to 50746494 19 - TSS region transcription start site region 89505
Tssr89506 9 50746501 to 50746597 96 - TSS region transcription start site region 89506
Hspb2 9 50751078 to 50752354 1276 - protein coding gene heat shock protein 2
Cryab 9 50751325 to 50756636 5311 + protein coding gene crystallin, alpha B
Tssr85048 9 50751339 to 50751367 28 + TSS region transcription start site region 85048
Cpgi21733 9 50751353 to 50751673 320 CpG island CpG island 21733
Tssr85049 9 50751841 to 50751852 11 + TSS region transcription start site region 85049
Tssr85050 9 50751873 to 50751902 29 + TSS region transcription start site region 85050
Tssr89507 9 50752051 to 50752063 12 - TSS region transcription start site region 89507
Tssr89508 9 50752290 to 50752337 47 - TSS region transcription start site region 89508
Tssr89509 9 50752348 to 50752373 25 - TSS region transcription start site region 89509
Tssr89510 9 50752547 to 50752558 11 - TSS region transcription start site region 89510
Tssr85051 9 50752886 to 50752894 8 + TSS region transcription start site region 85051
Tssr85052 9 50752901 to 50753086 185 + TSS region transcription start site region 85052
Tssr85053 9 50753093 to 50753098 5 + TSS region transcription start site region 85053
Tssr85054 9 50753099 to 50753105 6 + TSS region transcription start site region 85054
Tssr85055 9 50753120 to 50753129 9 + TSS region transcription start site region 85055
Tssr85056 9 50753151 to 50753155 4 + TSS region transcription start site region 85056
Tssr85057 9 50753164 to 50753167 3 + TSS region transcription start site region 85057
Tssr85058 9 50753177 to 50753198 21 + TSS region transcription start site region 85058
Tssr85059 9 50753208 to 50753250 42 + TSS region transcription start site region 85059
Tssr85060 9 50753257 to 50753263 6 + TSS region transcription start site region 85060
Tssr85061 9 50753279 to 50753282 3 + TSS region transcription start site region 85061
Tssr85062 9 50753311 to 50753325 14 + TSS region transcription start site region 85062
Tssr85063 9 50753350 to 50753353 3 + TSS region transcription start site region 85063
repro46 9 50753738 to 56901655 6147917 heritable phenotypic marker reproductive mutant 46, JAX Reproductive Mutagenesis Program
D9Mit96 9 50753738 to 50753928 190 DNA segment DNA segment, Chr 9, Massachusetts Institute of Technology 96
Tssr85064 9 50754210 to 50754222 12 + TSS region transcription start site region 85064
Tssr85065 9 50754224 to 50754240 16 + TSS region transcription start site region 85065
Tssr85066 9 50754281 to 50754288 7 + TSS region transcription start site region 85066
Tssr85067 9 50754311 to 50754328 17 + TSS region transcription start site region 85067
Tssr85068 9 50756426 to 50756442 16 + TSS region transcription start site region 85068
Tssr89511 9 50756452 to 50756502 50 - TSS region transcription start site region 89511
Tssr89512 9 50756628 to 50756632 4 - TSS region transcription start site region 89512
1110032A03Rik 9 50762828 to 50771402 8574 - protein coding gene RIKEN cDNA 1110032A03 gene
Tssr89513 9 50765880 to 50765887 7 - TSS region transcription start site region 89513
Tssr89514 9 50765904 to 50765923 19 - TSS region transcription start site region 89514
Tssr89515 9 50765927 to 50765935 8 - TSS region transcription start site region 89515
Tssr89516 9 50765938 to 50765943 5 - TSS region transcription start site region 89516
Cpgi21734 9 50767856 to 50768791 935 CpG island CpG island 21734
Tssr89517 9 50768109 to 50768186 77 - TSS region transcription start site region 89517
Tssr85069 9 50768228 to 50768271 43 + TSS region transcription start site region 85069
Fdxacb1 9 50768238 to 50772670 4432 + protein coding gene ferredoxin-fold anticodon binding domain containing 1
Gm38476 9 50771967 to 50774965 2998 - lncRNA gene predicted gene, 38476
Tssr85070 9 50774219 to 50774227 8 + TSS region transcription start site region 85070
Alg9 9 50775019 to 50843542 68523 + protein coding gene asparagine-linked glycosylation 9 (alpha 1,2 mannosyltransferase)
Cpgi21735 9 50775080 to 50776107 1027 CpG island CpG island 21735
Tssr89518 9 50775133 to 50775157 24 - TSS region transcription start site region 89518
