Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 9:49866043-50507045

Filter by:
56 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Lmr2 9 37032110 to 50199840 13167730 QTL leishmaniasis resistance 2
D9Mit131.1 9 49912510 to 49912656 146 DNA segment DNA segment, Chr 9, Massachusetts Institute of Technology 131.1
D9Mit131 9 49912652 to 49912799 147 DNA segment DNA segment, Chr 9, Massachusetts Institute of Technology 131
D9Mit131.2 9 49912746 to 49912855 109 DNA segment DNA segment, Chr 9, Massachusetts Institute of Technology 131.2
Tssr85018 9 49954868 to 49954891 23 + TSS region transcription start site region 85018
Gm47543 9 49954878 to 49956554 1676 + lincRNA gene predicted gene, 47543
Tssr85019 9 49954893 to 49954900 7 + TSS region transcription start site region 85019
Tssr85020 9 49954902 to 49954911 9 + TSS region transcription start site region 85020
D9Mit162.1 9 49978195 to 49978395 200 DNA segment DNA segment, Chr 9, Massachusetts Institute of Technology 162.1
D9Mit162 9 49978402 to 49978536 134 DNA segment DNA segment, Chr 9, Massachusetts Institute of Technology 162
Ptnu3 9 49978402 to 49978536 134 QTL proteinuria 3
Tssr89469 9 50124332 to 50124346 14 - TSS region transcription start site region 89469
Gm8907 9 50186043 to 50187045 1002 - pseudogene predicted gene 8907
repro36 9 50199725 to 60494414 10294689 heritable phenotypic marker reproductive mutant 36, JAX Reproductive Mutagenesis Program
D9Mit71 9 50199725 to 50199840 115 DNA segment DNA segment, Chr 9, Massachusetts Institute of Technology 71
Si5lq3 9 50199725 to 50199840 115 QTL serum IGFBP-5 level QTL 3
Tglq7 9 50200000 to 51600000 1400000 QTL triglyceride QTL 7
Gm4042 9 50215088 to 50215714 626 + pseudogene predicted gene 4042
2310003N18Rik 9 50232523 to 50233182 659 - lincRNA gene RIKEN cDNA 2310003N18 gene
Tssr89470 9 50233180 to 50233184 4 - TSS region transcription start site region 89470
Gm40519 9 50233531 to 50241316 7785 - lncRNA gene predicted gene, 40519
Tssr85021 9 50239730 to 50239731 1 + TSS region transcription start site region 85021
D9Mit288 9 50291649 to 50291745 96 DNA segment DNA segment, Chr 9, Massachusetts Institute of Technology 288
Gm39336 9 50300784 to 50301817 1033 - lincRNA gene predicted gene, 39336
Rpl10-ps3 9 50344226 to 50344984 758 - pseudogene ribosomal protein L10, pseudogene 3
Tssr89471 9 50344982 to 50344984 2 - TSS region transcription start site region 89471
Gm38579 9 50390839 to 50392388 1549 - lncRNA gene predicted gene, 38579
D9Mit172 9 50401590 to 50401731 141 DNA segment DNA segment, Chr 9, Massachusetts Institute of Technology 172
Tssr89472 9 50430282 to 50430294 12 - TSS region transcription start site region 89472
Tssr89473 9 50430354 to 50430371 17 - TSS region transcription start site region 89473
Tssr89474 9 50447899 to 50447921 22 - TSS region transcription start site region 89474
Gm32462 9 50472164 to 50486100 13936 - lncRNA gene predicted gene, 32462
Tssr89475 9 50475709 to 50475727 18 - TSS region transcription start site region 89475
Tssr85022 9 50479125 to 50479127 2 + TSS region transcription start site region 85022
Tssr89476 9 50479529 to 50479538 9 - TSS region transcription start site region 89476
Tssr89477 9 50479582 to 50479592 10 - TSS region transcription start site region 89477
Gm9557 9 50484368 to 50485849 1481 + pseudogene predicted gene 9557
Plet1os 9 50488799 to 50504805 16006 - antisense lncRNA gene placenta expressed transcript 1, opposite strand
Tssr2866 9 50494048 to 50494057 9 + TSS region transcription start site region 2866
Tssr85023 9 50494139 to 50494146 7 + TSS region transcription start site region 85023
Tssr85024 9 50494233 to 50494272 39 + TSS region transcription start site region 85024
Tssr85025 9 50494516 to 50494533 17 + TSS region transcription start site region 85025
Plet1 9 50494525 to 50505482 10957 + protein coding gene placenta expressed transcript 1
Tssr85026 9 50496776 to 50496801 25 + TSS region transcription start site region 85026
Cpgi21724 9 50498898 to 50499144 246 CpG island CpG island 21724
Tssr85027 9 50499144 to 50499164 20 + TSS region transcription start site region 85027
Tssr85028 9 50499174 to 50499186 12 + TSS region transcription start site region 85028
Tssr85029 9 50499209 to 50499222 13 + TSS region transcription start site region 85029
Tssr85030 9 50499254 to 50499266 12 + TSS region transcription start site region 85030
Tssr85031 9 50501065 to 50501091 26 + TSS region transcription start site region 85031
Tssr85032 9 50504286 to 50504297 11 + TSS region transcription start site region 85032
Tssr85033 9 50504305 to 50504346 41 + TSS region transcription start site region 85033
Tssr85034 9 50504349 to 50504367 18 + TSS region transcription start site region 85034
Tssr85035 9 50504552 to 50504566 14 + TSS region transcription start site region 85035
Tssr89478 9 50504779 to 50504821 42 - TSS region transcription start site region 89478
Tssr85036 9 50506395 to 50506398 3 + TSS region transcription start site region 85036