Tssr89519 9 50775226 to 50775257 31 - TSS region transcription start site region 89519
Tssr85071 9 50775279 to 50775327 48 + TSS region transcription start site region 85071
Tssr85072 9 50775347 to 50775369 22 + TSS region transcription start site region 85072
Tssr85073 9 50775375 to 50775380 5 + TSS region transcription start site region 85073
Tssr85074 9 50803509 to 50803521 12 + TSS region transcription start site region 85074
Tssr89520 9 50809206 to 50809211 5 - TSS region transcription start site region 89520
Tssr85075 9 50835302 to 50835329 27 + TSS region transcription start site region 85075
C130081A10Rik 9 50848285 to 50849738 1453 unclassified gene RIKEN cDNA C130081A10 gene
Cpgi21736 9 50856394 to 50857534 1140 CpG island CpG island 21736
Ppp2r1b 9 50856617 to 50899313 42696 + protein coding gene protein phosphatase 2, regulatory subunit A, beta
Tssr85076 9 50856938 to 50856987 49 + TSS region transcription start site region 85076
Tssr85077 9 50885488 to 50885498 10 + TSS region transcription start site region 85077
Gm25558 9 50887950 to 50888055 105 + snRNA gene predicted gene, 25558
Sik2 9 50892801 to 51009073 116272 - protein coding gene salt inducible kinase 2
D9Mit193 9 50897870 to 50897992 122 DNA segment DNA segment, Chr 9, Massachusetts Institute of Technology 193
Tssr2870 9 50905552 to 50905577 25 + TSS region transcription start site region 2870
Tssr89521 9 50972739 to 50972743 4 - TSS region transcription start site region 89521
Cpgi21737 9 51008047 to 51009521 1474 CpG island CpG island 21737
Tssr89522 9 51008966 to 51009080 114 - TSS region transcription start site region 89522
Gm32681 9 51046418 to 51069231 22813 + lncRNA gene predicted gene, 32681
Layn 9 51055023 to 51077209 22186 - protein coding gene layilin
Tssr89523 9 51056443 to 51056460 17 - TSS region transcription start site region 89523
Tssr89524 9 51056701 to 51056703 2 - TSS region transcription start site region 89524
Tssr89525 9 51056975 to 51056996 21 - TSS region transcription start site region 89525
Tssr89526 9 51057011 to 51057029 18 - TSS region transcription start site region 89526
Tssr89527 9 51057074 to 51057085 11 - TSS region transcription start site region 89527
Tssr85078 9 51062174 to 51062191 17 + TSS region transcription start site region 85078
Tssr89528 9 51068102 to 51068120 18 - TSS region transcription start site region 89528
Cpgi21738 9 51076806 to 51077105 299 CpG island CpG island 21738
Tssr89529 9 51077030 to 51077062 32 - TSS region transcription start site region 89529
Tssr89530 9 51077064 to 51077100 36 - TSS region transcription start site region 89530
Tssr89531 9 51077110 to 51077121 11 - TSS region transcription start site region 89531
4833427G06Rik 9 51081313 to 51102078 20765 - protein coding gene RIKEN cDNA 4833427G06 gene
Cpgi21739 9 51101752 to 51102132 380 CpG island CpG island 21739
Tssr89532 9 51101780 to 51101790 10 - TSS region transcription start site region 89532
Tssr89533 9 51101896 to 51101934 38 - TSS region transcription start site region 89533
Tssr89534 9 51102035 to 51102044 9 - TSS region transcription start site region 89534
Tssr89535 9 51102047 to 51102056 9 - TSS region transcription start site region 89535
Tssr89536 9 51102062 to 51102085 23 - TSS region transcription start site region 89536
Tssr89537 9 51102126 to 51102131 5 - TSS region transcription start site region 89537
Btg4 9 51102265 to 51119700 17435 + protein coding gene B cell translocation gene 4
Mirc21 9 51103034 to 51103645 611 complex/cluster/region microRNA cluster 21, including Mir34c through Mir34b
Mir34c 9 51103034 to 51103110 76 - miRNA gene microRNA 34c
Cpgi21740 9 51103344 to 51103981 637 CpG island CpG island 21740
Mir34b 9 51103562 to 51103645 83 - miRNA gene microRNA 34b
Tssr89538 9 51103981 to 51103994 13 - TSS region transcription start site region 89538
Tssr89539 9 51105832 to 51105851 19 - TSS region transcription start site region 89539
Tssr89540 9 51105874 to 51105888 14 - TSS region transcription start site region 89540
Tssr85079 9 51115999 to 51116006 7 + TSS region transcription start site region 85079
Gm32742 9 51130307 to 51165517 35210 - protein coding gene predicted gene, 32742